##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546259_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1547771 Sequences flagged as poor quality 0 Sequence length 50 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.91879160418434 33.0 31.0 34.0 30.0 34.0 2 32.27839648113319 33.0 31.0 34.0 30.0 34.0 3 32.1291159997183 33.0 31.0 34.0 30.0 34.0 4 35.90855236336642 37.0 35.0 37.0 35.0 37.0 5 35.90093624961315 37.0 35.0 37.0 35.0 37.0 6 35.96687236031687 37.0 35.0 37.0 35.0 37.0 7 36.2052435405496 37.0 35.0 37.0 35.0 37.0 8 36.101452346632676 37.0 35.0 37.0 35.0 37.0 9 37.90914030563953 39.0 38.0 39.0 35.0 39.0 10 37.56960299682576 39.0 37.0 39.0 35.0 39.0 11 37.33156778360623 39.0 37.0 39.0 34.0 39.0 12 36.471158847142114 38.0 35.0 39.0 33.0 39.0 13 36.15305364940938 39.0 35.0 39.0 33.0 39.0 14 37.25887292112334 40.0 35.0 41.0 33.0 41.0 15 37.519583969463184 40.0 35.0 41.0 33.0 41.0 16 37.66575804818672 40.0 35.0 41.0 34.0 41.0 17 37.59356842840446 39.0 35.0 41.0 34.0 41.0 18 37.40819539841488 39.0 35.0 41.0 34.0 41.0 19 37.09517040957609 37.0 35.0 41.0 34.0 41.0 20 36.75523510906975 36.0 35.0 41.0 33.0 41.0 21 36.628235701534656 36.0 35.0 40.0 33.0 41.0 22 36.54069691188167 36.0 35.0 40.0 33.0 41.0 23 36.52344048312057 35.0 35.0 40.0 33.0 41.0 24 36.438202421417635 35.0 35.0 40.0 33.0 41.0 25 36.42080062231428 35.0 35.0 40.0 33.0 41.0 26 36.36715508948029 35.0 35.0 40.0 33.0 41.0 27 36.2842739655931 35.0 35.0 40.0 32.0 41.0 28 36.197850327987794 36.0 35.0 40.0 32.0 41.0 29 36.08840325862159 36.0 35.0 40.0 32.0 41.0 30 35.849877016690456 36.0 35.0 40.0 31.0 41.0 31 35.44473116501084 36.0 35.0 40.0 30.0 41.0 32 34.98222476063965 35.0 35.0 40.0 27.0 41.0 33 34.47117112285991 35.0 34.0 40.0 23.0 41.0 34 33.94128394962821 35.0 34.0 40.0 18.0 41.0 35 33.670747804423264 35.0 34.0 40.0 17.0 41.0 36 33.45279695768948 35.0 33.0 40.0 15.0 41.0 37 33.42627365417752 35.0 33.0 40.0 15.0 41.0 38 33.398655873511004 35.0 33.0 40.0 15.0 41.0 39 33.352625808339866 35.0 33.0 40.0 15.0 41.0 40 33.165852700431785 35.0 33.0 40.0 15.0 41.0 41 33.04431921776542 35.0 33.0 40.0 12.0 41.0 42 32.94823975898243 35.0 33.0 40.0 10.0 41.0 43 32.79466536070259 35.0 33.0 40.0 10.0 41.0 44 32.65638198415657 35.0 33.0 40.0 10.0 41.0 45 32.5913581531118 35.0 33.0 40.0 10.0 41.0 46 32.526466770601075 35.0 33.0 40.0 10.0 41.0 47 32.533014896906586 35.0 32.0 40.0 10.0 41.0 48 32.493623410698355 35.0 32.0 40.0 10.0 41.0 49 32.41488824897223 35.0 32.0 40.0 10.0 41.0 50 32.22879353599467 35.0 32.0 40.0 10.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 3.0 12 6.0 13 14.0 14 9.0 15 28.0 16 125.0 17 266.0 18 689.0 19 1377.0 20 2638.0 21 4423.0 22 6947.0 23 11058.0 24 17163.0 25 28691.0 26 44747.0 27 53201.0 28 48924.0 29 41032.0 30 37570.0 31 39275.0 32 46480.0 33 59577.0 34 118799.0 35 275377.0 36 72528.0 37 88371.0 38 153623.0 39 394829.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.735608820684714 23.269010725746895 27.82549873333975 22.169881720228638 2 37.85876592855145 22.703810835065394 29.21504537815995 10.222377858223213 3 22.333084157798538 23.28761812955534 43.19256530843387 11.18673240421225 4 21.965071060253745 26.216604394319315 40.870322547715396 10.948001997711549 5 18.104810078493525 30.119571952181555 40.22933625193908 11.54628171738584 6 16.298535119213373 38.23640577320547 37.11421134004966 8.350847767531503 7 77.64630555812198 3.398823210927198 17.72135542014936 1.2335158108014685 8 77.25309493458657 3.0760364420834865 17.512086736345363 2.158781886984573 9 75.29201671306673 3.773814084900157 18.761754807397217 2.172414394635899 10 44.007285315463335 23.333038285379427 23.97945174059987 8.68022465855737 11 38.28880370545772 17.44037070083365 32.86287183310709 11.407953760601536 12 37.48099686581542 18.241393591170787 34.066150612719845 10.21145893029395 13 14.931149375456707 40.72101105396083 31.81168273601198 12.53615683457049 14 9.513358242272274 41.328400648416334 35.79709143019219 13.361149679119197 15 8.417072034558084 22.441304301476123 58.09625584146492 11.045367822500873 16 9.774443376959512 17.81620149233963 54.88363588670418 17.52571924399669 17 9.92931124824021 20.03003028225752 36.42838636981827 33.612272099684 18 12.676035408338832 23.624425060296385 47.062259210180315 16.637280321184463 19 18.119928594087888 23.277539119159098 38.215343225838964 20.38718906091405 20 21.91047642060744 20.081006815607736 41.30481834845077 16.70369841533405 21 14.782936235399163 27.501355174635005 40.65039337214614 17.06531521781969 22 19.394018882638324 19.756798647861988 34.83958544254932 26.00959702695037 23 12.22726100954211 26.15244761660478 34.977138090841606 26.643153283011507 24 11.382885452692937 22.40383105769523 52.96881773854143 13.244465751070411 25 11.232798650446352 25.9857562908208 46.11366927019566 16.66777578853719 26 10.873701600559773 30.7114553767967 37.21551831634008 21.19932470630345 27 11.753289084754787 36.90591179186068 34.38887277252255 16.95192635086198 28 10.028356908095578 30.497470232999586 43.1771237476345 16.297049111270336 29 9.76391210327626 22.6829421148219 41.848632646560766 25.704513135341077 30 12.318682802559293 32.45693322849439 38.685180172002184 16.539203796944122 31 19.2506514206559 31.49115728360332 34.04586337384535 15.212327921895422 32 20.665266373384693 24.925780364149478 37.03261012126471 17.37634314120112 33 21.147508255420213 31.073718269692353 31.111708385801258 16.667065089086176 34 15.3537571126478 26.73425203082368 34.70571550959412 23.206275346934397 35 16.554645357743492 27.514406200917318 33.15135120117898 22.779597240160204 36 25.584081882914205 27.82136375471565 31.615594296572297 14.978960065797848 37 14.91964896615843 31.395858948126047 38.13374200705402 15.550750078661506 38 14.191052810784024 30.220039010938958 35.11242942269884 20.476478755578185 39 16.34737955421054 30.04372093804574 36.232427148460594 17.376472359283124 40 18.673175812184102 26.340976798247283 32.99764629263631 21.988201096932297 41 13.116087586600344 27.59200165916017 35.85633792079061 23.435572833448877 42 17.207907371310096 26.01379661461547 32.90357552893807 23.874720485136365 43 16.770891817975656 24.39979816135591 34.8428158945994 23.98649412606904 44 14.599704995118786 26.758351203117257 34.249963334369234 24.391980467394724 45 13.862515837291175 36.70820812639596 29.738443219313453 19.690832816999414 46 20.80333589400499 30.93099689811994 32.24411104743531 16.021556160439754 47 15.923544245240414 30.539595327732588 33.74930787564827 19.787552551378727 48 16.540108323518144 28.115076455108667 35.26529441370849 20.0795208076647 49 20.050446739214006 24.741063115926064 35.77195851324259 19.43653163161734 50 18.448465567580737 29.421794309364884 31.95188435498533 20.17785576806905 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3529.0 1 4670.5 2 5812.0 3 22079.5 4 38347.0 5 28895.0 6 19443.0 7 21468.0 8 23493.0 9 26157.5 10 28822.0 11 28770.5 12 28719.0 13 26883.5 14 25048.0 15 22321.5 16 19595.0 17 18449.5 18 17304.0 19 16589.5 20 15875.0 21 14363.5 22 12852.0 23 13504.5 24 14157.0 25 16214.0 26 18271.0 27 20322.0 28 22373.0 29 31381.5 30 40390.0 31 47737.0 32 55084.0 33 69323.0 34 83562.0 35 84619.5 36 85677.0 37 83115.5 38 80554.0 39 90232.5 40 99911.0 41 115409.5 42 130908.0 43 137594.5 44 144281.0 45 136724.0 46 129167.0 47 118996.0 48 108825.0 49 99070.5 50 89316.0 51 74185.0 52 59054.0 53 49325.5 54 39597.0 55 33957.0 56 28317.0 57 23347.0 58 18377.0 59 16703.5 60 15030.0 61 14809.0 62 14588.0 63 12562.5 64 10537.0 65 8697.0 66 6857.0 67 6092.0 68 5327.0 69 4438.5 70 3550.0 71 2860.0 72 2170.0 73 1852.5 74 1535.0 75 1063.5 76 592.0 77 474.0 78 356.0 79 325.5 80 295.0 81 229.5 82 164.0 83 97.0 84 30.0 85 40.0 86 50.0 87 31.5 88 13.0 89 8.5 90 4.0 91 8.0 92 12.0 93 6.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1547771.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.401961979589636 #Duplication Level Percentage of deduplicated Percentage of total 1 79.39455634350165 16.991992762500093 2 8.659920189436452 3.706785652811992 3 3.4895623966575156 2.2405044521600948 4 1.811508925406648 1.5507938058896142 5 1.0960552349429311 1.17288662328894 6 0.7639690462395923 0.9810261888721866 7 0.5071710944874301 0.7598119536956789 8 0.38337771762177286 0.6564028269090426 9 0.3000738574222721 0.577995235885824 >10 2.211897555125968 10.214566447025659 >50 0.6911057915032242 10.833202364604231 >100 0.5668585082337515 23.95865094323125 >500 0.08232511025257054 12.468144183650658 >1k 0.041314446473614735 12.362038958134326 >5k 0.0 0.0 >10k+ 3.037826946589319E-4 1.52519760134045 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 23459 1.515663492855209 No Hit ATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCC 4506 0.2911283387529551 No Hit AGTGTTGGGTTAACAGAGAAGTTATAGGTGGATTATTTATAGTGTGATTA 3017 0.19492547670165677 No Hit GTAAAAGGGATGCCACAACTAGATACATCAACATGATTTATCACAATTAT 2780 0.17961313398429096 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2636 0.17030943208006868 No Hit ACTTAGGGGATTTTTGAAAGATTCAACTTGTACTGCTGGTATTGTGTAGT 2279 0.14724400444251767 No Hit ACCAAAGAATATCCCAATTATCCATAAAACTGTAACTAAGTGAGGCTCTC 2150 0.13890943815331855 No Hit TGTGTTGGGTTAACAGAGAAGTTATAGGTGGATTATTTATAGTGTGATTA 2117 0.1367773398002676 No Hit GAATTAGGGGAGGTTTCCTCCTATGGTTTTCAAAACAATCACCATCATGC 1895 0.12243413269792496 No Hit CTCACTGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 1865 0.12049586146787865 No Hit GATAAAGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 1839 0.11881602640183853 No Hit TTAGCTGGGCAAAACAATCACCATCATGCTATTAATGATATTAAAATCCC 1819 0.11752384558180766 No Hit TTAAATGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 1801 0.11636088284377986 No Hit GTCGACGGGGGTTTTTAATATTCGATAAATCCATAAATAAAAATATATCA 1736 0.11216129517867954 No Hit AGCTATGGGACAACCTCAATCTTATTAATCTTCATTCTTCTACTATCCCC 1733 0.1119674680556749 No Hit ATAGATGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGG 1722 0.11125676860465793 No Hit TAGTTAGGGATGCCACAACTAGATACATCAACATGATTTATCACAATTAT 1722 0.11125676860465793 No Hit TAAGTTGGGATGATATTAAAATCCCAACTATACCAAAGATATCCCAATTA 1662 0.10738022614456531 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCGTCTGAATCGTATGC 1651 0.10666952669354833 No Hit AAGCACGGGATCAACAATAATTTTAAATAATCTAAGTATAGGTAATATAA 1645 0.10628187244753907 No Hit TTTCTTGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 1642 0.10608804532453445 No Hit GACATCGGGATGATATTAAAATCCCAACTATACCAAAGAATATCCCAATT 1633 0.10550656395552055 No Hit AATACGGGGAATAGGAGGTTTCCTCCTATGGTTTTCAAAACAATCACCAT 1612 0.10414977409448814 No Hit GGAACTGGGAATCTAAGTATAGGTAATATAACAATTAAAAAGATTTAGAG 1609 0.10395594697148351 No Hit TTACGAGGGGGTTTTCAAAACAATCACCATCATGCTATTAATGATATTAA 1591 0.10279298423345573 No Hit GAGATTGGGGGGAATTCATCGACAATAAACAAAGAAATAGAACTTTTAAC 1586 0.102469939028448 No Hit TGGTAGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAATT 1581 0.10214689382344029 No Hit TGGAGAGTTGTATTTTGTTTAAAGAACATTTTCTGATTTTCGAATGTATT 1551 0.10020862259339398 No Hit GTTCTAGGGAAGTCTAGTGGAACAGTCAGTTTAACTTTTTAACAGATCTT 1549 0.10007940451139088 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.09025883027915628 0.0 2 0.0 0.0 0.0 0.36374890083868994 0.0 3 0.0 0.0 0.0 0.5332184153857386 0.0 4 0.0 0.0 0.0 0.9328253339802852 0.0 5 0.0 0.0 0.0 1.5779466083806972 0.0 6 0.0 0.0 0.0 2.212924263343867 0.0 7 0.0 0.0 0.0 2.554964526406038 0.0 8 6.460904100154351E-5 0.0 0.0 3.3921038706630373 0.0 9 6.460904100154351E-5 0.0 0.0 3.7067499003405544 0.0 10 6.460904100154351E-5 0.0 0.0 4.260320163641779 0.0 11 6.460904100154351E-5 0.0 0.0 4.884960372044702 0.0 12 6.460904100154351E-5 0.0 0.0 5.417597306061427 0.0 13 6.460904100154351E-5 0.0 0.0 5.599342538398768 0.0 14 6.460904100154351E-5 0.0 0.0 5.6601396459812205 0.0 15 6.460904100154351E-5 0.0 0.0 5.761963494599653 0.0 16 6.460904100154351E-5 0.0 0.0 5.993328470426181 0.0 17 6.460904100154351E-5 0.0 0.0 6.268369157969751 0.0 18 6.460904100154351E-5 0.0 0.0 6.792865352820281 0.0 19 6.460904100154351E-5 0.0 0.0 6.976031984059658 0.0 20 6.460904100154351E-5 0.0 0.0 7.173864867606383 0.0 21 6.460904100154351E-5 0.0 0.0 7.474038472099555 0.0 22 6.460904100154351E-5 0.0 0.0 7.735963524319812 0.0 23 1.2921808200308703E-4 0.0 0.0 8.090279505172276 0.0 24 1.2921808200308703E-4 0.0 0.0 8.330625137698018 0.0 25 1.2921808200308703E-4 0.0 0.0 8.514373250306408 0.0 26 1.2921808200308703E-4 0.0 0.0 8.737080614638728 0.0 27 1.2921808200308703E-4 0.0 0.0 8.90835918233382 0.0 28 1.2921808200308703E-4 0.0 0.0 9.095143919869283 0.0 29 1.2921808200308703E-4 0.0 0.0 9.316559103381573 0.0 30 1.2921808200308703E-4 0.0 0.0 9.684701419008368 0.0 31 1.2921808200308703E-4 0.0 0.0 10.047028920945024 0.0 32 1.9382712300463053E-4 0.0 0.0 10.299844098384064 0.0 33 1.9382712300463053E-4 0.0 0.0 10.51654282190324 0.0 34 1.9382712300463053E-4 0.0 0.0 10.756306973059969 0.0 35 1.9382712300463053E-4 0.0 0.0 11.143702782905223 0.0 36 1.9382712300463053E-4 0.0 0.0 11.400394502804355 0.0 37 1.9382712300463053E-4 0.0 0.0 11.661091983245583 0.0 38 1.9382712300463053E-4 0.0 0.0 11.90751086562547 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATTTCG 80 0.0 44.000004 19 AGCCGAA 20 7.857327E-4 44.000004 37 TCCGCGT 20 7.857327E-4 44.000004 23 CGTATGG 55 1.8189894E-12 44.000004 2 GGTCGTA 20 7.857327E-4 44.000004 8 ACGTTGG 65 0.0 44.000004 2 TAGCGTC 40 8.3164196E-9 44.000004 32 GACGTAA 20 7.857327E-4 44.000004 26 GATCCGC 20 7.857327E-4 44.000004 10 TAAGTGC 20 7.857327E-4 44.000004 32 CCTAAGT 65 0.0 44.000004 20 TACATAG 65 0.0 44.000004 1 ATCCGCC 20 7.857327E-4 44.000004 11 CGTAGTG 20 7.857327E-4 44.000004 38 TACGATG 65 0.0 44.000004 1 ATATACG 20 7.857327E-4 44.000004 1 CAAGGCA 20 7.857327E-4 44.000004 44 ACGGATT 20 7.857327E-4 44.000004 40 ACTACGG 20 7.857327E-4 44.000004 2 GAACGAT 20 7.857327E-4 44.000004 9 >>END_MODULE