##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546258_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1586086 Sequences flagged as poor quality 0 Sequence length 50 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.85424434740613 31.0 31.0 34.0 30.0 34.0 2 32.25082435630855 33.0 31.0 34.0 30.0 34.0 3 32.2281584983412 33.0 31.0 34.0 30.0 34.0 4 35.943992318197125 37.0 35.0 37.0 35.0 37.0 5 35.8573368657185 37.0 35.0 37.0 35.0 37.0 6 35.9530454212445 37.0 35.0 37.0 35.0 37.0 7 36.182553783338356 37.0 35.0 37.0 35.0 37.0 8 36.08158384854289 37.0 35.0 37.0 35.0 37.0 9 37.88220500023328 39.0 38.0 39.0 35.0 39.0 10 37.565322435227344 39.0 37.0 39.0 35.0 39.0 11 37.32893424442307 39.0 37.0 39.0 34.0 39.0 12 36.45890323727717 38.0 35.0 39.0 33.0 39.0 13 36.08266449612442 38.0 35.0 39.0 32.0 39.0 14 37.187325277443975 39.0 35.0 41.0 33.0 41.0 15 37.489708628662 40.0 35.0 41.0 33.0 41.0 16 37.630103285698254 40.0 35.0 41.0 33.0 41.0 17 37.56404003313818 39.0 35.0 41.0 33.0 41.0 18 37.39053304801883 39.0 35.0 41.0 33.0 41.0 19 37.08330506668617 37.0 35.0 41.0 33.0 41.0 20 36.741212014985315 36.0 35.0 40.0 33.0 41.0 21 36.61102424458699 36.0 35.0 40.0 33.0 41.0 22 36.53062065991377 36.0 35.0 40.0 33.0 41.0 23 36.50514473994475 35.0 35.0 40.0 33.0 41.0 24 36.42262021101 35.0 35.0 40.0 33.0 41.0 25 36.39836931919202 35.0 35.0 40.0 33.0 41.0 26 36.36220104080107 35.0 35.0 40.0 33.0 41.0 27 36.269436209638066 35.0 35.0 40.0 32.0 41.0 28 36.17316400245636 36.0 35.0 40.0 32.0 41.0 29 36.065736031968 36.0 35.0 40.0 32.0 41.0 30 35.82683978044066 36.0 35.0 40.0 31.0 41.0 31 35.429607852285436 36.0 35.0 40.0 30.0 41.0 32 34.969444910301206 35.0 35.0 40.0 27.0 41.0 33 34.447840154947464 35.0 34.0 40.0 23.0 41.0 34 33.995744240854535 35.0 34.0 40.0 18.0 41.0 35 33.692149101625006 35.0 34.0 40.0 17.0 41.0 36 33.45524895875759 35.0 33.0 40.0 15.0 41.0 37 33.36837094583774 35.0 33.0 40.0 15.0 41.0 38 33.34847542945339 35.0 33.0 40.0 15.0 41.0 39 33.308681874753326 35.0 33.0 40.0 15.0 41.0 40 33.125436451743475 35.0 33.0 40.0 15.0 41.0 41 33.02781501129195 35.0 33.0 40.0 12.0 41.0 42 32.92014052201457 35.0 33.0 40.0 10.0 41.0 43 32.800378415798384 35.0 33.0 40.0 10.0 41.0 44 32.659301576333185 35.0 33.0 40.0 10.0 41.0 45 32.59336378985755 35.0 33.0 40.0 10.0 41.0 46 32.538591854413944 35.0 33.0 40.0 10.0 41.0 47 32.518655987128064 35.0 32.0 40.0 10.0 41.0 48 32.49229108635976 35.0 32.0 40.0 10.0 41.0 49 32.40392261201473 35.0 32.0 40.0 10.0 41.0 50 32.20971372296332 35.0 32.0 40.0 10.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 3.0 10 2.0 11 2.0 12 2.0 13 6.0 14 19.0 15 43.0 16 115.0 17 302.0 18 687.0 19 1502.0 20 2708.0 21 4537.0 22 7229.0 23 11141.0 24 17712.0 25 29413.0 26 45010.0 27 54062.0 28 50698.0 29 42154.0 30 39685.0 31 40710.0 32 48365.0 33 62369.0 34 124792.0 35 277514.0 36 75488.0 37 91202.0 38 158652.0 39 399962.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.903648351980912 23.30485232200524 27.77024701056563 22.021252315448216 2 37.90796968134136 22.67109097489039 29.2071804429268 10.213758900841443 3 22.167398236917794 23.345266271816282 43.26240821746109 11.224927273804825 4 22.049434898233766 26.229536103338656 40.76771373052912 10.95331526789846 5 18.206642010584545 29.931226932209228 40.247754535378284 11.614376521827946 6 16.271501040927163 38.242440826033395 37.11217424528052 8.373883887758923 7 77.60720414908145 3.4104077584695913 17.72325081994293 1.2591372725060306 8 77.18932012513824 3.107082465894031 17.518406946407698 2.185190462560038 9 75.24932443764084 3.7666305610162376 18.785866592353756 2.198178408989172 10 44.05542952904193 23.268473462346932 23.958095588763786 8.718001419847347 11 38.274091064418954 17.482973811003944 32.84689480898261 11.396040315594488 12 37.494940375238166 18.187412284075393 34.026717340673834 10.29093000001261 13 14.938218986864522 40.651452695503274 31.868574591793887 12.541753725838323 14 9.504339613362706 41.295553961134516 35.85934180113814 13.340764624364631 15 8.461079664028306 22.34090711348565 58.12515840881264 11.072854813673407 16 9.834523474767447 17.77602223334674 54.9251427728383 17.464311519047516 17 9.929032851938672 20.007237942961478 36.404205068325425 33.65952413677443 18 12.668480775947835 23.59708111666076 47.09082609644118 16.643612010950225 19 18.15500546628619 23.259457557786906 38.275856416360774 20.309680559566125 20 21.887337761004133 20.064927122488946 41.29794979591271 16.749785320594217 21 14.767862524478495 27.393596564120738 40.80119236914013 17.037348542260634 22 19.35178798627565 19.70498447120774 34.83121343987652 26.112014102640085 23 12.217559451379055 26.094297534938203 35.02792408482264 26.660218928860104 24 11.356572090037993 22.381888497849424 52.96944806271539 13.292091349397195 25 11.266602189288601 25.84134782098827 46.15254153936167 16.739508450361456 26 10.834658398094428 30.6270908387061 37.266768636757405 21.27148212644207 27 11.75970281561025 36.87568013335973 34.37234803156954 16.992269019460483 28 10.007969303051663 30.492987139411103 43.11664058569333 16.3824029718439 29 9.80501687802553 22.688744494308633 41.85037885713637 25.655859770529467 30 12.344475646339479 32.431911006086686 38.615308375460096 16.608304972113743 31 19.25299132581714 31.444007449785193 34.05748490308848 15.245516321309186 32 20.72031403089114 24.83894315945037 37.11166985901143 17.329072950647063 33 21.114554948470637 31.064015444307557 31.101970511056777 16.719459096165025 34 15.379304779185995 26.72553695070759 34.539047693504635 23.356110576601775 35 16.507175525160676 27.464841124630063 33.077021044256114 22.950962305953144 36 25.752575837627973 27.768418610340174 31.43083035850515 15.048175193526706 37 14.986955310115594 31.456491009945236 38.02637435801085 15.530179321928319 38 14.203012951378424 30.164379485097275 35.093368203237404 20.539239360286896 39 16.348546043531055 30.05114476768599 36.23914466176487 17.36116452701808 40 18.786686220041034 26.18552840136033 32.97690036984123 22.050885008757408 41 13.155717911891285 27.530474387895737 35.847677868665386 23.466129831547597 42 17.28588487635601 25.97816259647964 32.92526382554288 23.810688701621476 43 16.772608799270657 24.27113031701938 34.88694812261126 24.069312761098704 44 14.574115148863303 26.64092615406731 34.301040422776566 24.48391827429282 45 13.909397094482898 36.560312618609586 29.736722977190393 19.793567309717126 46 20.840925397487904 30.882940773703314 32.14750019860209 16.128633630206686 47 15.937219041086045 30.468650501927385 33.68278895343632 19.911341503550247 48 16.557740248637213 28.18113267502519 35.28415230952168 19.97697476681592 49 20.13182135142735 24.737624567646396 35.682932703523015 19.447621377403244 50 18.48708077620003 29.300996288978027 31.911699617801304 20.30022331702064 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3661.0 1 4830.0 2 5999.0 3 22789.5 4 39580.0 5 29672.0 6 19764.0 7 21750.5 8 23737.0 9 26362.0 10 28987.0 11 29177.5 12 29368.0 13 27497.5 14 25627.0 15 22801.0 16 19975.0 17 18698.5 18 17422.0 19 16722.0 20 16022.0 21 14665.0 22 13308.0 23 13911.0 24 14514.0 25 16605.0 26 18696.0 27 20785.5 28 22875.0 29 32086.5 30 41298.0 31 48701.0 32 56104.0 33 70474.0 34 84844.0 35 86279.0 36 87714.0 37 84664.5 38 81615.0 39 92110.0 40 102605.0 41 117898.0 42 133191.0 43 140693.5 44 148196.0 45 140607.5 46 133019.0 47 122945.5 48 112872.0 49 102614.5 50 92357.0 51 76694.5 52 61032.0 53 51060.5 54 41089.0 55 35033.5 56 28978.0 57 23955.5 58 18933.0 59 17299.0 60 15665.0 61 15618.5 62 15572.0 63 13101.0 64 10630.0 65 8761.0 66 6892.0 67 6036.0 68 5180.0 69 4397.0 70 3614.0 71 2881.0 72 2148.0 73 1875.5 74 1603.0 75 1053.5 76 504.0 77 426.5 78 349.0 79 316.0 80 283.0 81 226.5 82 170.0 83 91.0 84 12.0 85 33.5 86 55.0 87 32.0 88 9.0 89 8.5 90 8.0 91 9.0 92 10.0 93 5.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1586086.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.48515209265839 #Duplication Level Percentage of deduplicated Percentage of total 1 79.42293096479582 17.064137514233458 2 8.649511823082388 3.716721540923441 3 3.469153835278 2.2360589335133096 4 1.7981024067602764 1.5453001474967853 5 1.119338338960806 1.2024577227858264 6 0.762274825673934 0.9826554339605479 7 0.5372716725138799 0.8080354519326362 8 0.37456512301804895 0.6438070909318465 9 0.28780530581940256 0.5565186691743532 >10 2.219082976908196 10.264155691546211 >50 0.6721554391020229 10.55405832527385 >100 0.5608183941940188 23.4990557445351 >500 0.08564367262563934 12.94239910826595 >1k 0.041049898258496094 12.446913391140166 >5k 0.0 0.0 >10k+ 2.953230090539288E-4 1.5377252342865106 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 24235 1.5279751539323845 No Hit ATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCC 4704 0.2965791262264467 No Hit AGTGTTGGGTTAACAGAGAAGTTATAGGTGGATTATTTATAGTGTGATTA 3037 0.19147763740427695 No Hit GTAAAAGGGATGCCACAACTAGATACATCAACATGATTTATCACAATTAT 2889 0.1821464914260639 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2698 0.17010426925147817 No Hit ACTTAGGGGATTTTTGAAAGATTCAACTTGTACTGCTGGTATTGTGTAGT 2376 0.14980272192050118 No Hit ACCAAAGAATATCCCAATTATCCATAAAACTGTAACTAAGTGAGGCTCTC 2178 0.13731916176045939 No Hit TGTGTTGGGTTAACAGAGAAGTTATAGGTGGATTATTTATAGTGTGATTA 2098 0.13227529906953342 No Hit GAATTAGGGGAGGTTTCCTCCTATGGTTTTCAAAACAATCACCATCATGC 1916 0.12080051144767687 No Hit CTCACTGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 1886 0.11890906293857961 No Hit GATAAAGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 1852 0.11676542129493608 No Hit GTCGACGGGGGTTTTTAATATTCGATAAATCCATAAATAAAAATATATCA 1812 0.1142434899494731 No Hit TTAGCTGGGCAAAACAATCACCATCATGCTATTAATGATATTAAAATCCC 1796 0.11323471741128792 No Hit GAGATTGGGGGGAATTCATCGACAATAAACAAAGAAATAGAACTTTTAAC 1768 0.11146936546946383 No Hit ATAGATGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGG 1759 0.11090193091673466 No Hit AGCTATGGGACAACCTCAATCTTATTAATCTTCATTCTTCTACTATCCCC 1757 0.1107758343494615 No Hit TTAAATGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 1744 0.10995620666218603 No Hit TTTCTTGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 1736 0.10945182039309345 No Hit TTACGAGGGGGTTTTCAAAACAATCACCATCATGCTATTAATGATATTAA 1727 0.10888438584036426 No Hit AATACGGGGAATAGGAGGTTTCCTCCTATGGTTTTCAAAACAATCACCAT 1668 0.10516453710580638 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCGTCTGAATCGTATGC 1658 0.10453405426944062 No Hit AAGCACGGGATCAACAATAATTTTAAATAATCTAAGTATAGGTAATATAA 1653 0.10421881285125774 No Hit TAAGTTGGGATGATATTAAAATCCCAACTATACCAAAGATATCCCAATTA 1647 0.1038405231494383 No Hit GACATCGGGATGATATTAAAATCCCAACTATACCAAAGAATATCCCAATT 1630 0.10276870232761653 No Hit GGAACTGGGAATCTAAGTATAGGTAATATAACAATTAAAAAGATTTAGAG 1627 0.1025795574767068 No Hit TAGTTAGGGATGCCACAACTAGATACATCAACATGATTTATCACAATTAT 1624 0.10239041262579708 No Hit ATAGTAGGGCACCATCATGCTATTAATGATATTAAAATCCCAACTATACC 1621 0.10220126777488736 No Hit AGAGTGGGGGGAATTCATCGACAATAAACAAAGAAATAGAACTTTTAACA 1594 0.10049896411669985 No Hit GGTGTTGGGCATTTTGTAATTTTCATTTAAATTGTTAGGAGGCTTGGAGC 1589 0.10018372269851698 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.08959161104757245 0.0 2 0.0 0.0 0.0 0.361455810088482 0.0 3 0.0 0.0 0.0 0.5430979152454533 0.0 4 0.0 0.0 0.0 0.9498223929849958 0.0 5 0.0 0.0 0.0 1.6042635771326397 0.0 6 0.0 0.0 0.0 2.255300153963909 0.0 7 0.0 0.0 0.0 2.6046506935941682 0.0 8 0.0 0.0 0.0 3.457315681495203 0.0 9 0.0 0.0 0.0 3.76934163721261 0.0 10 0.0 0.0 0.0 4.335767417403596 0.0 11 0.0 0.0 0.0 4.984975594009405 0.0 12 0.0 0.0 0.0 5.529082281793043 0.0 13 0.0 0.0 0.0 5.724721105917333 0.0 14 0.0 0.0 0.0 5.787328051568452 0.0 15 0.0 0.0 0.0 5.892366492106985 0.0 16 0.0 0.0 0.0 6.142731226427823 0.0 17 0.0 0.0 0.0 6.436410131606987 0.0 18 0.0 0.0 0.0 6.976292584386975 0.0 19 0.0 0.0 0.0 7.175399064111278 0.0 20 0.0 0.0 0.0 7.3813147584683305 0.0 21 0.0 0.0 0.0 7.6893686723166335 0.0 22 0.0 0.0 0.0 7.963943947553916 0.0 23 0.0 0.0 0.0 8.337063690115164 0.0 24 0.0 0.0 0.0 8.59039169376692 0.0 25 0.0 0.0 0.0 8.778653868705732 0.0 26 0.0 0.0 0.0 9.015904560030162 0.0 27 0.0 0.0 0.0 9.196537892648948 0.0 28 0.0 0.0 0.0 9.394446454984156 0.0 29 0.0 0.0 0.0 9.62759900787221 0.0 30 0.0 0.0 0.0 9.99863815707345 0.0 31 6.304828363657456E-5 0.0 0.0 10.373964589561979 0.0 32 6.304828363657456E-5 0.0 0.0 10.644000388377426 0.0 33 6.304828363657456E-5 0.0 0.0 10.869839340363637 0.0 34 6.304828363657456E-5 0.0 0.0 11.120582364386294 0.0 35 6.304828363657456E-5 0.0 0.0 11.516651682191256 0.0 36 6.304828363657456E-5 0.0 0.0 11.786750529290341 0.0 37 6.304828363657456E-5 0.0 0.0 12.046572506156664 0.0 38 6.304828363657456E-5 0.0 0.0 12.29605456450659 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTTTGCG 30 2.528328E-6 44.000004 1 GGTACTC 20 7.8573864E-4 44.000004 8 GCCCATA 20 7.8573864E-4 44.000004 11 ACACGTC 20 7.8573864E-4 44.000004 27 CGAACGC 20 7.8573864E-4 44.000004 12 TCCGCGT 20 7.8573864E-4 44.000004 23 TTGTGCG 60 0.0 44.000004 1 GCGAACG 20 7.8573864E-4 44.000004 11 ACCGACA 20 7.8573864E-4 44.000004 18 ATTAACG 40 8.3164196E-9 44.000004 1 TTCGTGC 30 2.528328E-6 44.000004 39 CTAAGCG 40 8.3164196E-9 44.000004 1 TACGCGG 20 7.8573864E-4 44.000004 2 TACGATG 40 8.3164196E-9 44.000004 1 CGGATGT 20 7.8573864E-4 44.000004 37 CTGCCTA 20 7.8573864E-4 44.000004 25 ACGGACT 30 2.528328E-6 44.000004 44 ACTACGG 40 8.3164196E-9 44.000004 2 TGTTACG 40 8.3164196E-9 44.000004 1 ACGTCGA 20 7.8573864E-4 44.000004 29 >>END_MODULE