##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546257_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1761570 Sequences flagged as poor quality 0 Sequence length 50 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.926269180333453 33.0 31.0 34.0 30.0 34.0 2 32.2763710780724 33.0 31.0 34.0 30.0 34.0 3 32.155374467094695 33.0 31.0 34.0 30.0 34.0 4 35.91777959433914 37.0 35.0 37.0 35.0 37.0 5 35.93026107392837 37.0 35.0 37.0 35.0 37.0 6 35.98057584995203 37.0 35.0 37.0 35.0 37.0 7 36.20993204925152 37.0 35.0 37.0 35.0 37.0 8 36.119045510538896 37.0 36.0 37.0 35.0 37.0 9 37.876534000919634 39.0 38.0 39.0 35.0 39.0 10 37.47784987255687 39.0 37.0 39.0 35.0 39.0 11 37.31929869377885 39.0 37.0 39.0 34.0 39.0 12 36.79570667075393 39.0 35.0 39.0 33.0 39.0 13 36.62748059969232 39.0 35.0 39.0 33.0 39.0 14 37.730600543833056 40.0 35.0 41.0 33.0 41.0 15 37.903368018301855 40.0 35.0 41.0 33.0 41.0 16 38.00421044863389 40.0 35.0 41.0 33.0 41.0 17 37.913675301009896 40.0 35.0 41.0 33.0 41.0 18 37.680142145926645 39.0 36.0 41.0 33.0 41.0 19 37.41773304495422 38.0 36.0 41.0 33.0 41.0 20 37.109446686762375 38.0 35.0 41.0 33.0 41.0 21 36.99047270332714 38.0 35.0 41.0 33.0 41.0 22 36.89508676918885 38.0 35.0 41.0 33.0 41.0 23 36.862045221024424 38.0 35.0 41.0 33.0 41.0 24 36.77232184925947 38.0 35.0 41.0 33.0 41.0 25 36.75340463336683 38.0 35.0 41.0 33.0 41.0 26 36.67147828357658 38.0 35.0 41.0 33.0 41.0 27 36.59472118621457 38.0 35.0 41.0 32.0 41.0 28 36.501836997678204 38.0 35.0 41.0 32.0 41.0 29 36.388026022241526 38.0 35.0 41.0 32.0 41.0 30 36.1406603200554 38.0 35.0 41.0 31.0 41.0 31 35.75724779600016 38.0 35.0 41.0 30.0 41.0 32 35.334478902342795 38.0 35.0 41.0 27.0 41.0 33 34.85505883955789 38.0 35.0 41.0 23.0 41.0 34 34.34109402408079 38.0 34.0 41.0 19.0 41.0 35 34.06090305806752 37.0 34.0 41.0 18.0 41.0 36 33.890671957401636 37.0 34.0 40.0 16.0 41.0 37 33.82932668017734 37.0 34.0 40.0 16.0 41.0 38 33.76138160845155 37.0 33.0 40.0 15.0 41.0 39 33.68041633315735 37.0 33.0 40.0 15.0 41.0 40 33.51226519525196 37.0 33.0 40.0 15.0 41.0 41 33.38705075585983 37.0 33.0 40.0 13.0 41.0 42 33.29355007181094 36.0 33.0 40.0 12.0 41.0 43 33.16797969992677 36.0 33.0 40.0 10.0 41.0 44 33.009627207547815 36.0 33.0 40.0 10.0 41.0 45 32.959172215693954 36.0 33.0 40.0 10.0 41.0 46 32.91830185573097 36.0 33.0 40.0 10.0 41.0 47 32.90638805156764 36.0 33.0 40.0 10.0 41.0 48 32.814959382823275 35.0 33.0 40.0 10.0 41.0 49 32.74146131008135 36.0 32.0 40.0 10.0 41.0 50 32.565333764766656 35.0 32.0 40.0 10.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 3.0 11 1.0 12 6.0 13 10.0 14 21.0 15 43.0 16 123.0 17 320.0 18 695.0 19 1589.0 20 2819.0 21 4858.0 22 7585.0 23 11991.0 24 19008.0 25 31041.0 26 46731.0 27 56235.0 28 53971.0 29 47207.0 30 43614.0 31 45042.0 32 51648.0 33 65952.0 34 122648.0 35 228594.0 36 94420.0 37 121345.0 38 208360.0 39 495689.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.599084907213452 22.21915677492237 24.164921064732027 22.01683725313215 2 38.56809550571365 23.005103402078827 27.466578109300226 10.960222982907293 3 26.927229687154075 23.0041383538548 39.50356784005177 10.565064118939354 4 22.995225849668195 24.936789341326204 39.80137036847812 12.266614440527485 5 19.900770335552945 31.294810878931862 38.0214240705734 10.782994714941784 6 18.874924073411787 38.008537838405516 35.25383606669051 7.862702021492192 7 76.29580431092718 3.531224986801546 18.58751000527938 1.5854606969918879 8 76.6195496063171 3.100529641172363 18.32955829175111 1.950362460759436 9 73.22314753316644 4.201592897245071 20.163660825286534 2.411598744301958 10 39.12050046265547 24.154078464097367 27.069886521682363 9.655534551564797 11 33.363533665991135 21.672655642409897 33.80132495444405 11.162485737154924 12 31.2107381483563 21.14500133403725 36.220530549453045 11.423729968153408 13 19.122771164359065 31.837962726431535 36.07611392110447 12.963152188104928 14 13.951588639679377 32.775932832643605 38.82286823685689 14.44961029082012 15 12.90621434288731 22.923414908292035 51.30661852779055 12.863752221030103 16 14.803669453953008 20.669402862219496 48.47062563508688 16.056302048740612 17 15.124349302043063 20.750410145495213 38.64637794694505 25.47886260551667 18 17.629444188990504 24.027543611664594 43.05301520802466 15.289996991320242 19 20.605879982061456 24.049172045391327 37.7329314191318 17.61201655341542 20 21.57762677611449 23.191244174230942 39.43720658276424 15.793922466890331 21 19.359832422214275 24.85549822033754 40.37653910999847 15.40813024744972 22 18.810549680114896 22.586386007936103 37.5405462172948 21.0625180946542 23 14.824049001742765 25.915915915915917 36.750966467412596 22.50906861492873 24 14.631379962192817 23.81517623483597 46.97650391412206 14.576939888849152 25 15.402850865988862 24.189160805417895 43.615695090175244 16.792293238418 26 13.637039686189025 29.25577751664708 38.2568958372361 18.850286959927793 27 14.276923426261801 31.109294549748235 38.335348581095275 16.27843344289469 28 13.18732721379224 27.177574549975308 42.76594174514779 16.86915649108466 29 14.098673342529674 24.75076210425927 40.72917908456661 20.42138546864445 30 16.321463240177795 30.531230663555803 37.56427505009736 15.583031046169044 31 19.829981209943405 28.89876644129952 36.18510760287698 15.086144745880095 32 20.749161259558235 25.691002912174937 37.081523867913276 16.478311960353548 33 21.46863309434198 28.331488388199162 32.945554249902074 17.254324267556783 34 16.996486089113688 27.940416787297696 34.82069971672996 20.242397406858654 35 18.103793774871278 26.51163450785379 34.74258757812633 20.6419841391486 36 24.96449190211005 26.978320475484935 32.44299119535414 15.614196427050869 37 16.915422038295382 30.767213338101808 36.16115169990407 16.156212923698746 38 17.268175547948704 30.118246791214652 33.45884636999949 19.15473129083715 39 17.944560817906755 27.78368160220712 35.124292534500476 19.14746504538565 40 19.99171193878188 25.45337397889383 34.17882911266654 20.376084969657747 41 16.107846977412194 26.1430428538179 35.96950447612073 21.77960569264917 42 18.471023007885012 27.131819910647888 32.53450047400898 21.86265660745812 43 18.311279143037176 26.232565268482094 33.78355671361342 21.672598874867305 44 16.115340293034055 29.3719806763285 32.93181650459533 21.58086252604211 45 16.26588781598233 32.930340548488 31.229868810209076 19.573902825320594 46 19.541829163757328 29.90639032226934 33.08849492214331 17.463285591830015 47 16.7285432880896 28.472385428907167 35.0481104923449 19.750960790658333 48 17.80298256668767 27.260341627071305 36.20389765947422 18.732778146766805 49 19.048462451108954 27.106785424365764 34.85799599221149 18.98675613231379 50 18.32461951554579 28.735332686183344 34.05342961108557 18.886618187185295 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2835.0 1 7149.5 2 11464.0 3 32945.5 4 54427.0 5 40127.5 6 25828.0 7 26613.5 8 27399.0 9 28881.5 10 30364.0 11 29708.5 12 29053.0 13 27702.0 14 26351.0 15 23349.0 16 20347.0 17 18815.5 18 17284.0 19 15691.0 20 14098.0 21 17392.0 22 20686.0 23 19140.5 24 17595.0 25 20798.0 26 24001.0 27 29025.0 28 34049.0 29 37985.0 30 41921.0 31 49008.5 32 56096.0 33 68787.5 34 81479.0 35 90321.5 36 99164.0 37 97613.5 38 96063.0 39 100909.0 40 105755.0 41 122875.5 42 139996.0 43 138003.0 44 136010.0 45 125761.0 46 115512.0 47 111380.0 48 107248.0 49 101729.5 50 96211.0 51 82926.0 52 69641.0 53 60634.5 54 51628.0 55 45878.0 56 40128.0 57 38233.0 58 36338.0 59 34347.5 60 32357.0 61 30219.5 62 28082.0 63 24585.5 64 21089.0 65 18706.0 66 16323.0 67 13859.5 68 11396.0 69 10279.5 70 9163.0 71 7493.0 72 5823.0 73 4735.5 74 3648.0 75 2886.0 76 2124.0 77 1658.5 78 1193.0 79 956.5 80 720.0 81 575.5 82 431.0 83 302.5 84 174.0 85 107.5 86 41.0 87 30.0 88 19.0 89 12.5 90 6.0 91 6.5 92 7.0 93 4.0 94 1.0 95 1.0 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1761570.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.5690826176546 #Duplication Level Percentage of deduplicated Percentage of total 1 80.16491639835144 19.69578454028471 2 8.210947322663591 4.034708862794632 3 3.054664026341778 2.2515087849710578 4 1.5884882881441953 1.5611079995436585 5 1.0298792399448604 1.2651594066206302 6 0.7111751460134704 1.0483752550816519 7 0.5063424359801757 0.8708258399694996 8 0.39162665641634536 0.7697526141415217 9 0.3320702787467079 0.7342795902055914 >10 2.737314393732374 15.099879738427127 >50 0.7596012802040164 13.16565212319523 >100 0.4332508068020966 21.12788212343665 >500 0.059269825941824936 10.02171874473218 >1k 0.02022147002721086 6.676672519575439 >5k 0.0 0.0 >10k+ 2.324306899679409E-4 1.6766918570204028 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 29361 1.6667518179805514 No Hit ATGTAGGGGGTATTACTAGCGTTTCTGTGGCATGATTATGCATTCTGTAA 2387 0.13550412416196914 No Hit TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2152 0.12216375165335469 No Hit AATGCAGGGATTTCGTGTTTGTTTTAACCTTGACTCTCTTTTGATTCTTT 1899 0.10780156337812292 No Hit GGTGGGTGGATATGGGGGACTTTTGGTATAGCATTGGAAATATAAATGAG 1861 0.10564439675970867 No Hit AGACGAGGGAAATTCCTAAACCAACAACATTTTTTGAAGATGCAGTATAG 1781 0.10110299335252075 No Hit GGTTTGAGGAGATGAGGTAATTTTTATTATTTTAGGAGTTTCAAGCATTG 1774 0.10070562055439182 No Hit TATGAAGGGACCAAACACAAATACGAAAAATTATAGCCTATTCATCAATT 1771 0.10053531792662228 No Hit GTAAGAGGGCTTACTTTATTGTTGTAACCATTTCATAATGTAAATGTTTA 1766 0.10025148021367303 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.09332584001771148 0.0 2 0.0 0.0 0.0 0.31829561130128237 0.0 3 0.0 0.0 0.0 0.44653349001175086 0.0 4 0.0 0.0 0.0 0.6926207871387455 0.0 5 0.0 0.0 0.0 1.1334775228915115 0.0 6 0.0 0.0 0.0 1.5309070885630431 0.0 7 0.0 0.0 0.0 1.7686495569293301 0.0 8 0.0 0.0 0.0 2.33575730740192 0.0 9 0.0 0.0 0.0 2.5719670521182807 0.0 10 0.0 0.0 0.0 3.010496318624863 0.0 11 0.0 0.0 0.0 3.539853653275203 0.0 12 0.0 0.0 0.0 3.9986489324863617 0.0 13 0.0 0.0 0.0 4.166907928722673 0.0 14 0.0 0.0 0.0 4.2304308088807145 0.0 15 0.0 0.0 0.0 4.342206100240126 0.0 16 0.0 0.0 0.0 4.5775075642750505 0.0 17 0.0 0.0 0.0 4.8575986194133645 0.0 18 0.0 0.0 0.0 5.320651464318761 0.0 19 0.0 0.0 0.0 5.509687381142958 0.0 20 0.0 0.0 0.0 5.733181196319192 0.0 21 0.0 0.0 0.0 6.011569225179811 0.0 22 0.0 0.0 0.0 6.28257747350375 0.0 23 0.0 0.0 0.0 6.589462808744472 0.0 24 0.0 0.0 0.0 6.815227325624301 0.0 25 0.0 0.0 0.0 7.003638799480009 0.0 26 0.0 0.0 0.0 7.200338334553836 0.0 27 0.0 0.0 0.0 7.426897597029922 0.0 28 0.0 0.0 0.0 7.635120943249488 0.0 29 0.0 0.0 0.0 7.895116288310995 0.0 30 0.0 0.0 0.0 8.20909756637545 0.0 31 0.0 0.0 0.0 8.500428594946554 0.0 32 0.0 0.0 0.0 8.76451120307453 0.0 33 0.0 0.0 0.0 9.014799298353173 0.0 34 0.0 0.0 0.0 9.261851643704196 0.0 35 0.0 0.0 0.0 9.558178216023206 0.0 36 0.0 0.0 0.0 9.807047122737103 0.0 37 0.0 0.0 0.0 10.07510345884637 0.0 38 0.0 0.0 0.0 10.369727004887686 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGTCTA 75 0.0 44.000004 31 CGGCGTA 25 4.4438093E-5 44.0 21 CCTTACG 30 2.5284899E-6 44.0 28 ACGCCTA 25 4.4438093E-5 44.0 10 ACGTTAG 20 7.857626E-4 44.0 1 ATCGTAG 40 8.3164196E-9 44.0 1 ACGATTC 20 7.857626E-4 44.0 30 AACGCAC 30 2.5284899E-6 44.0 32 TGTTACG 30 2.5284899E-6 44.0 1 CGTACTC 20 7.857626E-4 44.0 44 ACGTCGT 20 7.857626E-4 44.0 15 ACCGTAA 25 4.4438093E-5 44.0 35 ACGTAAG 20 7.857626E-4 44.0 1 ACATCGC 20 7.857626E-4 44.0 9 ATACGAT 55 1.8189894E-12 44.0 44 GCCACTA 20 7.857626E-4 44.0 10 CGTTTCG 35 1.4466787E-7 44.0 42 CCGTTTA 25 4.4438093E-5 44.0 28 CCGTTCA 20 7.857626E-4 44.0 22 ATCGCAA 30 2.5284899E-6 44.0 14 >>END_MODULE