##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546254_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 844407 Sequences flagged as poor quality 0 Sequence length 50 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.805872049852738 31.0 31.0 34.0 30.0 34.0 2 32.20498882647823 33.0 31.0 34.0 30.0 34.0 3 32.21327274643625 33.0 31.0 34.0 30.0 34.0 4 35.90531817002938 37.0 35.0 37.0 35.0 37.0 5 35.84430020120629 37.0 35.0 37.0 35.0 37.0 6 35.91967262232549 37.0 35.0 37.0 35.0 37.0 7 36.15690301004137 37.0 35.0 37.0 35.0 37.0 8 36.05732425240435 37.0 35.0 37.0 35.0 37.0 9 37.8382746708637 39.0 38.0 39.0 35.0 39.0 10 37.50392760836895 39.0 37.0 39.0 35.0 39.0 11 37.276337121790796 39.0 37.0 39.0 34.0 39.0 12 36.52741628148512 39.0 35.0 39.0 33.0 39.0 13 36.249492247222015 39.0 35.0 39.0 32.0 39.0 14 37.37014022858645 40.0 35.0 41.0 33.0 41.0 15 37.62624540061842 40.0 35.0 41.0 33.0 41.0 16 37.749965360306106 40.0 35.0 41.0 33.0 41.0 17 37.69481067778926 40.0 35.0 41.0 33.0 41.0 18 37.529621379263794 39.0 36.0 41.0 33.0 41.0 19 37.262336764143356 38.0 35.0 41.0 33.0 41.0 20 36.883032708160876 37.0 35.0 41.0 33.0 41.0 21 36.80489148005642 37.0 35.0 41.0 33.0 41.0 22 36.73756020497225 37.0 35.0 41.0 33.0 41.0 23 36.69358496554387 37.0 35.0 41.0 33.0 41.0 24 36.656273574236124 37.0 35.0 41.0 33.0 41.0 25 36.59723450895125 37.0 35.0 41.0 33.0 41.0 26 36.52706810815164 37.0 35.0 41.0 33.0 41.0 27 36.452973506851556 37.0 35.0 41.0 32.0 41.0 28 36.39111589553379 37.0 35.0 41.0 32.0 41.0 29 36.31160565935621 37.0 35.0 41.0 32.0 41.0 30 36.10539704194778 37.0 35.0 40.0 31.0 41.0 31 35.73423479435864 37.0 35.0 40.0 30.0 41.0 32 35.29300917685429 37.0 35.0 41.0 29.0 41.0 33 34.80772660577186 37.0 35.0 41.0 23.0 41.0 34 34.354732966448644 36.0 34.0 40.0 21.0 41.0 35 34.04984918410198 36.0 34.0 40.0 18.0 41.0 36 33.847291649642884 36.0 34.0 40.0 18.0 41.0 37 33.73398136206829 36.0 33.0 40.0 17.0 41.0 38 33.701685324730846 36.0 33.0 40.0 17.0 41.0 39 33.63489999490767 36.0 33.0 40.0 16.0 41.0 40 33.51123687984585 36.0 33.0 40.0 15.0 41.0 41 33.42871624702306 36.0 33.0 40.0 15.0 41.0 42 33.31849925450642 36.0 33.0 40.0 14.0 41.0 43 33.210843822943204 35.0 33.0 40.0 12.0 41.0 44 33.05293655784474 35.0 33.0 40.0 10.0 41.0 45 33.00265985478567 35.0 33.0 40.0 10.0 41.0 46 32.95970545009693 35.0 33.0 40.0 10.0 41.0 47 32.906644544633096 35.0 33.0 40.0 10.0 41.0 48 32.84195062333685 35.0 33.0 40.0 10.0 41.0 49 32.79521131397537 36.0 33.0 40.0 10.0 41.0 50 32.5717195617753 35.0 32.0 40.0 10.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 0.0 11 2.0 12 2.0 13 3.0 14 5.0 15 14.0 16 46.0 17 159.0 18 350.0 19 764.0 20 1351.0 21 2277.0 22 3559.0 23 5390.0 24 8663.0 25 14439.0 26 22280.0 27 27029.0 28 25729.0 29 22523.0 30 20896.0 31 21487.0 32 25500.0 33 33140.0 34 62959.0 35 128814.0 36 43877.0 37 53852.0 38 91915.0 39 227380.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.476797326407766 24.51021841363229 27.50202212913915 20.5109621308208 2 37.24661211951109 22.29990987758273 29.330050556189136 11.123427446717045 3 25.211538985347115 23.712261977932442 40.2699172318562 10.806281804864241 4 21.344683310299416 24.812797620104995 41.99763857950017 11.844880490095417 5 19.514760062386976 29.656196597138585 38.60685664614339 12.222186694331052 6 16.44893990694061 39.916888419920724 35.324671633465854 8.309500039672812 7 77.47401430826604 3.6983350445934247 17.37645471911057 1.4511959280299667 8 77.86943973699887 3.137941774523423 16.749979571462575 2.242638917015136 9 75.31439223028705 3.926897811126625 18.1331988010521 2.6255111575342225 10 43.43722872974762 24.13871509828791 23.189646698807564 9.234409473156902 11 37.33472128961508 19.33475208045409 31.754710702303512 11.575815927627318 12 33.99249414085862 18.720356415804225 36.2150005862102 11.072148857126955 13 15.914955702641025 38.09004425590977 34.599665800970385 11.395334240478821 14 10.728475723199832 39.17589503639832 38.23298480472095 11.862644435680899 15 9.685258412116433 21.106409586846155 57.28576385558149 11.922568145455923 16 10.908838984044424 18.420737866929098 52.90102995356505 17.76939319546143 17 10.816940172215531 20.112576044490392 38.35046369819293 30.72002008510114 18 14.76681268629938 23.48760727942805 45.35147150603915 16.394108528233424 19 19.537971617952007 24.45432119818997 36.89630711256539 19.111400071292636 20 22.404835582840978 21.08154006302648 39.157657385597226 17.355966968535316 21 15.92549564368841 26.061129289548763 39.97243035645133 18.040944710311496 22 18.062261445014073 21.872746199403842 34.22816248562601 25.836829869956073 23 12.494330340700634 26.793832831797936 35.266524318249374 25.445312509252055 24 13.319406399994316 21.14785879321228 51.339105431385576 14.193629375407832 25 12.062074331453907 25.328662599907393 44.97061251268642 17.638650555952285 26 12.97419372411645 30.06299095104612 38.11763758471922 18.845177740118213 27 12.264820163736207 34.477213002734466 35.02244770590485 18.235519127624475 28 11.234511319778258 28.80423776685887 41.342741118915406 18.618509794447462 29 11.076885909283082 23.207647497000856 41.33456970394608 24.380896889769982 30 13.514454522522906 30.907252071572124 38.60981730374097 16.968476102164004 31 18.756713291102514 31.036455169130527 33.633188734816265 16.573642804950694 32 20.23266031664825 24.70526653616088 37.093131629652525 17.968941517538344 33 22.014857764087697 28.831002111541 31.838911804378693 17.31522831999261 34 15.488739434893365 26.806622872619485 33.293897374133564 24.41074031835359 35 16.155716378476257 26.619035607236796 35.87866988312508 21.34657813116187 36 24.474453669853517 26.851624868102704 31.593177223779527 17.080744238264252 37 15.445632260272593 32.15605744623149 36.659336078455055 15.738974215040852 38 16.532904156407987 28.459143517284915 34.036075020694994 20.971877305612104 39 16.268576646096015 31.680457409756198 34.35795771470393 17.69300822944386 40 18.366024914525816 25.6238993755381 34.00469205016064 22.00538365977544 41 12.798804368035793 26.80934667760926 36.194394409331046 24.197454545023906 42 16.871366532963368 27.7031099931668 32.12206909701128 23.303454376858554 43 17.941821893944507 25.35897973370661 34.5042142000244 22.19498417232448 44 14.726192464060578 27.970161308468544 35.60072334786424 21.702922879606636 45 14.706533697612645 35.65283092158165 30.288474633677836 19.35216074712787 46 20.00705820771263 29.441608134465962 33.169431328731285 17.381902329090117 47 17.629176451640028 28.94102014786708 32.277562834036196 21.152240566456697 48 17.25471247869807 27.17031005190625 34.44831698458208 21.126660484813602 49 19.15178344092363 24.97219942515872 36.254318119106074 19.62169901481158 50 18.184240538034384 30.426322851421173 32.87443140570838 18.515005204836058 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2002.0 1 2557.5 2 3113.0 3 11796.0 4 20479.0 5 15316.0 6 10153.0 7 11322.0 8 12491.0 9 13343.0 10 14195.0 11 14088.5 12 13982.0 13 13301.0 14 12620.0 15 11761.0 16 10902.0 17 10069.5 18 9237.0 19 8104.5 20 6972.0 21 6825.0 22 6678.0 23 7837.5 24 8997.0 25 9889.0 26 10781.0 27 13133.0 28 15485.0 29 19016.5 30 22548.0 31 24434.5 32 26321.0 33 31488.0 34 36655.0 35 39593.0 36 42531.0 37 46748.0 38 50965.0 39 53660.5 40 56356.0 41 69003.5 42 81651.0 43 77279.5 44 72908.0 45 69210.0 46 65512.0 47 62361.0 48 59210.0 49 53458.5 50 47707.0 51 40358.5 52 33010.0 53 27522.5 54 22035.0 55 18901.0 56 15767.0 57 13902.0 58 12037.0 59 11534.5 60 11032.0 61 10655.0 62 10278.0 63 8829.5 64 7381.0 65 5789.0 66 4197.0 67 3620.5 68 3044.0 69 2579.5 70 2115.0 71 1704.0 72 1293.0 73 1045.0 74 797.0 75 641.5 76 486.0 77 384.5 78 283.0 79 213.5 80 144.0 81 85.5 82 27.0 83 20.0 84 13.0 85 11.0 86 9.0 87 6.5 88 4.0 89 2.0 90 0.0 91 0.0 92 0.0 93 1.0 94 2.0 95 1.5 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 844407.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.393660708194744 #Duplication Level Percentage of deduplicated Percentage of total 1 79.58743278256574 20.210162647167298 2 8.552002582937012 4.343333039334151 3 3.2038426466430896 2.440718793938978 4 1.629461840708915 1.6551200447965062 5 1.0101108146832263 1.2825205652872012 6 0.6640553152689719 1.0117677220448138 7 0.46880050246085436 0.8333192629525504 8 0.35041829353330844 0.7118722601543541 9 0.2755762691916555 0.6298101251174735 >10 3.095037609985072 18.224536993536006 >50 0.648390534579056 11.387504946505143 >100 0.4455342473870729 23.439082736812047 >500 0.06418316707889483 11.130893494657174 >1k 0.004684902706488674 1.336830266231979 >5k 0.0 0.0 >10k+ 4.684902706488675E-4 1.3625271014643459 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11453 1.3563364586034934 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1481 0.17538935608065778 No Hit AAGCTTGGGCAAGAGTTACAAAAATACACTCTGACATGGGAAGCAGTTTA 1328 0.15727013158346625 No Hit GAGTGAGGGATTTATTAGTTGATTTTATTGTTTAGAAAGGCACATGCATG 1123 0.13299273928330768 No Hit GCAATAGGGATATCTTATCATTTGGTTTTTAATATTCGATAAATCCATAA 1112 0.13169004994037237 No Hit TGGTAAGGGAACAGAATTTAACTGGATCGCAGACAGTTATTACTGTAATT 1057 0.12517660322569568 No Hit TTTAATGGGTATCAACAATAATTTTAAATAATCTAAGTATAGGTAATATA 1039 0.12304492975543785 No Hit GGATTGGGGATAACATTTTAAATGTAAATAAAGAAAATATCCAACAAAAA 1031 0.12209751932421213 No Hit GTTGTAGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 1029 0.12186066671640572 No Hit TATTGAGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 1025 0.12138696150079287 No Hit CTGCAAGGGATGAATAATTATATTTTTGTTTTAAGTTCATTATTTTTGGT 1012 0.11984741955005111 No Hit TGGTTTGGGGTTTTCAAAACAATCACCATCATGCTATTAATGATATTAAA 998 0.11818945129540613 No Hit GGGTTTGGGAAGTGTATACTTTATCTTCACATGTGGGTGGAAGGCATTGA 982 0.11629463043295472 No Hit ACTGGAGGGGGTTTTCAAAACAATCACCATCATGCTATTAATGATATTAA 974 0.11534722000172903 No Hit TAAGCAGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 967 0.11451823587440653 No Hit TGGAATGGGACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTA 966 0.11439980957050333 No Hit TTGGTAGGGCATATTTTAAAATTTAGAAGAAAACTTAGAGAAAACTCCAT 958 0.11345239913927761 No Hit TCTTTAGGGCGATTGGAATGGGTTTTCAAAACAATCACCATCATGCTATT 947 0.11214970979634228 No Hit GACTGAGGGACTGCTAAACTGTAAAATTCAGGAATTAAAATGTGACCCTA 932 0.11037331523779409 No Hit AAATTGGGGAGTATGGGATTTCTAAAAATAATGTTAAGAATTTTTGCTGG 923 0.10930747850266519 No Hit GTTACTGGGGGTTTTCAAAACAATCACCATCATGCTATTAATGATATTAA 921 0.10907062589485875 No Hit TGTAGAGGGAGCTGTTAAGAGCAAGTATTTAATTCAGGTATTTTTCAAGT 899 0.10646524720898808 No Hit ATGACAGGGACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTA 893 0.10575468938556881 No Hit TTTTGAGGGGGGAATTCATCGACAATAAACAAAGAAATAGAACTTTTAAC 892 0.1056362630816656 No Hit ATGAGAGGGACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTA 887 0.10504413156214953 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGC 866 0.10255717918018206 No Hit GTTAAGGGGCAAAACAATCACCATCATGCTATTAATGATATTAAAATCCC 865 0.10243875287627886 No Hit TAAACCGGGAATAGGAGGTTTCCTCCTATGGTTTTCAAAACAATCACCAT 862 0.10208347396456921 No Hit TTGTAGGGGTATCCCAATAGGAGGTTTCCTCCTATGGTTTTCAAAACAAT 851 0.10078078462163388 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.08846444901569978 0.0 2 0.0 0.0 0.0 0.38855670310644036 0.0 3 0.0 0.0 0.0 0.5896445671340953 0.0 4 0.0 0.0 0.0 0.9603188983511506 0.0 5 0.0 0.0 0.0 1.6789297104358443 0.0 6 0.0 0.0 0.0 2.283969697077357 0.0 7 0.0 0.0 0.0 2.6285902414357056 0.0 8 0.0 0.0 0.0 3.5109846318185425 0.0 9 0.0 0.0 0.0 3.8174719063200566 0.0 10 0.0 0.0 0.0 4.417419561893731 0.0 11 0.0 0.0 0.0 5.0521845508149505 0.0 12 0.0 0.0 0.0 5.622999335628435 0.0 13 0.0 0.0 0.0 5.830126941155154 0.0 14 0.0 0.0 0.0 5.8927744559199535 0.0 15 0.0 0.0 0.0 6.006226855059231 0.0 16 0.0 0.0 0.0 6.275765122742943 0.0 17 0.0 0.0 0.0 6.6066482158485185 0.0 18 0.0 0.0 0.0 7.160528039203844 0.0 19 0.0 0.0 0.0 7.383287916845786 0.0 20 0.0 0.0 0.0 7.6602870416754 0.0 21 0.0 0.0 0.0 8.004789159729846 0.0 22 0.0 0.0 0.0 8.311986992054779 0.0 23 0.0 0.0 0.0 8.686806243908446 0.0 24 0.0 0.0 0.0 8.947462538799417 0.0 25 0.0 0.0 0.0 9.162998411903265 0.0 26 0.0 0.0 0.0 9.403048529915077 0.0 27 0.0 0.0 0.0 9.605083804373956 0.0 28 0.0 0.0 0.0 9.870121872509348 0.0 29 0.0 0.0 0.0 10.111593106167998 0.0 30 0.0 0.0 0.0 10.463792933976151 0.0 31 0.0 0.0 0.0 10.818124435254564 0.0 32 0.0 0.0 0.0 11.094886707476372 0.0 33 0.0 0.0 0.0 11.372359537521598 0.0 34 0.0 0.0 0.0 11.63123943785402 0.0 35 0.0 0.0 0.0 12.016243351843364 0.0 36 0.0 0.0 0.0 12.314440785071653 0.0 37 0.0 0.0 0.0 12.618914812406814 0.0 38 0.0 0.0 0.0 12.864057261486463 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACGTTG 95 0.0 44.000004 1 TTTACGG 95 0.0 44.000004 2 CCTAGGA 95 0.0 44.000004 39 CGGACAA 30 2.5269164E-6 44.0 38 TCACGAC 50 2.7284841E-11 44.0 25 GTCATAA 20 7.8552944E-4 44.0 20 ATCCTAA 230 0.0 44.0 25 AAGTAGT 25 4.4418328E-5 44.0 14 CGGGTAT 80 0.0 44.0 6 CGGGTAC 25 4.4418328E-5 44.0 6 AGCGTCA 20 7.8552944E-4 44.0 25 AGGTACG 40 8.307325E-9 44.0 1 ACTATCA 35 1.4454781E-7 44.0 34 CTCACGA 50 2.7284841E-11 44.0 24 AGTCCCT 40 8.307325E-9 44.0 17 GTTCTAA 80 0.0 44.0 21 GTCGATG 50 2.7284841E-11 44.0 1 CACGGTA 35 1.4454781E-7 44.0 28 CAAGTAC 20 7.8552944E-4 44.0 29 ACTGATC 35 1.4454781E-7 44.0 41 >>END_MODULE