##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546252_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1240917 Sequences flagged as poor quality 0 Sequence length 50 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.818592218496484 31.0 31.0 34.0 30.0 34.0 2 32.186577345624244 33.0 31.0 34.0 30.0 34.0 3 32.20397093439771 33.0 31.0 34.0 30.0 34.0 4 35.90996738702105 37.0 35.0 37.0 35.0 37.0 5 35.82140626649486 37.0 35.0 37.0 35.0 37.0 6 35.904768812096215 37.0 35.0 37.0 35.0 37.0 7 36.163315515864475 37.0 35.0 37.0 35.0 37.0 8 36.073711618101775 37.0 35.0 37.0 35.0 37.0 9 37.82202758121615 39.0 38.0 39.0 35.0 39.0 10 37.467473650534245 39.0 37.0 39.0 35.0 39.0 11 37.307402509595725 39.0 37.0 39.0 34.0 39.0 12 36.553076474897196 39.0 35.0 39.0 33.0 39.0 13 36.23140387310352 39.0 35.0 39.0 32.0 39.0 14 37.12476740990735 40.0 35.0 41.0 32.0 41.0 15 37.43392668486289 40.0 35.0 41.0 33.0 41.0 16 37.590474624813744 40.0 35.0 41.0 33.0 41.0 17 37.554814705576604 39.0 35.0 41.0 33.0 41.0 18 37.38622405849868 39.0 35.0 41.0 33.0 41.0 19 37.168643833552125 38.0 35.0 41.0 33.0 41.0 20 36.86986639718853 38.0 35.0 41.0 33.0 41.0 21 36.7711329605445 38.0 35.0 41.0 33.0 41.0 22 36.712889742021424 37.0 35.0 41.0 33.0 41.0 23 36.67164201957101 37.0 35.0 41.0 33.0 41.0 24 36.61202723469821 37.0 35.0 41.0 33.0 41.0 25 36.58278756758107 37.0 35.0 41.0 33.0 41.0 26 36.55411119357701 37.0 35.0 41.0 33.0 41.0 27 36.47215889539752 37.0 35.0 41.0 32.0 41.0 28 36.39216804991792 37.0 35.0 40.0 32.0 41.0 29 36.300506802630636 37.0 35.0 40.0 32.0 41.0 30 36.07807129727451 37.0 35.0 40.0 31.0 41.0 31 35.71598825707118 37.0 35.0 40.0 30.0 41.0 32 35.375984856360255 37.0 35.0 40.0 29.0 41.0 33 34.9466330141339 37.0 34.0 40.0 25.0 41.0 34 34.54357382484082 37.0 34.0 40.0 23.0 41.0 35 34.27244207307983 37.0 34.0 40.0 21.0 41.0 36 34.111689984100465 36.0 34.0 40.0 19.0 41.0 37 33.976381176178585 36.0 34.0 40.0 18.0 41.0 38 33.92664618181554 36.0 33.0 40.0 18.0 41.0 39 33.87249187496021 36.0 34.0 40.0 18.0 41.0 40 33.72143100626391 36.0 33.0 40.0 18.0 41.0 41 33.65628724564173 36.0 34.0 40.0 17.0 41.0 42 33.60736858307204 36.0 33.0 40.0 17.0 41.0 43 33.51655670766054 36.0 33.0 40.0 16.0 41.0 44 33.38252518097504 35.0 33.0 40.0 15.0 41.0 45 33.305867354545065 35.0 33.0 40.0 15.0 41.0 46 33.30550230192672 35.0 33.0 40.0 16.0 41.0 47 33.24037627012927 35.0 33.0 40.0 15.0 41.0 48 33.17329765004428 35.0 33.0 40.0 15.0 41.0 49 33.10830458443232 35.0 33.0 40.0 15.0 41.0 50 32.90480426974568 35.0 33.0 40.0 15.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 2.0 12 6.0 13 5.0 14 11.0 15 35.0 16 96.0 17 255.0 18 539.0 19 1109.0 20 1952.0 21 3144.0 22 5003.0 23 7534.0 24 11915.0 25 19581.0 26 29720.0 27 36804.0 28 35715.0 29 31264.0 30 30826.0 31 32762.0 32 39054.0 33 51935.0 34 100296.0 35 183518.0 36 65666.0 37 81410.0 38 140705.0 39 330052.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.6547222739313 22.173844020188298 25.906889824218705 19.264543881661705 2 38.44439233244448 22.37917604481202 29.299219851126225 9.87721177161728 3 26.946363052484575 23.234914180400462 39.13331834441788 10.685404422697086 4 24.027070303654476 25.54199837700668 38.52747605198414 11.903455267354706 5 20.252925860472537 29.959135058992665 38.01922288114354 11.768716199391257 6 15.794126440366277 40.01347390679634 36.111117826575025 8.081281826262353 7 78.98610463068843 3.4058684021574366 16.386430357550104 1.2215966096040267 8 78.78310958750666 3.0668449219407905 16.195281392712 1.9547640978405487 9 75.8590622902257 4.152493680076911 17.75509562686304 2.2333484028343555 10 43.96103849008435 24.203552695305167 23.322510691690095 8.512898122920388 11 38.21504580886554 19.859507122555335 29.522683628316805 12.402763440262323 12 35.0292565900862 20.365342726387016 33.99050863192301 10.614892051603773 13 20.13744674301343 34.48288644607174 33.065547494312675 12.314119316602158 14 13.450536981925461 35.96445209470093 38.33842231188709 12.246588611486505 15 11.532761659321292 22.237587203656652 54.71075019521854 11.51890094180352 16 15.438582918922055 20.133014536830423 48.52000576992659 15.908396774320927 17 15.516509162176037 20.534975344845787 35.68465900620267 28.263856486775506 18 17.19615413440222 22.752770733256135 44.415944015594924 15.635131116746729 19 21.50353327418353 23.613102246161507 36.08226819360199 18.801096286052974 20 22.43341013137865 23.44500075347505 38.10794759037067 16.01364152477563 21 19.140683865238366 25.00296151958592 40.18222008401851 15.674134531157199 22 19.419268170232176 21.864073100779503 34.49682774915647 24.21983097983185 23 14.540134432842807 26.283224421939583 36.05422441629859 23.122416728919017 24 14.135272544416749 25.273406682316384 46.21807904960606 14.37324172366081 25 15.127200288173986 24.898603210367817 42.505340808450526 17.468855693007672 26 14.592837393637126 28.115337286861248 36.40461046145713 20.887214858044494 27 13.987881542439986 31.862082637275496 37.57616343397665 16.573872386307865 28 13.046883877003863 29.817385046703365 39.882925288315015 17.252805787977763 29 14.284678185567609 24.63742538783819 39.18594071964523 21.891955706948973 30 17.11693852207682 29.600045772602034 36.95581573948943 16.32719996583172 31 21.02074514250349 29.75871875395373 33.31101113128436 15.909524972258419 32 23.162628926833946 24.749519911484814 35.03296352616654 17.054887635514703 33 22.70208241163591 29.895391875524307 31.484539256050166 15.917986456789615 34 17.704810233077637 28.091000445638187 33.45251938687277 20.751669934411407 35 17.977753548383976 27.73698804996628 33.7025764011614 20.582682000488347 36 27.11180522146123 27.767771736546443 30.21805648564731 14.902366556345026 37 16.954880946912645 33.37120854980631 34.225979658591186 15.447930844689855 38 18.068412311218236 30.34683222165544 32.14582441855499 19.43893104857134 39 17.864369655665932 30.372539017516885 33.589273094010316 18.17381823280687 40 20.035828343072097 26.532878508393388 32.61233426570834 20.81895888282617 41 14.873355752238062 26.514424413558686 35.78071700202351 22.83150283217975 42 17.84776902887139 27.04725618232323 32.641828583217084 22.463146205588284 43 17.906677078321916 25.9612044963523 32.898735370697636 23.233383054628153 44 16.439455660612275 28.578865468036945 33.44494434357818 21.53673452777261 45 17.003635214925737 35.19534344359857 28.750673896803736 19.050347444671964 46 20.44955464386417 31.176944146949392 32.08095303714914 16.292548172037293 47 17.662422224854684 30.253111207276557 32.8382961954748 19.246170372393966 48 18.376813275988642 29.348377046974132 33.797345027910815 18.477464649126414 49 21.51102773191116 26.050896232382986 34.17666129160935 18.261414744096502 50 18.704474191263394 30.407674324713096 31.0536482294948 19.834203254528706 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2738.0 1 4569.5 2 6401.0 3 20401.5 4 34402.0 5 24443.0 6 14484.0 7 15057.5 8 15631.0 9 16591.5 10 17552.0 11 17505.0 12 17458.0 13 16715.0 14 15972.0 15 14252.5 16 12533.0 17 11944.5 18 11356.0 19 10209.5 20 9063.0 21 9296.5 22 9530.0 23 11431.0 24 13332.0 25 13348.0 26 13364.0 27 16446.5 28 19529.0 29 22535.0 30 25541.0 31 30747.5 32 35954.0 33 51094.5 34 66235.0 35 66619.5 36 67004.0 37 70726.0 38 74448.0 39 77237.5 40 80027.0 41 89213.0 42 98399.0 43 99642.0 44 100885.0 45 96513.5 46 92142.0 47 86272.5 48 80403.0 49 76609.0 50 72815.0 51 63066.5 52 53318.0 53 45601.0 54 37884.0 55 34409.5 56 30935.0 57 29511.5 58 28088.0 59 25768.0 60 23448.0 61 20917.5 62 18387.0 63 16255.5 64 14124.0 65 11627.0 66 9130.0 67 8101.0 68 7072.0 69 5749.5 70 4427.0 71 3515.0 72 2603.0 73 2185.5 74 1768.0 75 1460.0 76 1152.0 77 907.5 78 663.0 79 529.0 80 395.0 81 310.0 82 225.0 83 144.0 84 63.0 85 41.0 86 19.0 87 16.0 88 13.0 89 7.5 90 2.0 91 2.5 92 3.0 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1240917.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.227332486460757 #Duplication Level Percentage of deduplicated Percentage of total 1 78.76952753053907 19.08375533283794 2 8.734206202966686 4.2321303536916375 3 3.3813061020165653 2.457600815161618 4 1.7652592812062884 1.710700941223819 5 1.1151446694232088 1.3508490338310224 6 0.7277847811154308 1.0579370322401762 7 0.5556688491590812 0.9423661772662248 8 0.39074793847395106 0.7573424179046018 9 0.3240922277165821 0.7066701141450648 >10 2.992337010053938 16.5344138200839 >50 0.7191443941725252 11.997722735166581 >100 0.44603035026281784 21.937328025816637 >500 0.06166009349989303 10.49322696194239 >1k 0.016755460190188323 5.027649388338862 >5k 0.0 0.0 >10k+ 3.3510920380376644E-4 1.7103068503495535 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 21066 1.6976155536591084 No Hit ATGTGAGGGGCTGGCAAGGATTTTAATGATACAGTAAAGATAAACATATA 2314 0.1864750019542 No Hit AGCGTTGGGAGTCTTATTAAAGACACGAAATTTACAAAGTTCTTAAAGAC 1763 0.1420723545571541 No Hit GGGTATTTTAATATAAATATTTTTCTTATAATTTTCTTTCTTCTATCCAT 1711 0.13788190507503725 No Hit TTTTTTGGGATGTAATTTAATGCAGTTAAAGTATGAAAGTAGAATGTGTG 1602 0.1290980782759846 No Hit AAAGACGGGATTTATATTTTTGATAGTAGACTATTCTTAATATAAAGTTG 1594 0.12845339374027434 No Hit GAGGAAGGGTCATATTCTTCCCTAGGAAGTGAAAAGAGAAAACAGTAACA 1572 0.12668051126707103 No Hit TTGCAAGGGAGTTGAGAGATTCAAGATACAGGCAAAGTCCACAGAACAAA 1566 0.12619699786528832 No Hit TAAGCAGAAGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGA 1460 0.11765492776712706 No Hit TTAGCAGGGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAAAGGAA 1459 0.11757434220016326 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1416 0.11410916282072049 No Hit TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1399 0.11273920818233613 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGC 1392 0.11217510921358961 No Hit AGATGAGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 1354 0.10911285766896577 No Hit TTTTTTGGGAGTGAAATTGACCTTTCAGTGAAGAGGCTGAAATATAATAA 1339 0.10790407416450898 No Hit GGACTTGGGGATTATATTTTCTTTAATTTGTAAAATGCACCCATATTCTA 1307 0.10532533602166784 No Hit TATGAGGGGATGGTTTACAGGTAATATTCGCATTTTAGACCAATTAAGCT 1297 0.10451948035202999 No Hit GAGAGTGTTCCATAGCATTTTAAATATTCCCCAAAATGAATCATGTTTCA 1260 0.10153781437436991 No Hit CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1250 0.10073195870473207 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.09726677932528928 0.0 2 0.0 0.0 0.0 0.3575581606183169 0.0 3 0.0 0.0 0.0 0.49350601208622336 0.0 4 0.0 0.0 0.0 0.7369550098838198 0.0 5 0.0 0.0 0.0 1.2635011044251951 0.0 6 0.0 0.0 0.0 1.730897392815152 0.0 7 0.0 0.0 0.0 2.0052912483268424 0.0 8 0.0 0.0 0.0 2.6619024479477678 0.0 9 0.0 0.0 0.0 2.909219552959626 0.0 10 0.0 0.0 0.0 3.3628357093987753 0.0 11 0.0 0.0 0.0 3.9643263812164715 0.0 12 0.0 0.0 0.0 4.41367150260654 0.0 13 0.0 0.0 0.0 4.5888645251858105 0.0 14 0.0 0.0 0.0 4.660666265350543 0.0 15 0.0 0.0 0.0 4.770101465287364 0.0 16 0.0 0.0 0.0 5.044172978531199 0.0 17 0.0 0.0 0.0 5.3429842608329166 0.0 18 0.0 0.0 0.0 5.80393370386577 0.0 19 0.0 0.0 0.0 6.007895773851112 0.0 20 0.0 0.0 0.0 6.248040763403193 0.0 21 0.0 0.0 0.0 6.570785959093154 0.0 22 0.0 0.0 0.0 6.879912193966236 0.0 23 0.0 0.0 0.0 7.240371434995249 0.0 24 0.0 0.0 0.0 7.501871599792734 0.0 25 0.0 0.0 0.0 7.716873892452114 0.0 26 0.0 0.0 0.0 7.971443698490713 0.0 27 0.0 0.0 0.0 8.28193988800218 0.0 28 0.0 0.0 0.0 8.541505999192532 0.0 29 0.0 0.0 0.0 8.895760151565334 0.0 30 0.0 0.0 0.0 9.27862218021028 0.0 31 0.0 0.0 0.0 9.612407598574281 0.0 32 0.0 0.0 0.0 9.88148280666636 0.0 33 0.0 0.0 0.0 10.171026748767241 0.0 34 0.0 0.0 0.0 10.494255457858987 0.0 35 0.0 0.0 0.0 10.896538608142205 0.0 36 0.0 0.0 0.0 11.180360974988657 0.0 37 0.0 0.0 0.0 11.491340677901906 0.0 38 0.0 0.0 0.0 11.872429824073649 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGTATCG 90 0.0 44.000004 37 GTATCGA 90 0.0 44.000004 38 CGTAAGG 90 0.0 44.000004 2 TGATGCG 95 0.0 44.000004 1 AACGTGT 110 0.0 44.0 35 AATCCGG 20 7.856726E-4 44.0 2 TACCCGA 20 7.856726E-4 44.0 40 ACACGAA 200 0.0 44.0 23 ATTAGGC 20 7.856726E-4 44.0 27 ATAATCG 20 7.856726E-4 44.0 1 CATTGCA 20 7.856726E-4 44.0 25 TAGCGCG 20 7.856726E-4 44.0 1 GCAAACC 20 7.856726E-4 44.0 44 GTTAGCG 155 0.0 44.0 1 ATTCGAT 30 2.5278805E-6 44.0 14 CGACATA 50 2.7284841E-11 44.0 40 GGATAGT 175 0.0 44.0 8 ATCACGT 20 7.856726E-4 44.0 17 TTATCGG 20 7.856726E-4 44.0 2 TCGATAG 25 4.4430468E-5 44.0 1 >>END_MODULE