##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546251_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1576149 Sequences flagged as poor quality 0 Sequence length 50 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.90555334552761 31.0 31.0 34.0 30.0 34.0 2 32.26134648437426 33.0 31.0 34.0 30.0 34.0 3 32.13625996019412 33.0 31.0 34.0 30.0 34.0 4 35.900304476289996 37.0 35.0 37.0 35.0 37.0 5 35.896835261133305 37.0 35.0 37.0 35.0 37.0 6 35.957207091461534 37.0 35.0 37.0 35.0 37.0 7 36.19891456962508 37.0 35.0 37.0 35.0 37.0 8 36.10932151719159 37.0 35.0 37.0 35.0 37.0 9 37.88814065167697 39.0 38.0 39.0 35.0 39.0 10 37.51296990322616 39.0 37.0 39.0 35.0 39.0 11 37.317301219618194 39.0 37.0 39.0 34.0 39.0 12 36.66351721823254 39.0 35.0 39.0 33.0 39.0 13 36.42462927045603 39.0 35.0 39.0 33.0 39.0 14 37.46554735624614 40.0 35.0 41.0 33.0 41.0 15 37.71613470553863 40.0 35.0 41.0 33.0 41.0 16 37.83452833456735 40.0 35.0 41.0 33.0 41.0 17 37.75340529353507 40.0 35.0 41.0 33.0 41.0 18 37.55917302234751 39.0 36.0 41.0 33.0 41.0 19 37.33988537885695 38.0 35.0 41.0 33.0 41.0 20 37.04513659558836 38.0 35.0 41.0 33.0 41.0 21 36.92723467134135 38.0 35.0 41.0 33.0 41.0 22 36.831380789506575 38.0 35.0 41.0 33.0 41.0 23 36.8020041252445 38.0 35.0 41.0 33.0 41.0 24 36.71040682067495 38.0 35.0 41.0 33.0 41.0 25 36.69332467932917 38.0 35.0 41.0 33.0 41.0 26 36.63178417776492 38.0 35.0 41.0 33.0 41.0 27 36.55944457027857 38.0 35.0 41.0 32.0 41.0 28 36.466243990891726 37.0 35.0 41.0 32.0 41.0 29 36.35409723319305 37.0 35.0 41.0 32.0 41.0 30 36.101761318251 37.0 35.0 41.0 31.0 41.0 31 35.7458742796525 37.0 35.0 41.0 30.0 41.0 32 35.35394813561408 37.0 35.0 41.0 28.0 41.0 33 34.927884356111 37.0 35.0 41.0 23.0 41.0 34 34.447264820775196 37.0 34.0 41.0 21.0 41.0 35 34.18662004670878 37.0 34.0 41.0 18.0 41.0 36 34.002995275192895 37.0 34.0 40.0 18.0 41.0 37 33.9409192912599 37.0 34.0 40.0 18.0 41.0 38 33.87606565115354 37.0 34.0 40.0 18.0 41.0 39 33.82268173884576 37.0 34.0 40.0 17.0 41.0 40 33.68990114513285 37.0 33.0 40.0 16.0 41.0 41 33.58858775407655 36.0 34.0 40.0 15.0 41.0 42 33.51620690683431 36.0 33.0 40.0 15.0 41.0 43 33.403871715174134 36.0 33.0 40.0 15.0 41.0 44 33.271381068668 36.0 33.0 40.0 14.0 41.0 45 33.22998269833626 36.0 33.0 40.0 14.0 41.0 46 33.180468344046155 35.0 33.0 40.0 13.0 41.0 47 33.14007114809577 35.0 33.0 40.0 13.0 41.0 48 33.06683314838889 35.0 33.0 40.0 12.0 41.0 49 32.99066776047189 36.0 33.0 40.0 12.0 41.0 50 32.8193038856098 35.0 33.0 40.0 10.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 2.0 10 0.0 11 1.0 12 0.0 13 7.0 14 20.0 15 39.0 16 125.0 17 305.0 18 612.0 19 1344.0 20 2531.0 21 4149.0 22 6561.0 23 10235.0 24 16077.0 25 26466.0 26 40357.0 27 48518.0 28 46405.0 29 40138.0 30 38307.0 31 40231.0 32 46565.0 33 60695.0 34 115091.0 35 223398.0 36 81157.0 37 105694.0 38 179611.0 39 441507.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.231309984018004 22.887937625186453 27.6904658125596 20.19028657823594 2 38.767464243545504 23.23282887595018 27.225471703500116 10.774235177004204 3 24.841369692839955 24.180772249324146 40.54242333687995 10.435434720955952 4 23.04134951708246 24.95734857554711 39.6022203484569 12.39908155891353 5 19.506785208758817 29.56262383822849 39.300726010040925 11.629864942971762 6 17.881938826849492 38.20615944304758 35.82104229993484 8.090859430168088 7 78.0471897009737 3.4142076669147396 17.111199512228854 1.4274031198827015 8 78.69376562748826 2.5323747945149853 16.71631298817561 2.05754658982114 9 75.54825083161553 3.718557065353593 18.398577799433937 2.3346143035969313 10 42.08948519461041 24.408161918701847 24.397376136393195 9.104976750294547 11 36.53258670341446 20.523440360016725 32.09480829540862 10.849164641160195 12 33.59840979501303 20.4174224645005 34.26991991239407 11.714247828092395 13 18.119543266531274 33.66915183780213 35.24152856106878 12.969776334597807 14 12.2962993980899 35.51593155215655 38.43272431730757 13.755044732445981 15 11.588307958194308 23.925974003726804 52.81753184502227 11.66818619305662 16 14.603568571245484 18.57584530396555 50.03372143115911 16.786864693629855 17 14.669361843328263 21.046741139321217 36.3468174645925 27.93707955275802 18 15.856178571949734 24.888192677215162 43.13069386206507 16.124934888770035 19 20.177660868356988 24.494575068727638 35.784053411193995 19.54371065172138 20 20.62476326793977 22.671777858565402 40.41933852700475 16.284120346490084 21 17.5382530458732 26.387860538565832 40.51660090511747 15.557285510443492 22 19.034938955644424 21.217283391354496 36.704207533678606 23.043570119322474 23 15.217469921942659 25.51916094227132 36.613924191177354 22.649444944608664 24 13.653277704074931 23.337197181230962 48.368523534259765 14.641001580434338 25 14.37751126321179 24.92619669840859 43.53351110840409 17.16278092997553 26 12.869278221792483 28.901011262260102 38.05756943030133 20.17214108564609 27 13.881936289018359 32.882170403940236 36.568370122367874 16.66752318467353 28 12.460750855407705 28.243268878767175 41.767497869808 17.52848239601713 29 14.103933067241739 25.13569465830959 39.242736568687356 21.51763570576132 30 15.030368321776685 31.701507915812527 36.42790116924225 16.840222593168537 31 20.46519713555 30.553520003502204 34.10197893727053 14.879303923677266 32 20.907287318648173 25.745979599644446 36.490839381302145 16.85589370040523 33 21.59992488019851 28.46932618680087 32.92296603937825 17.007782893622366 34 16.51163690742436 26.859072333897366 35.06324592408459 21.566044834593683 35 17.016157736356146 26.404039212028813 35.428820498569614 21.15098255304543 36 23.77249866605251 28.175128112887805 32.38139287592734 15.670980345132346 37 17.20554338454042 30.18267942941943 36.19575306649308 16.416024119547075 38 16.46367189904 30.532456005111193 33.46745770863034 19.536414387218468 39 16.32948407796471 30.29884864946144 34.77063399462868 18.60103327794517 40 19.023709052887767 27.504886911072497 31.598535417654038 21.8728686183857 41 14.497994796177267 27.9210912166299 34.946822920929435 22.634091066263405 42 17.050418456630688 27.05251851189196 32.98723661278217 22.909826418695186 43 18.371423006327447 25.091028830396112 33.08367419577717 23.453873967499266 44 15.731380726060799 28.1847718711873 33.536994281632005 22.546853121119895 45 16.31381297072802 34.70014573495273 29.139821171729324 19.846220122589934 46 19.577717588882777 31.329905992390312 31.800166101047555 17.292210317679356 47 16.756030045382765 30.170370948431906 33.070414028115366 20.003184978069967 48 17.288911137208473 29.326542097225577 34.401379565003054 18.983167200562892 49 19.454950007899 27.54384261894021 33.69249988421145 19.30870748894933 50 17.05200460108784 30.16250367192442 33.01445485166694 19.771036875320796 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2543.0 1 5212.5 2 7882.0 3 25184.0 4 42486.0 5 31230.5 6 19975.0 7 21124.0 8 22273.0 9 23314.5 10 24356.0 11 24251.0 12 24146.0 13 23585.0 14 23024.0 15 20206.0 16 17388.0 17 17150.0 18 16912.0 19 15649.0 20 14386.0 21 13198.0 22 12010.0 23 15325.5 24 18641.0 25 18328.0 26 18015.0 27 21345.0 28 24675.0 29 30506.0 30 36337.0 31 55563.5 32 74790.0 33 78417.0 34 82044.0 35 86082.5 36 90121.0 37 84749.0 38 79377.0 39 87904.0 40 96431.0 41 112967.0 42 129503.0 43 127102.0 44 124701.0 45 119405.5 46 114110.0 47 107365.5 48 100621.0 49 93064.5 50 85508.0 51 73902.0 52 62296.0 53 51681.0 54 41066.0 55 37796.5 56 34527.0 57 32660.0 58 30793.0 59 29026.0 60 27259.0 61 26318.5 62 25378.0 63 20915.5 64 16453.0 65 14399.0 66 12345.0 67 10005.0 68 7665.0 69 6783.0 70 5901.0 71 4748.0 72 3595.0 73 3116.0 74 2637.0 75 2228.0 76 1819.0 77 1415.5 78 1012.0 79 813.5 80 615.0 81 430.5 82 246.0 83 202.0 84 158.0 85 108.5 86 59.0 87 57.5 88 56.0 89 31.5 90 7.0 91 6.0 92 5.0 93 3.0 94 1.0 95 0.5 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1576149.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.770787479201225 #Duplication Level Percentage of deduplicated Percentage of total 1 79.5499293940506 18.90964465611439 2 8.453024176010038 4.0187008248896925 3 3.299446686004695 2.352913379159171 4 1.7188793282526138 1.6343646085714019 5 1.0998837744507755 1.3072551727145536 6 0.6804486088897954 0.9704879563462465 7 0.4909102899883976 0.8168526922267071 8 0.38105915605707835 0.7246460972509267 9 0.3264774835719947 0.6984564190860864 >10 2.7040928970623743 14.338211290803379 >50 0.7406390586882313 12.267376579458976 >100 0.46262956471090927 21.965050753122036 >500 0.06842838688970321 11.17771697346902 >1k 0.023882848757582686 7.267251069173315 >5k 0.0 0.0 >10k+ 2.68346615253738E-4 1.5510715276140925 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 24316 1.5427475448069947 No Hit TTTAGCGGGATCTTAGAAATCACTATGATTAATTTTTTTAATCTTATACA 2097 0.1330457970661403 No Hit ATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCC 2088 0.1324747850615646 No Hit TGATTTGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 1832 0.1162326658203 No Hit GGTACTGGGGTTTTCAAAACAATCACCATCATGCTATTAATGATATTAAA 1805 0.11451962980657286 No Hit TAATTGGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 1692 0.10735025686023339 No Hit GGGCATGGGAGATCTTTCCATCTTCTGAGATCTTCTTTGATTTCTTCCTT 1645 0.10436830528078246 No Hit AGATGAGGGAAGGATAGCTAAGGTTTTTTTGTTGTTGTTCTTGAGAATTA 1611 0.10221114881905202 No Hit TTAGGCGGGAAATGGTGTACATATACAGATGTTTTATGCTATATAAAGTT 1607 0.10195736570590724 No Hit ACGTTTGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 1600 0.10151324525790391 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.05595917644841954 0.0 2 0.0 0.0 0.0 0.24077672859609084 0.0 3 0.0 0.0 0.0 0.3844814164143111 0.0 4 0.0 0.0 0.0 0.6621201421946783 0.0 5 0.0 0.0 0.0 1.2050891127678918 0.0 6 0.0 0.0 0.0 1.6760471249862798 0.0 7 0.0 0.0 0.0 1.962695151283286 0.0 8 0.0 0.0 0.0 2.615615655626467 0.0 9 0.0 0.0 0.0 2.870604238558664 0.0 10 0.0 0.0 0.0 3.3276676253323765 0.0 11 0.0 0.0 0.0 3.8974741601206486 0.0 12 0.0 0.0 0.0 4.3382954276530965 0.0 13 0.0 0.0 0.0 4.506046065441782 0.0 14 0.0 0.0 0.0 4.5687304943885385 0.0 15 0.0 0.0 0.0 4.668023137406426 0.0 16 0.0 0.0 0.0 4.898140975250437 0.0 17 0.0 0.0 0.0 5.1535102328523505 0.0 18 0.0 0.0 0.0 5.587733139443035 0.0 19 0.0 0.0 0.0 5.7698859689026865 0.0 20 0.0 0.0 0.0 5.9780515674596755 0.0 21 0.0 0.0 0.0 6.249282269633137 0.0 22 0.0 0.0 0.0 6.523685260720909 0.0 23 0.0 0.0 0.0 6.836790176563256 0.0 24 0.0 0.0 0.0 7.077122784711344 0.0 25 0.0 0.0 0.0 7.2842098050374675 0.0 26 0.0 0.0 0.0 7.520164654483808 0.0 27 0.0 0.0 0.0 7.753898901690132 0.0 28 0.0 0.0 0.0 7.994865967621082 0.0 29 0.0 0.0 0.0 8.28982539087358 0.0 30 0.0 0.0 0.0 8.649689845312848 0.0 31 0.0 0.0 0.0 8.978973434618174 0.0 32 0.0 0.0 0.0 9.252044064361936 0.0 33 0.0 0.0 0.0 9.528540766133151 0.0 34 0.0 0.0 0.0 9.81296819019014 0.0 35 0.0 0.0 0.0 10.18748861941352 0.0 36 0.0 0.0 0.0 10.468680308777914 0.0 37 0.0 0.0 0.0 10.756089684414354 0.0 38 6.344577828618994E-5 0.0 0.0 11.109990235694722 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTACGA 30 2.528317E-6 44.000004 8 CGTATTC 40 8.3164196E-9 44.000004 30 ACGCATG 55 1.8189894E-12 44.000004 1 CGCATTG 20 7.857372E-4 44.000004 1 CGCATGG 120 0.0 44.000004 2 TATGCGT 30 2.528317E-6 44.000004 20 CTACGCG 20 7.857372E-4 44.000004 42 TTGCGAT 60 0.0 44.000004 11 AGCGAAT 20 7.857372E-4 44.000004 23 GTATCAC 30 2.528317E-6 44.000004 34 TCCAACG 20 7.857372E-4 44.000004 44 TGCTATC 30 2.528317E-6 44.000004 20 TTACGGC 20 7.857372E-4 44.000004 16 CGGTAAG 20 7.857372E-4 44.000004 35 ATCGCTT 55 1.8189894E-12 44.000004 11 TAATGCG 55 1.8189894E-12 44.000004 1 TGCGTTA 30 2.528317E-6 44.000004 22 TGCGTAA 30 2.528317E-6 44.000004 17 TGCCGGA 20 7.857372E-4 44.000004 18 TCGCAAG 25 4.4435943E-5 44.0 1 >>END_MODULE