##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546249_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1450503 Sequences flagged as poor quality 0 Sequence length 50 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.919787135910784 31.0 31.0 34.0 30.0 34.0 2 32.259101842602185 33.0 31.0 34.0 30.0 34.0 3 32.085616506825566 33.0 31.0 34.0 30.0 34.0 4 35.87887718949909 37.0 35.0 37.0 35.0 37.0 5 35.87680549436988 37.0 35.0 37.0 35.0 37.0 6 35.95708040590058 37.0 35.0 37.0 35.0 37.0 7 36.18949840158896 37.0 35.0 37.0 35.0 37.0 8 36.09799772906364 37.0 35.0 37.0 35.0 37.0 9 37.89980992800429 39.0 38.0 39.0 35.0 39.0 10 37.6023579406592 39.0 37.0 39.0 35.0 39.0 11 37.37378068159804 39.0 37.0 39.0 35.0 39.0 12 36.31068050186728 38.0 35.0 39.0 33.0 39.0 13 35.917668560492466 38.0 35.0 39.0 32.0 39.0 14 36.92948997692525 39.0 35.0 41.0 33.0 41.0 15 37.24849035127814 39.0 35.0 41.0 33.0 41.0 16 37.44772192818629 39.0 35.0 41.0 33.0 41.0 17 37.37704644526761 39.0 35.0 41.0 33.0 41.0 18 37.16968872177445 38.0 35.0 40.0 33.0 41.0 19 36.80973289955278 37.0 35.0 40.0 33.0 41.0 20 36.3956551623816 35.0 35.0 40.0 33.0 41.0 21 36.267350705238115 35.0 35.0 40.0 33.0 41.0 22 36.164964843230244 35.0 35.0 40.0 32.0 41.0 23 36.14443541309463 35.0 35.0 40.0 32.0 41.0 24 36.12348130269293 35.0 35.0 40.0 33.0 41.0 25 36.081723374581095 35.0 35.0 40.0 33.0 41.0 26 36.00120854627671 35.0 35.0 40.0 33.0 41.0 27 35.869499752844355 35.0 35.0 40.0 32.0 41.0 28 35.799344779018035 35.0 35.0 40.0 32.0 41.0 29 35.70357386368729 35.0 35.0 40.0 31.0 41.0 30 35.43067818542947 35.0 35.0 40.0 31.0 41.0 31 34.91768648530889 35.0 35.0 40.0 29.0 41.0 32 34.3558269096996 35.0 34.0 40.0 24.0 41.0 33 33.73624253103923 35.0 34.0 40.0 21.0 41.0 34 33.12655609812596 35.0 33.0 40.0 15.0 41.0 35 32.76610458578852 35.0 33.0 40.0 12.0 41.0 36 32.54710951993894 35.0 33.0 40.0 10.0 41.0 37 32.44308422664414 35.0 33.0 40.0 10.0 41.0 38 32.41627352718333 35.0 32.0 40.0 10.0 41.0 39 32.40476924211808 35.0 33.0 40.0 10.0 41.0 40 32.19495719760663 35.0 32.0 40.0 10.0 41.0 41 32.08517803823915 35.0 32.0 40.0 10.0 41.0 42 31.947671945525105 35.0 32.0 40.0 10.0 41.0 43 31.7420680963776 35.0 31.0 40.0 10.0 41.0 44 31.571483823197884 35.0 31.0 40.0 9.0 41.0 45 31.526022352246084 35.0 31.0 39.0 8.0 41.0 46 31.471486787686754 35.0 31.0 39.0 8.0 41.0 47 31.455419947425135 35.0 31.0 39.0 8.0 41.0 48 31.386293582295245 35.0 31.0 39.0 8.0 41.0 49 31.34863767948084 35.0 30.0 39.0 8.0 41.0 50 31.06532630404763 35.0 30.0 39.0 8.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 1.0 12 7.0 13 9.0 14 18.0 15 34.0 16 95.0 17 276.0 18 754.0 19 1564.0 20 2804.0 21 4534.0 22 7519.0 23 11759.0 24 18807.0 25 32503.0 26 49808.0 27 57119.0 28 51476.0 29 42140.0 30 39025.0 31 40389.0 32 47084.0 33 61132.0 34 122240.0 35 287393.0 36 62680.0 37 76187.0 38 129040.0 39 304103.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.105700574214598 22.571687200922714 27.47309036934084 22.849521855521843 2 37.9386323227184 23.501364699004416 29.303145184808304 9.256857793468887 3 22.132873906500024 22.678133033851015 44.62720863038546 10.561784429263504 4 21.520948250365564 25.108876024386024 43.03017642845275 10.339999296795662 5 16.8533260531002 29.935960146238926 43.12297182425683 10.087741976404049 6 14.585354184031333 37.66707135386828 39.83114822926943 7.916426232830956 7 73.92456272065621 4.600335194067162 20.32956843246791 1.1455336528087154 8 75.37364624547484 3.082172184407754 19.456078339720772 2.088103230396628 9 73.10863886527639 3.3911684429470332 21.205057831662533 2.295134860114043 10 49.4444341032042 16.229266675077543 25.57760997391939 8.748689247798866 11 43.82734816818717 15.565427992910047 31.719065730991247 8.888158107911531 12 39.28974983161014 17.503927947753297 34.418405201505955 8.787917019130605 13 15.973148624994227 40.95813659123766 33.04150353360179 10.027211250166323 14 9.924764030132996 43.39577374193642 37.33339400194278 9.346068225987812 15 6.974132421649594 19.87958659857994 63.78215005415363 9.364130925616838 16 9.075127731552433 15.737644113800522 60.31321548455949 14.87401267008755 17 9.145654990027598 17.785002857629387 38.92739277340343 34.14194937893958 18 13.058090882955774 22.00264322100678 48.142196189873445 16.797069706164 19 19.41919458284471 20.88330737682032 40.332698381182254 19.36479965915272 20 20.81533095760574 21.327498116170734 41.12614727442825 16.731023651795272 21 15.802380277738138 24.208636590203536 43.638999712513524 16.349983419544806 22 17.240019496684944 21.82222304952144 36.03887754799542 24.898879905798196 23 11.115799140022462 25.943689878614524 37.21839941041142 25.722111570951594 24 11.345995147890077 20.672621842216113 54.71867345327793 13.262709556615878 25 9.582744744409354 22.228013316759775 51.26959406495539 16.919647873875476 26 9.871472172067207 29.941682299174836 41.116495450199 19.070350078558956 27 10.959646412313521 35.803441978403356 37.39985370592132 15.837057903361798 28 10.073746831271635 31.111690220564864 44.382672769377244 14.431890178786254 29 10.691187815537093 23.933973249279735 41.56330597041165 23.81153296477153 30 13.165984489518465 31.03592340036525 39.55620912193908 16.241882988177206 31 19.80568120162454 30.62558298741885 35.401995032068186 14.166740778888427 32 22.921221121224843 25.210013353988238 37.792682952051806 14.076082572735112 33 23.046556953001822 27.738722360450137 34.034814129994906 15.17990655655314 34 17.660011733860596 29.667570491064133 31.679769018057875 20.992648757017392 35 15.910067059495914 25.895361815866636 34.02061216005758 24.17395896457987 36 29.292114528546303 23.555759622696403 33.236539324634286 13.915586524123011 37 16.856290541970612 31.754777480639472 37.04342562545545 14.345506351934468 38 15.472287889097784 31.51947979425068 32.60386224640693 20.4043700702446 39 17.01692447378599 30.188355349833817 35.766144571917465 17.028575604462727 40 19.95459506116154 24.359618697789664 31.858258824697366 23.827527416351433 41 13.619068695480118 25.768164560845445 34.495137204128504 26.117629539545938 42 18.142120354111643 25.03090307293401 33.97786836704233 22.84910820591202 43 18.517852083036026 22.77065266324854 34.77731517963079 23.934180074084647 44 14.653951077660645 28.312936960488877 33.635435431708856 23.397676530141613 45 14.594040825837656 36.70030327410561 29.44895667227162 19.25669922778512 46 21.526946169708026 31.26281021135427 31.410000530850336 15.800243088087374 47 17.684348119238635 29.40228320796303 32.54450352739705 20.368865145401287 48 18.83822370584549 28.748372116431337 33.49458773956345 18.918816438159727 49 22.773065619305854 23.41174061687566 34.13698558362168 19.6782081801968 50 20.02636326846618 29.553816848362256 30.0221371482858 20.397682734885763 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 5066.0 1 6345.5 2 7625.0 3 22811.0 4 37997.0 5 29020.0 6 20043.0 7 22784.5 8 25526.0 9 28541.5 10 31557.0 11 31887.0 12 32217.0 13 30077.5 14 27938.0 15 25472.5 16 23007.0 17 20315.0 18 17623.0 19 16558.0 20 15493.0 21 13385.5 22 11278.0 23 10702.0 24 10126.0 25 14893.5 26 19661.0 27 19139.0 28 18617.0 29 22884.5 30 27152.0 31 29945.5 32 32739.0 33 43888.0 34 55037.0 35 57098.0 36 59159.0 37 61118.0 38 63077.0 39 80951.0 40 98825.0 41 126468.5 42 154112.0 43 154104.5 44 154097.0 45 142841.0 46 131585.0 47 117564.5 48 103544.0 49 92142.0 50 80740.0 51 66623.5 52 52507.0 53 42583.5 54 32660.0 55 28672.0 56 24684.0 57 21161.5 58 17639.0 59 17117.0 60 16595.0 61 15197.0 62 13799.0 63 11902.5 64 10006.0 65 8612.5 66 7219.0 67 5790.0 68 4361.0 69 3921.0 70 3481.0 71 2659.0 72 1837.0 73 1373.5 74 910.0 75 787.0 76 664.0 77 416.5 78 169.0 79 111.5 80 54.0 81 45.5 82 37.0 83 22.0 84 7.0 85 10.5 86 14.0 87 9.5 88 5.0 89 3.5 90 2.0 91 2.0 92 2.0 93 3.5 94 5.0 95 3.5 96 2.0 97 2.5 98 3.0 99 1.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1450503.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.8513915792353 #Duplication Level Percentage of deduplicated Percentage of total 1 81.12929260294577 19.350465264192174 2 8.222557901202176 3.922388965690166 3 3.1913116430600983 2.283516709499976 4 1.6300991727546046 1.5552053472943042 5 1.0186954773288897 1.214865236488368 6 0.6780837485325296 0.970394460585905 7 0.45458762133688513 0.7589783154505431 8 0.3328314936523036 0.6350795428002289 9 0.2700187284678457 0.5796290183772418 >10 1.8969230661580776 9.718787222236843 >50 0.5263311289096274 9.093724153568902 >100 0.5434780963598371 24.1699758571253 >500 0.07149497952108298 11.943853836033314 >1k 0.03400370977222239 12.254542933624181 >5k 0.0 0.0 >10k+ 2.9062999805318284E-4 1.5485931370325607 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 22340 1.5401553805817707 No Hit ATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCC 4301 0.29651782864289145 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3741 0.25791053172589096 No Hit ATTGTTGGGGGTTTTCAAAACAATCACCATCATGCTATTAATGATATTAA 3276 0.22585268696445304 No Hit TAAGTTGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 2796 0.19276071817845258 No Hit GTTTAAGGGTTGGGAATGCTTCTGCAAATGTATCTTCAATATATACTCCA 2479 0.1709062304593648 No Hit ATTTTGGGGCAAAACAATCACCATCATGCTATTAATGATATTAAAATCCC 2437 0.16801068319058976 No Hit ATTGATGGGGTTTCCCTCCATTAAGATTTTAACAATTATAGTTTATCTTA 2396 0.1651840775234522 No Hit GAAGATGGGAAGCTATACTATATAGGTGGCTATCTATCCCTACCAAGGCT 2244 0.15470495407455206 No Hit GGTGAAGGGCAATCACCATCATGCTATTAATGATATTAAAATCCCAACTA 2136 0.14725926109770196 No Hit GAAGCGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAATT 2133 0.14705243629278947 No Hit ATTTCTGGGGGTTTTCAAAACAATCACCATCATGCTATTAATGATATTAA 2124 0.14643196187805196 No Hit GGTTAAGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 2097 0.14457053863383942 No Hit AACTTTGGGGGGAATTCATCGACAATAAACAAAGAAATAGAACTTTTAAC 2084 0.14367429781255192 No Hit ATTAACGGGAAGTATAGGTAATATAACAATTAAAAAGATTTAGAGGGATA 2067 0.1425022905847144 No Hit AATGAAGGGTATAGGTAATATAACAATTAAAAAAGATTTAGAGGGATAGA 1969 0.13574601362423933 No Hit GTAAGCGGGGGGAATTCATCGACAATAAACAAAGAAATAGAACTTTTAAC 1920 0.13236787514400175 No Hit AGGTACGGGATGCCACAACTAGATACATCAACATGATTTATCACAATTAT 1916 0.13209210873745175 No Hit GATCAGAGGGGGAATTCATCGACAATAAACAAAGAAATAGAACTTTTAAC 1910 0.13167845912762677 No Hit TGCGAAGGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAA 1887 0.13009280228996425 No Hit ATAGACGGGGGGAATTCATCGACAATAAACAAAGAAATAGAACTTTTAAC 1855 0.1278866710375642 No Hit TAGGTTGGGGGGAATTCATCGACAATAAACAAAGAAATAGAACTTTTAAC 1844 0.1271283134195517 No Hit GACATAGGGGGGAATTCATCGACAATAAACAAAGAAATAGAACTTTTAAC 1843 0.1270593718179142 No Hit GACAGTGGGCTCTGTGGAGAAATTAAATATCTTACATTATGCTTTACAAA 1835 0.1265078390048142 No Hit TTATTAGGGGTAAAAGATTTTGTTAAGCTCAGGATTTTTAATAACACAGT 1805 0.12443959095568917 No Hit GTAAGAGGGGGGAATTCATCGACAATAAACAAAGAAATAGAACTTTTAAC 1798 0.12395699974422666 No Hit ATGTATGGGGATGGCATTCACATTAAAGCTACATGTAGATACAAGCTTCT 1797 0.12388805814258916 No Hit GTAGAGGGCTCCCAATAGGAGGTTTCCTCCTATGGTTTTCAAAACAATCA 1793 0.12361229173603915 No Hit ATTTAAGGGGTTACCCAAAAAATGAATTTAAGTTCAATTTTAAACTTGCT 1758 0.12119933567872662 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGC 1730 0.11926897083287659 No Hit AGATAAGGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAA 1730 0.11926897083287659 No Hit GAACAAGGGAAGCATTTTTTCAACTAATCTTATGTTATTAACCATTTCCT 1729 0.1192000292312391 No Hit TTGTTAGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGG 1723 0.11878637962141408 No Hit GGTTATGGGGGGAATTCATCGACAATAAACAAAGAAATAGAACTTTTAAC 1723 0.11878637962141408 No Hit TGAATAGGGATGGTTTTCAAAACAATCACCATCATGCTATTAATGATATT 1717 0.11837273001158907 No Hit GTTTTTGGGTATTGAATATACTTTTCAAGGTTTTAATAGCGTTTAAATTG 1700 0.11720072278375157 No Hit CTTTTTGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 1683 0.11602871555591406 No Hit CTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTCTGC 1676 0.11554612434445154 No Hit TAATGAGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGG 1673 0.11533929953953904 No Hit TGTCAAGGGATTAAAATCCCAACTATACCAAAGAATATCCCAATTATCCA 1671 0.11520141633626405 No Hit GTGATGGGTGTTTTTTTAAATTAAAGTTTCTGAAATCTAAAGAGACAAAG 1646 0.11347787629532652 No Hit GCCAGCGGGGCTATTAATGATATTAAAATCCCAACTATACCAAAGAATAT 1610 0.11099597863637649 No Hit GGGGAAGGGGGGAATTCATCGACAATAAACAAAGAAATAGAACTTTTAAC 1559 0.10747995695286393 No Hit GATATAAGGGACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACT 1526 0.10520488409882642 No Hit ACTAAAGGTCTAGGAGCTATAGAACTAGTACCGCAAGGGAAAGATGAAAG 1512 0.1042397016759014 No Hit TGTCGAGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 1495 0.10306769444806388 No Hit TACTATGGGACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTA 1469 0.10127521280548886 No Hit AATAGAGGGATGCCACAACTAGATACATCAACATGATTTATCACAATTAT 1461 0.10072367999238885 No Hit TAGACAGGGATGATAAAAGTTTTCACCAATACTGAGAAATCTTGATTTTT 1453 0.10017214717928882 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.13602178003078932 0.0 2 0.0 0.0 0.0 0.4492924178715935 0.0 3 0.0 0.0 0.0 0.633780143853546 0.0 4 0.0 0.0 0.0 0.9984122749142883 0.0 5 0.0 0.0 0.0 1.5879319105165588 0.0 6 0.0 0.0 0.0 2.145600526162304 0.0 7 0.0 0.0 0.0 2.4674888642077955 0.0 8 0.0 0.0 0.0 3.2459084882968186 0.0 9 0.0 0.0 0.0 3.5511819003476726 0.0 10 0.0 0.0 0.0 4.063555883717579 0.0 11 0.0 0.0 0.0 4.6994042756202505 0.0 12 0.0 0.0 0.0 5.237217709994395 0.0 13 0.0 0.0 0.0 5.421567552773072 0.0 14 0.0 0.0 0.0 5.4869931327270605 0.0 15 0.0 0.0 0.0 5.586337980686699 0.0 16 0.0 0.0 0.0 5.831218549703103 0.0 17 0.0 0.0 0.0 6.151452289309295 0.0 18 0.0 0.0 0.0 6.70415710963714 0.0 19 0.0 0.0 0.0 6.904087754385892 0.0 20 0.0 0.0 0.0 7.1429014624581955 0.0 21 0.0 0.0 0.0 7.431766773319325 0.0 22 0.0 0.0 0.0 7.677819349563565 0.0 23 6.894160163750092E-5 0.0 0.0 7.998122030771395 0.0 24 6.894160163750092E-5 0.0 0.0 8.21039322221326 0.0 25 6.894160163750092E-5 0.0 0.0 8.391020218503511 0.0 26 6.894160163750092E-5 0.0 0.0 8.610323453312402 0.0 27 6.894160163750092E-5 0.0 0.0 8.773783990794918 0.0 28 6.894160163750092E-5 0.0 0.0 8.985779415830233 0.0 29 6.894160163750092E-5 0.0 0.0 9.180746265261085 0.0 30 6.894160163750092E-5 0.0 0.0 9.526074747863328 0.0 31 6.894160163750092E-5 0.0 0.0 9.875401843360544 0.0 32 6.894160163750092E-5 0.0 0.0 10.110699529749335 0.0 33 6.894160163750092E-5 0.0 0.0 10.319385757906051 0.0 34 6.894160163750092E-5 0.0 0.0 10.527796219656215 0.0 35 6.894160163750092E-5 0.0 0.0 10.891601051497307 0.0 36 6.894160163750092E-5 0.0 0.0 11.165368151599825 0.0 37 6.894160163750092E-5 0.0 0.0 11.439066310100703 0.0 38 6.894160163750092E-5 0.0 0.0 11.674226113286219 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTCGCA 20 7.857164E-4 44.000004 30 CGGGTAC 20 7.857164E-4 44.000004 6 CAGCGCA 20 7.857164E-4 44.000004 28 CTCACTA 20 7.857164E-4 44.000004 38 TCGTTCG 20 7.857164E-4 44.000004 27 TCGTTAC 30 2.528177E-6 44.000004 15 GGTACGC 20 7.857164E-4 44.000004 18 GCCTTAC 20 7.857164E-4 44.000004 23 ACCGGGT 30 2.528177E-6 44.000004 37 GTCGATT 30 2.528177E-6 44.000004 17 GGTCGTT 20 7.857164E-4 44.000004 25 GGTGTAA 30 2.528177E-6 44.000004 11 AGTCACG 20 7.857164E-4 44.000004 15 GATCGAC 20 7.857164E-4 44.000004 13 CGACGTG 20 7.857164E-4 44.000004 2 ACTGATC 20 7.857164E-4 44.000004 13 CGTGCTA 20 7.857164E-4 44.000004 43 CGAAACA 30 2.528177E-6 44.000004 43 CGAAAAG 20 7.857164E-4 44.000004 22 CGACGGC 20 7.857164E-4 44.000004 28 >>END_MODULE