##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546248_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1495012 Sequences flagged as poor quality 0 Sequence length 50 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.86143990817465 31.0 31.0 34.0 30.0 34.0 2 32.23783421136419 33.0 31.0 34.0 30.0 34.0 3 32.19885927337038 33.0 31.0 34.0 30.0 34.0 4 35.92517183808558 37.0 35.0 37.0 35.0 37.0 5 35.850282138203575 37.0 35.0 37.0 35.0 37.0 6 35.95027732218872 37.0 35.0 37.0 35.0 37.0 7 36.17482869702718 37.0 35.0 37.0 35.0 37.0 8 36.08400267021268 37.0 35.0 37.0 35.0 37.0 9 37.88019494157906 39.0 38.0 39.0 35.0 39.0 10 37.60245870936153 39.0 37.0 39.0 35.0 39.0 11 37.37679028663315 39.0 37.0 39.0 35.0 39.0 12 36.300806950044546 38.0 35.0 39.0 33.0 39.0 13 35.8534941525553 38.0 35.0 39.0 32.0 39.0 14 36.856841951770285 39.0 35.0 41.0 32.0 41.0 15 37.2154578023454 39.0 35.0 41.0 33.0 41.0 16 37.413422768512895 39.0 35.0 41.0 33.0 41.0 17 37.348756397941955 39.0 35.0 41.0 33.0 41.0 18 37.15180346378491 38.0 35.0 40.0 33.0 41.0 19 36.79790998333124 37.0 35.0 40.0 33.0 41.0 20 36.388907246229465 35.0 35.0 40.0 33.0 41.0 21 36.26503733749294 35.0 35.0 40.0 33.0 41.0 22 36.17008291572242 35.0 35.0 40.0 32.0 41.0 23 36.133138061768065 35.0 35.0 40.0 32.0 41.0 24 36.120635820983374 35.0 35.0 40.0 33.0 41.0 25 36.066640267770424 35.0 35.0 40.0 33.0 41.0 26 36.008215318673024 35.0 35.0 40.0 33.0 41.0 27 35.865689372393 35.0 35.0 40.0 32.0 41.0 28 35.79110736234893 35.0 35.0 40.0 32.0 41.0 29 35.69517635978842 35.0 35.0 40.0 31.0 41.0 30 35.426059456378944 35.0 35.0 40.0 31.0 41.0 31 34.92589156474998 35.0 35.0 40.0 29.0 41.0 32 34.373884624337464 35.0 34.0 40.0 24.0 41.0 33 33.74616658595382 35.0 34.0 40.0 21.0 41.0 34 33.22420823378006 35.0 34.0 40.0 16.0 41.0 35 32.8263920289603 35.0 33.0 40.0 15.0 41.0 36 32.57797730051665 35.0 33.0 40.0 12.0 41.0 37 32.40711847128986 35.0 32.0 40.0 10.0 41.0 38 32.3861895422913 35.0 32.0 40.0 10.0 41.0 39 32.37403111145596 35.0 32.0 40.0 10.0 41.0 40 32.17008492239527 35.0 32.0 40.0 10.0 41.0 41 32.09686477432957 35.0 32.0 40.0 10.0 41.0 42 31.947268650686414 35.0 32.0 40.0 10.0 41.0 43 31.764701554235018 35.0 31.0 40.0 10.0 41.0 44 31.59766610569012 35.0 31.0 40.0 9.0 41.0 45 31.544685260051423 35.0 31.0 40.0 9.0 41.0 46 31.511703584987945 35.0 31.0 39.0 8.0 41.0 47 31.467627015702885 35.0 31.0 39.0 8.0 41.0 48 31.404601434637314 35.0 31.0 39.0 8.0 41.0 49 31.359045278566327 35.0 30.0 39.0 8.0 41.0 50 31.062164718410287 35.0 30.0 39.0 8.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 3.0 13 5.0 14 8.0 15 33.0 16 127.0 17 326.0 18 762.0 19 1559.0 20 2879.0 21 4618.0 22 7726.0 23 12188.0 24 19367.0 25 32396.0 26 49905.0 27 58312.0 28 54084.0 29 44234.0 30 41565.0 31 41657.0 32 49559.0 33 63566.0 34 129274.0 35 291247.0 36 65156.0 37 79247.0 38 133897.0 39 311310.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.282189039285303 22.5545346793203 27.47569919171217 22.68757708968222 2 38.03133352775764 23.447704767587148 29.261771811865056 9.259189892790157 3 22.124103351678784 22.702493357912847 44.63542767549692 10.537975614911451 4 21.58497724432981 25.079932468769485 42.94299978863046 10.392090498270248 5 16.949897392127955 29.86865657265627 43.078115760943724 10.103330274272047 6 14.524498800009633 37.77976364069319 39.79359363001769 7.902143929279497 7 73.96870393013569 4.59066549298601 20.286325460932755 1.1543051159455575 8 75.38220428999901 3.0586376564201494 19.42967681864761 2.1294812349332313 9 73.08128630405642 3.384053104590465 21.195682710239115 2.3389778811139976 10 49.47779683373779 16.184151030225845 25.53404253611342 8.804009599922944 11 43.72346175147758 15.689439282092717 31.707638467115984 8.87946049931372 12 39.216273849306894 17.517585143129285 34.37430602563725 8.891834981926566 13 16.024888094543723 40.85585935096173 33.083413377283925 10.035839177210617 14 9.97068919848135 43.2863415143156 37.32692446615813 9.416044821044915 15 6.987167995975952 19.790409709085946 63.80323368641857 9.41918860851953 16 9.139993525135583 15.741813443637911 60.15316265019946 14.965030381027042 17 9.184274106161022 17.797783562941298 38.91366758260134 34.10427474829633 18 13.15300479193478 21.951395707860538 48.08764076810086 16.807958732103824 19 19.48860611152285 20.85601988479022 40.311181448710784 19.344192554976146 20 20.842909622130122 21.36885857772379 41.048366166960534 16.739865633185552 21 15.781946900760662 24.23104296152807 43.67891361407133 16.308096523639946 22 17.253707662547193 21.774139605568383 36.04091472175474 24.931238010129682 23 11.185662723777467 25.904006121689992 37.25622269252688 25.654108462005652 24 11.37729998153861 20.750402003462177 54.51401058988156 13.358287425117657 25 9.610424531709445 22.255406645565387 51.23671248123761 16.897456341487562 26 9.823198743555235 29.922970517962398 41.1411413420093 19.11268939647307 27 10.985396772734934 35.76319119846529 37.38150596784507 15.869906060954694 28 10.117778318836237 31.116071309126614 44.33355718883862 14.43259318319853 29 10.683526286076633 23.884089224701878 41.546087924377865 23.886296564843626 30 13.19527870010408 30.99058736652281 39.53613750257523 16.27799643079788 31 19.751413366581673 30.6550047758814 35.384665808702536 14.208916048834391 32 22.973996195348263 25.20922908979995 37.76344270146327 14.053332013388523 33 22.972992858920197 27.632019007205294 34.105144306533994 15.289843827340516 34 17.72353666726421 29.69247069588739 31.54382707295995 21.04016556388845 35 15.896327253560507 25.909424138401565 33.95009538384976 24.244153224188167 36 29.376285942855308 23.602352355700155 33.05358084082268 13.967780860621854 37 16.882071849590506 31.73138409591361 37.01080660222125 14.375737452274631 38 15.544223056403562 31.480416210706004 32.43719782851242 20.538162904378023 39 17.09885940714857 30.12597892190832 35.724796857817864 17.050364813125245 40 20.037096692200464 24.385623660545868 31.719812282443215 23.85746736481045 41 13.741628829735145 25.76641525285416 34.433369096702904 26.058586820707795 42 18.28995352545665 24.91632174189906 33.952637169467536 22.84108756317675 43 18.57724218936035 22.747041495319102 34.74754717687885 23.9281691384417 44 14.698410447541557 28.153887727991485 33.55023237271674 23.597469451750218 45 14.62289265905558 36.449205758883544 29.480164707708035 19.44773687435285 46 21.54210133430367 31.211522047983557 31.30817679055419 15.938199827158577 47 17.6038720759432 29.363443236576025 32.52134431027978 20.511340377200984 48 18.8272736272351 28.71294678571142 33.496520429267456 18.963259157786023 49 22.74470037698694 23.355732261680842 34.05691726889148 19.84265009244073 50 20.03749802677169 29.554210936099512 29.985846267454708 20.42244476967409 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 5254.0 1 6493.0 2 7732.0 3 23240.0 4 38748.0 5 29595.5 6 20443.0 7 23268.0 8 26093.0 9 29169.0 10 32245.0 11 32424.5 12 32604.0 13 30797.0 14 28990.0 15 26401.0 16 23812.0 17 20891.5 18 17971.0 19 16935.0 20 15899.0 21 13899.0 22 11899.0 23 11052.5 24 10206.0 25 15274.0 26 20342.0 27 19729.5 28 19117.0 29 23569.5 30 28022.0 31 30657.0 32 33292.0 33 44876.5 34 56461.0 35 58317.5 36 60174.0 37 62357.5 38 64541.0 39 82855.0 40 101169.0 41 129602.5 42 158036.0 43 158427.5 44 158819.0 45 147692.5 46 136566.0 47 122417.5 48 108269.0 49 96641.0 50 85013.0 51 70025.5 52 55038.0 53 44587.5 54 34137.0 55 29882.0 56 25627.0 57 22032.0 58 18437.0 59 17765.5 60 17094.0 61 15623.5 62 14153.0 63 12106.5 64 10060.0 65 8672.0 66 7284.0 67 5807.5 68 4331.0 69 3898.5 70 3466.0 71 2620.5 72 1775.0 73 1332.0 74 889.0 75 795.5 76 702.0 77 435.0 78 168.0 79 116.5 80 65.0 81 53.0 82 41.0 83 24.5 84 8.0 85 10.0 86 12.0 87 8.0 88 4.0 89 3.0 90 2.0 91 1.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1495012.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.761715425516556 #Duplication Level Percentage of deduplicated Percentage of total 1 80.84613660180649 19.21042891184564 2 8.238943008691397 3.915428383591483 3 3.2603047857846277 2.324113035607921 4 1.7074132285260564 1.6228426899999446 5 1.0337937853216672 1.2282356867740505 6 0.684362046263542 0.9756969714803088 7 0.5073091573248599 0.843817508037835 8 0.3411416498912843 0.6484888643606319 9 0.2790794676801266 0.5968266202907831 >10 1.9376529358023704 9.78485184678328 >50 0.5194453870629443 8.988373533644477 >100 0.5406989624766063 24.227919123835086 >500 0.06914598891198023 11.690139320201157 >1k 0.03428960925553118 12.405933595593357 >5k 0.0 0.0 >10k+ 2.8338520045893535E-4 1.5369039079540523 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 22824 1.5266767089494935 No Hit ATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCC 4464 0.2985929209932763 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3784 0.25310833625415713 No Hit ATTGTTGGGGGTTTTCAAAACAATCACCATCATGCTATTAATGATATTAA 3480 0.23277405131196272 No Hit TAAGTTGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 2763 0.18481457005027385 No Hit GTTTAAGGGTTGGGAATGCTTCTGCAAATGTATCTTCAATATATACTCCA 2526 0.16896185448678674 No Hit ATTGATGGGGTTTCCCTCCATTAAGATTTTAACAATTATAGTTTATCTTA 2488 0.16642006886901242 No Hit ATTTTGGGGCAAAACAATCACCATCATGCTATTAATGATATTAAAATCCC 2419 0.16180472129989593 No Hit GAAGATGGGAAGCTATACTATATAGGTGGCTATCTATCCCTACCAAGGCT 2281 0.15257402616166293 No Hit GAAGCGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAATT 2220 0.1484937913541831 No Hit GGTGAAGGGCAATCACCATCATGCTATTAATGATATTAAAATCCCAACTA 2192 0.14662089668845468 No Hit AACTTTGGGGGGAATTCATCGACAATAAACAAAGAAATAGAACTTTTAAC 2094 0.14006576535840515 No Hit ATTTCTGGGGGTTTTCAAAACAATCACCATCATGCTATTAATGATATTAA 2088 0.13966443078717763 No Hit GGTTAAGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 2078 0.13899553983513177 No Hit AATGAAGGGTATAGGTAATATAACAATTAAAAAAGATTTAGAGGGATAGA 2078 0.13899553983513177 No Hit ATTAACGGGAAGTATAGGTAATATAACAATTAAAAAGATTTAGAGGGATA 2054 0.13739020155022166 No Hit GACAGTGGGCTCTGTGGAGAAATTAAATATCTTACATTATGCTTTACAAA 1959 0.1310357375057859 No Hit TGCGAAGGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAA 1950 0.13043373564894462 No Hit GACATAGGGGGGAATTCATCGACAATAAACAAAGAAATAGAACTTTTAAC 1907 0.1275575045551474 No Hit GTAGAGGGCTCCCAATAGGAGGTTTCCTCCTATGGTTTTCAAAACAATCA 1887 0.12621972265105563 No Hit GTAAGCGGGGGGAATTCATCGACAATAAACAAAGAAATAGAACTTTTAAC 1881 0.12581838807982812 No Hit TTGTTAGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGG 1865 0.12474816255655471 No Hit GAACAAGGGAAGCATTTTTTCAACTAATCTTATGTTATTAACCATTTCCT 1864 0.12468127346135015 No Hit GTAAGAGGGGGGAATTCATCGACAATAAACAAAGAAATAGAACTTTTAAC 1863 0.12461438436614555 No Hit TAGGTTGGGGGGAATTCATCGACAATAAACAAAGAAATAGAACTTTTAAC 1860 0.1244137170805318 No Hit ATAGACGGGGGGAATTCATCGACAATAAACAAAGAAATAGAACTTTTAAC 1857 0.12421304979491803 No Hit ATGTATGGGGATGGCATTCACATTAAAGCTACATGTAGATACAAGCTTCT 1854 0.12401238250930428 No Hit AGGTACGGGATGCCACAACTAGATACATCAACATGATTTATCACAATTAT 1814 0.1213368187011208 No Hit GATCAGAGGGGGAATTCATCGACAATAAACAAAGAAATAGAACTTTTAAC 1813 0.1212699296059162 No Hit CTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTCTGC 1787 0.11953081313059695 No Hit TGAATAGGGATGGTTTTCAAAACAATCACCATCATGCTATTAATGATATT 1783 0.11926325674977861 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGC 1775 0.1187281439881419 No Hit AGATAAGGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAA 1766 0.11812614213130063 No Hit GGTTATGGGGGGAATTCATCGACAATAAACAAAGAAATAGAACTTTTAAC 1762 0.11785858575048228 No Hit ATTTAAGGGGTTACCCAAAAAATGAATTTAAGTTCAATTTTAAACTTGCT 1760 0.11772480756007311 No Hit TTATTAGGGGTAAAAGATTTTGTTAAGCTCAGGATTTTTAATAACACAGT 1754 0.11732347298884557 No Hit GTTTTTGGGTATTGAATATACTTTTCAAGGTTTTAATAGCGTTTAAATTG 1712 0.11451413099025291 No Hit TAATGAGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGG 1705 0.11404590732382082 No Hit GTGATGGGTGTTTTTTTAAATTAAAGTTTCTGAAATCTAAAGAGACAAAG 1674 0.11197234537247862 No Hit GATATAAGGGACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACT 1671 0.11177167808686485 No Hit CTTTTTGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 1613 0.10789211056499881 No Hit ACTAAAGGTCTAGGAGCTATAGAACTAGTACCGCAAGGGAAAGATGAAAG 1609 0.10762455418418047 No Hit GCCAGCGGGGCTATTAATGATATTAAAATCCCAACTATACCAAAGAATAT 1600 0.10702255232733918 No Hit TAGACAGGGATGATAAAAGTTTTCACCAATACTGAGAAATCTTGATTTTT 1583 0.1058854377088612 No Hit TGTCAAGGGATTAAAATCCCAACTATACCAAAGAATATCCCAATTATCCA 1565 0.10468143399517864 No Hit GGGGAAGGGGGGAATTCATCGACAATAAACAAAGAAATAGAACTTTTAAC 1550 0.10367809756710983 No Hit GGTTTAGGGGATTCTTATTGGATTTCTGATATTTCCTATTGTTATGGGCT 1501 0.10040053190208506 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.13939687440635928 0.0 2 0.0 0.0 0.0 0.4543107346295548 0.0 3 0.0 0.0 0.0 0.6343092898250984 0.0 4 0.0 0.0 0.0 1.0014635334030764 0.0 5 0.0 0.0 0.0 1.6149703146195482 0.0 6 0.0 0.0 0.0 2.185266740333857 0.0 7 0.0 0.0 0.0 2.514963090597266 0.0 8 0.0 0.0 0.0 3.313685776435239 0.0 9 0.0 0.0 0.0 3.626124740135865 0.0 10 0.0 0.0 0.0 4.18003333752505 0.0 11 0.0 0.0 0.0 4.843506272859348 0.0 12 0.0 0.0 0.0 5.403301110626537 0.0 13 0.0 0.0 0.0 5.601292832432114 0.0 14 2.0066728561376096E-4 0.0 0.0 5.667847482160679 0.0 15 2.0066728561376096E-4 0.0 0.0 5.77052224329972 0.0 16 2.0066728561376096E-4 0.0 0.0 6.041958191639933 0.0 17 2.0066728561376096E-4 0.0 0.0 6.388109259323671 0.0 18 2.0066728561376096E-4 0.0 0.0 6.967368823795394 0.0 19 2.0066728561376096E-4 0.0 0.0 7.181547706640482 0.0 20 2.0066728561376096E-4 0.0 0.0 7.442281399747962 0.0 21 2.0066728561376096E-4 0.0 0.0 7.755456143495838 0.0 22 2.0066728561376096E-4 0.0 0.0 8.02134029693407 0.0 23 2.0066728561376096E-4 0.0 0.0 8.365217135380853 0.0 24 2.0066728561376096E-4 0.0 0.0 8.591703611743585 0.0 25 2.0066728561376096E-4 0.0 0.0 8.778524854649996 0.0 26 2.0066728561376096E-4 0.0 0.0 9.00695111477366 0.0 27 2.0066728561376096E-4 0.0 0.0 9.187417893635637 0.0 28 2.0066728561376096E-4 0.0 0.0 9.40300144748002 0.0 29 2.0066728561376096E-4 0.0 0.0 9.606344296901964 0.0 30 2.0066728561376096E-4 0.0 0.0 9.961391614247912 0.0 31 2.0066728561376096E-4 0.0 0.0 10.318311826259588 0.0 32 2.0066728561376096E-4 0.0 0.0 10.575232840940407 0.0 33 2.0066728561376096E-4 0.0 0.0 10.791351507546429 0.0 34 2.0066728561376096E-4 0.0 0.0 11.017235982052318 0.0 35 2.0066728561376096E-4 0.0 0.0 11.40251717043074 0.0 36 2.0066728561376096E-4 0.0 0.0 11.685324264955733 0.0 37 2.0066728561376096E-4 0.0 0.0 11.975221603572413 0.0 38 2.0066728561376096E-4 0.0 0.0 12.22103902844927 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTGCTAG 105 0.0 44.000004 1 GACGTAG 130 0.0 44.000004 1 GTCTATA 65 0.0 44.000004 40 GTATCAT 130 0.0 44.000004 13 CCAGTGA 105 0.0 44.000004 16 CGGACAG 25 4.443485E-5 44.0 31 TCACGAC 45 4.802132E-10 44.0 25 AACGTAG 25 4.443485E-5 44.0 1 ACTATCG 30 2.5282297E-6 44.0 25 TCGTTAC 25 4.443485E-5 44.0 15 ACACGTG 45 4.802132E-10 44.0 42 TCGCAAG 40 8.314601E-9 44.0 1 AGATCGA 25 4.443485E-5 44.0 12 ACGCCAT 20 7.8572426E-4 44.0 33 TTCAGTA 110 0.0 44.0 39 GTACACG 30 2.5282297E-6 44.0 1 GATCGAC 25 4.443485E-5 44.0 13 CGAGTAA 20 7.8572426E-4 44.0 21 TAGACAC 20 7.8572426E-4 44.0 44 TGGACGC 20 7.8572426E-4 44.0 33 >>END_MODULE