##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546243_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1820571 Sequences flagged as poor quality 0 Sequence length 50 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.87569449365062 31.0 31.0 34.0 30.0 34.0 2 32.23559971020081 33.0 31.0 34.0 30.0 34.0 3 32.15169581411546 33.0 31.0 34.0 30.0 34.0 4 35.90148530323728 37.0 35.0 37.0 35.0 37.0 5 35.906493072777714 37.0 35.0 37.0 35.0 37.0 6 35.964184862880934 37.0 35.0 37.0 35.0 37.0 7 36.19466420150601 37.0 35.0 37.0 35.0 37.0 8 36.080966356159685 37.0 35.0 37.0 35.0 37.0 9 37.80079216905026 39.0 38.0 39.0 35.0 39.0 10 37.405897929825315 39.0 37.0 39.0 34.0 39.0 11 37.30909038977332 39.0 37.0 39.0 34.0 39.0 12 37.06314886922839 39.0 37.0 39.0 33.0 39.0 13 36.9825730498838 39.0 37.0 39.0 33.0 39.0 14 38.138430195801206 40.0 37.0 41.0 33.0 41.0 15 38.244339275974404 40.0 37.0 41.0 33.0 41.0 16 38.291633229354964 40.0 37.0 41.0 34.0 41.0 17 38.207962776513526 40.0 37.0 41.0 33.0 41.0 18 38.01591423789569 39.0 36.0 41.0 33.0 41.0 19 37.857605113999945 39.0 36.0 41.0 34.0 41.0 20 37.62365928052243 39.0 35.0 41.0 33.0 41.0 21 37.52985464450439 39.0 35.0 41.0 33.0 41.0 22 37.44627921679517 39.0 35.0 41.0 33.0 41.0 23 37.421441404921865 39.0 35.0 41.0 33.0 41.0 24 37.358341970733356 39.0 35.0 41.0 33.0 41.0 25 37.3500621508307 39.0 35.0 41.0 33.0 41.0 26 37.29816195028922 39.0 35.0 41.0 33.0 41.0 27 37.23820988030678 39.0 35.0 41.0 33.0 41.0 28 37.14341214926526 39.0 35.0 41.0 33.0 41.0 29 37.04362916909036 39.0 35.0 41.0 32.0 41.0 30 36.85720633801154 39.0 35.0 41.0 32.0 41.0 31 36.60827839177928 39.0 35.0 41.0 31.0 41.0 32 36.328329958018664 39.0 35.0 41.0 30.0 41.0 33 35.99246664919962 39.0 35.0 41.0 29.0 41.0 34 35.563653930552555 39.0 35.0 41.0 25.0 41.0 35 35.36496791391272 39.0 35.0 41.0 23.0 41.0 36 35.23387827225634 39.0 35.0 41.0 23.0 41.0 37 35.208995968847134 39.0 35.0 41.0 23.0 41.0 38 35.11885996206684 39.0 35.0 41.0 23.0 41.0 39 35.024440134441335 39.0 35.0 41.0 22.0 41.0 40 34.88473671172396 38.0 35.0 41.0 21.0 41.0 41 34.77646134097489 38.0 34.0 41.0 21.0 41.0 42 34.74152010550536 38.0 34.0 41.0 21.0 41.0 43 34.62648257057813 38.0 34.0 41.0 20.0 41.0 44 34.46948567235224 38.0 34.0 40.0 18.0 41.0 45 34.40336246155739 38.0 34.0 40.0 20.0 41.0 46 34.32275972757997 38.0 34.0 40.0 20.0 41.0 47 34.29010898229182 38.0 34.0 40.0 20.0 41.0 48 34.2064154597651 38.0 34.0 40.0 20.0 41.0 49 34.13334607658806 38.0 34.0 40.0 19.0 41.0 50 34.021940918535996 38.0 34.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 3.0 10 3.0 11 8.0 12 4.0 13 12.0 14 21.0 15 46.0 16 92.0 17 240.0 18 547.0 19 1047.0 20 2079.0 21 3487.0 22 5575.0 23 8399.0 24 13117.0 25 22359.0 26 35926.0 27 44382.0 28 44324.0 29 40716.0 30 40008.0 31 43402.0 32 50609.0 33 64464.0 34 107299.0 35 167419.0 36 114076.0 37 148904.0 38 257089.0 39 604913.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.81811036207871 22.675358445235037 26.153113501203745 18.353417691482505 2 38.01521610527686 22.919128119694314 28.11914503746352 10.946510737565303 3 28.896593431401467 23.47911726595667 36.23863062742404 11.38565867521783 4 24.980294643823285 25.76559771632087 36.23088580450858 13.023221835347263 5 21.48672037509111 29.51552013077216 35.795692670046925 13.202066824089806 6 18.963116516741177 38.737736677119436 33.5902307572734 8.708916048865987 7 79.23810716527947 3.8128147707504954 15.231979417446503 1.7170986465235356 8 78.96791720839231 3.4325494583842104 15.089112152176432 2.5104211810470454 9 74.13833352283432 5.328712804938671 17.09172561795173 3.4412280542752796 10 34.62858630616438 28.71236551609358 24.8387456462835 11.820302531458537 11 27.505930831590746 26.093352030763974 32.595707610414536 13.805009527230744 12 25.856283550600335 23.140047820161914 36.59253058518454 14.411138044053212 13 20.580850733094177 27.678129553859748 37.271383538461286 14.469636174584789 14 15.848763931755478 30.004817169997764 38.50517227836761 15.641246619879148 15 15.21352366922246 25.543579459411358 44.5700826828506 14.67281418851558 16 18.07652654029972 23.21469473038953 41.69049160950053 17.018287119810214 17 17.857089891028693 24.06717452930976 36.520794849527974 21.554940730133566 18 18.691168869546974 25.827061949245593 39.65464681135754 15.8271223698499 19 20.730419192659884 26.204965365261778 36.138112712989496 16.926502729088842 20 21.0200535985688 26.143940554913815 36.83454256933676 16.001463277180623 21 19.898976749602184 25.60158323954408 38.634801938512695 15.86463807234104 22 18.316725906322798 24.339946093835398 36.844704216424404 20.4986237834174 23 16.659773224993696 26.500751687245376 36.83355386853905 20.005921219221882 24 16.300270629379465 24.862254754140324 41.96853624494732 16.868938371532888 25 17.40146360674755 27.120886798702166 37.56557695360412 17.912072640946164 26 16.06677245765202 28.359014836554024 36.22984217588877 19.344370529905177 27 15.940768033765233 28.40158389867794 37.39771752928065 18.25993053827618 28 15.14793984964058 28.206425346773074 38.80804428940151 17.837590514184836 29 16.51091882711523 26.32750933635656 37.68872513074195 19.47284670578626 30 17.557678332786804 28.502486307867148 37.11895883214662 16.82087652719943 31 19.489050413304398 28.9164223751779 34.385585621214446 17.20894159030326 32 19.61785615611805 27.027784140250503 35.68226671741998 17.672092986211467 33 19.811696440292632 28.486941734214156 34.00471610280511 17.6966457226881 34 17.059977336780605 27.935136833444012 35.827990229439 19.176895600336376 35 18.465580304201264 28.4923246607795 34.25754886791012 18.78454616710911 36 21.017856485684984 29.37534432878476 32.57307734771124 17.033721837819012 37 17.84610432660962 30.259132986299353 33.851632262625294 18.04313042446573 38 18.36204135955148 29.513817368287203 33.44274955494732 18.681391717213994 39 18.40279780354625 28.429926654879157 33.393424370705674 19.77385117086892 40 19.497509297907083 26.804008193033944 34.65753326840865 19.040949240650324 41 16.874760720675 28.107500339179303 33.30542999970888 21.71230894043682 42 17.852421026150587 28.671279505166236 32.59010497256081 20.88619449612237 43 18.211868693942723 27.95990928120903 32.8040488396223 21.02417318522595 44 18.009514597343358 28.78003659291508 32.488378646040175 20.72207016370139 45 18.047359866767074 30.795997519459554 31.5377977568576 19.61884485691577 46 19.571991424668415 30.275776116394255 32.209839660194525 17.942392798742812 47 18.119150530245733 29.663221044386624 33.323611108822455 18.894017316545195 48 18.091796474842234 29.60466798603295 33.602589517244866 18.70094602187995 49 18.904728241853793 27.80270585437206 34.39486842314856 18.897697480625585 50 18.059718626738533 28.198900235146006 33.88821419214082 19.853166945974642 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2015.0 1 5653.0 2 9291.0 3 29521.5 4 49752.0 5 35174.5 6 20597.0 7 20397.5 8 20198.0 9 20435.5 10 20673.0 11 19947.0 12 19221.0 13 18553.5 14 17886.0 15 16592.0 16 15298.0 17 15297.5 18 15297.0 19 14486.0 20 13675.0 21 14898.0 22 16121.0 23 19372.5 24 22624.0 25 24876.5 26 27129.0 27 35423.0 28 43717.0 29 50606.5 30 57496.0 31 71590.0 32 85684.0 33 94909.0 34 104134.0 35 104849.5 36 105565.0 37 108002.5 38 110440.0 39 109558.5 40 108677.0 41 116903.5 42 125130.0 43 121659.0 44 118188.0 45 114630.0 46 111072.0 47 111391.0 48 111710.0 49 108563.5 50 105417.0 51 90935.5 52 76454.0 53 65609.0 54 54764.0 55 49840.0 56 44916.0 57 42570.5 58 40225.0 59 38870.5 60 37516.0 61 35460.0 62 33404.0 63 29088.5 64 24773.0 65 21327.0 66 17881.0 67 15016.5 68 12152.0 69 10359.0 70 8566.0 71 7093.5 72 5621.0 73 4406.0 74 3191.0 75 2625.5 76 2060.0 77 1571.0 78 1082.0 79 805.5 80 529.0 81 356.5 82 184.0 83 155.0 84 126.0 85 89.0 86 52.0 87 39.0 88 26.0 89 23.5 90 21.0 91 17.5 92 14.0 93 8.5 94 3.0 95 2.5 96 2.0 97 1.5 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1820571.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.56945633111724 #Duplication Level Percentage of deduplicated Percentage of total 1 76.35632434464095 20.287460252795622 2 8.739071451005428 4.643847545840042 3 3.5205731456562446 2.8061914336205294 4 2.0419009208984944 2.170087894011225 5 1.3062728865326378 1.735348020762569 6 0.9549161982955798 1.5222962538294544 7 0.7412601971766317 1.3786416307215907 8 0.5718783164345699 1.2155596764176924 9 0.4911965547801196 1.1745742871003062 >10 4.357986550407014 24.545910378993526 >50 0.506398936880287 9.292156742227457 >100 0.36968485043245236 20.019649014192215 >500 0.040033549985545515 6.958670942024179 >1k 0.0022935888012552115 0.7639031726991808 >5k 0.0 0.0 >10k+ 2.0850807284138287E-4 1.4857027547644235 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 26818 1.4730543329537822 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0856874024687859 0.0 2 0.0 0.0 0.0 0.3073211646236263 0.0 3 0.0 0.0 0.0 0.4468378327458803 0.0 4 0.0 0.0 0.0 0.6745685831533074 0.0 5 0.0 0.0 0.0 1.244005314816066 0.0 6 0.0 0.0 0.0 1.770818056532813 0.0 7 0.0 0.0 0.0 2.086268538826555 0.0 8 0.0 0.0 0.0 2.734581623018273 0.0 9 0.0 0.0 0.0 3.002684322665801 0.0 10 0.0 0.0 0.0 3.5156552532145136 0.0 11 0.0 0.0 0.0 4.0997577133767376 0.0 12 0.0 0.0 0.0 4.589274463890725 0.0 13 0.0 0.0 0.0 4.792287694355233 0.0 14 0.0 0.0 0.0 4.866495182006085 0.0 15 0.0 0.0 0.0 4.990302493009062 0.0 16 0.0 0.0 0.0 5.261591006338121 0.0 17 0.0 0.0 0.0 5.595332453389624 0.0 18 0.0 0.0 0.0 6.038874616809781 0.0 19 0.0 0.0 0.0 6.260783018075099 0.0 20 0.0 0.0 0.0 6.501257023208653 0.0 21 0.0 0.0 0.0 6.829285976762235 0.0 22 0.0 0.0 0.0 7.172639792680428 0.0 23 0.0 0.0 0.0 7.546972900260413 0.0 24 0.0 0.0 0.0 7.850339261693172 0.0 25 0.0 0.0 0.0 8.104105799773807 0.0 26 0.0 0.0 0.0 8.36847340751885 0.0 27 0.0 0.0 0.0 8.647067321186595 0.0 28 5.492782209537557E-5 0.0 0.0 8.931813150929022 0.0 29 5.492782209537557E-5 0.0 0.0 9.266378515311954 0.0 30 5.492782209537557E-5 0.0 0.0 9.637690592676693 0.0 31 5.492782209537557E-5 0.0 0.0 9.95962255797769 0.0 32 5.492782209537557E-5 0.0 0.0 10.269580258061893 0.0 33 5.492782209537557E-5 0.0 0.0 10.600135891431863 0.0 34 5.492782209537557E-5 0.0 0.0 10.928549339740114 0.0 35 5.492782209537557E-5 0.0 0.0 11.310792053701833 0.0 36 5.492782209537557E-5 0.0 0.0 11.60789664341572 0.0 37 5.492782209537557E-5 0.0 0.0 11.930872237336528 0.0 38 5.492782209537557E-5 0.0 0.0 12.286474957581989 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTAACG 65 0.0 44.000004 1 CGTATAA 35 1.446715E-7 44.0 28 CAACCCG 20 7.8576955E-4 44.0 23 CTAAGCG 30 2.5285353E-6 44.0 1 CCGCTAT 20 7.8576955E-4 44.0 25 CCCGTAT 20 7.8576955E-4 44.0 29 CGAATCG 20 7.8576955E-4 44.0 19 TTACGAG 90 0.0 44.0 1 CGACTAT 20 7.8576955E-4 44.0 23 GTCGGTT 20 7.8576955E-4 44.0 39 ACGCGTA 35 1.446715E-7 44.0 25 CATACGA 135 0.0 42.37037 18 ACATACG 130 0.0 42.307693 17 CGTTTTT 16495 0.0 42.18612 1 ATGCGAT 90 0.0 41.555557 3 ACGATAC 80 0.0 41.25 34 ATGCGAG 60 3.6379788E-12 40.333332 1 CCCTAGC 1145 0.0 39.965065 21 TGGGCGA 315 0.0 39.80952 6 GCCCTAG 1110 0.0 39.63964 20 >>END_MODULE