##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546242_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1863782 Sequences flagged as poor quality 0 Sequence length 50 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.817857453285846 31.0 31.0 34.0 30.0 34.0 2 32.20726404697545 33.0 31.0 34.0 30.0 34.0 3 32.24415999296055 33.0 31.0 34.0 30.0 34.0 4 35.94142179718443 37.0 35.0 37.0 35.0 37.0 5 35.87231017361473 37.0 35.0 37.0 35.0 37.0 6 35.95615688959331 37.0 35.0 37.0 35.0 37.0 7 36.176972414155735 37.0 35.0 37.0 35.0 37.0 8 36.06741292704834 37.0 35.0 37.0 35.0 37.0 9 37.77831366543941 39.0 38.0 39.0 35.0 39.0 10 37.40641823990145 39.0 37.0 39.0 34.0 39.0 11 37.306524046267214 39.0 37.0 39.0 34.0 39.0 12 37.048340954038615 39.0 37.0 39.0 33.0 39.0 13 36.948529388093675 39.0 37.0 39.0 33.0 39.0 14 38.089167617242786 40.0 37.0 41.0 33.0 41.0 15 38.219951689628935 40.0 37.0 41.0 33.0 41.0 16 38.259103264222965 40.0 37.0 41.0 33.0 41.0 17 38.17800472372842 40.0 37.0 41.0 33.0 41.0 18 38.0048299640194 39.0 36.0 41.0 33.0 41.0 19 37.8517380251553 39.0 36.0 41.0 34.0 41.0 20 37.61627969365516 39.0 35.0 41.0 33.0 41.0 21 37.52180941762502 39.0 35.0 41.0 33.0 41.0 22 37.446676703605895 39.0 35.0 41.0 33.0 41.0 23 37.40873879026624 39.0 35.0 41.0 33.0 41.0 24 37.35006186345828 39.0 35.0 41.0 33.0 41.0 25 37.328697240342485 39.0 35.0 41.0 33.0 41.0 26 37.29957741838906 39.0 35.0 41.0 33.0 41.0 27 37.23265864784615 39.0 35.0 41.0 33.0 41.0 28 37.13476576123173 39.0 35.0 41.0 33.0 41.0 29 37.041363743184554 39.0 35.0 41.0 32.0 41.0 30 36.853643827443335 39.0 35.0 41.0 32.0 41.0 31 36.612949368542026 39.0 35.0 41.0 31.0 41.0 32 36.34166603175693 39.0 35.0 41.0 30.0 41.0 33 35.99071833508425 39.0 35.0 41.0 29.0 41.0 34 35.63691193497952 39.0 35.0 41.0 25.0 41.0 35 35.40910578597712 39.0 35.0 41.0 24.0 41.0 36 35.27170237720935 39.0 35.0 41.0 23.0 41.0 37 35.18296399471612 39.0 35.0 41.0 23.0 41.0 38 35.094437546880485 39.0 35.0 41.0 23.0 41.0 39 35.006524368193276 39.0 35.0 41.0 22.0 41.0 40 34.88750240103188 39.0 35.0 41.0 21.0 41.0 41 34.804332266327286 38.0 34.0 41.0 21.0 41.0 42 34.74736744962662 38.0 34.0 41.0 21.0 41.0 43 34.66195402681215 38.0 34.0 41.0 20.0 41.0 44 34.51533924031888 38.0 34.0 40.0 19.0 41.0 45 34.436175475457965 38.0 34.0 40.0 20.0 41.0 46 34.36616299545762 38.0 34.0 40.0 20.0 41.0 47 34.30771088034974 38.0 34.0 40.0 20.0 41.0 48 34.24349306946843 38.0 34.0 40.0 20.0 41.0 49 34.164100737103375 38.0 34.0 40.0 20.0 41.0 50 34.0236765887856 37.0 34.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 1.0 9 4.0 10 2.0 11 5.0 12 5.0 13 12.0 14 12.0 15 53.0 16 87.0 17 255.0 18 564.0 19 1132.0 20 2056.0 21 3537.0 22 5496.0 23 8281.0 24 13344.0 25 22655.0 26 35782.0 27 45298.0 28 45530.0 29 41926.0 30 41238.0 31 44241.0 32 52537.0 33 66481.0 34 112531.0 35 169609.0 36 117834.0 37 153907.0 38 263728.0 39 615638.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.029292052396684 22.692299850519 26.09516563632442 18.183242460759896 2 38.06952744473334 22.88089486860588 28.117397850177756 10.932179836483021 3 28.958805267998084 23.46384931284882 36.14022455415923 11.437120864993867 4 25.143391233524092 25.696782134391256 36.14736058187062 13.012466050214028 5 21.528805407499373 29.57126960127311 35.64161473820436 13.258310253023154 6 19.068324514347708 38.79198318258251 33.43668948407056 8.703002818999218 7 79.31920149459539 3.8131605520388114 15.16550755399505 1.702130399370742 8 78.99110518290229 3.4239519428774394 15.050901875863165 2.5340409983571037 9 74.15894133541369 5.328734798383072 17.044858250589392 3.4674656156138433 10 34.65990121162239 28.680178261191493 24.7543972417375 11.90552328544862 11 27.57226971823958 26.062436486670652 32.55176839351384 13.813525401575935 12 25.850394520389187 23.190641394755396 36.53705208012525 14.421912004730167 13 20.800125765781623 27.522424832947202 37.19716147060117 14.480287930670002 14 15.925950567180067 29.96917021411302 38.44280071381739 15.662078504889521 15 15.271957771885338 25.55867585372109 44.48626502455759 14.683101349835978 16 18.2480569079431 23.218380690445557 41.487470101116976 17.04609230049437 17 17.919531361500432 24.075133250562565 36.41182284194181 21.593512545995186 18 18.723005158328604 25.829415672004558 39.53911991853125 15.908459251135595 19 20.779898078208717 26.24749031807368 36.09096986664749 16.881641737070108 20 21.05101347689805 26.18428550120132 36.734607373609144 16.030093648291484 21 19.90114723717688 25.600955476552517 38.590618430696296 15.907278855574312 22 18.29800910192286 24.358213567895817 36.83349232903848 20.510285001142837 23 16.654791171928906 26.51511818442286 36.85001786689645 19.980072776751786 24 16.407069067090465 24.86465691803011 41.75917569758695 16.96909831729247 25 17.48487752322965 27.101828432724428 37.50604952725158 17.907244516794346 26 16.12656415825456 28.345267847849158 36.13115697007483 19.397011023821456 27 15.919458391593007 28.261513417341728 37.4976794496352 18.32134874143006 28 15.188096032690519 28.166276957283632 38.669061081177944 17.9765659288479 29 16.50842212232976 26.394932454546723 37.633961482619746 19.462683940503773 30 17.585050182907658 28.458746784763456 37.082448483781896 16.873754548546987 31 19.491281705693048 28.95821507021744 34.333575493271205 17.216927730818306 32 19.573855740639196 27.03942843100749 35.639629527487656 17.747086300865657 33 19.848887906418238 28.457995623951724 33.98535880269259 17.707757666937443 34 16.985409237775663 27.99662192252098 35.7404996936337 19.27746914606966 35 18.500768866745148 28.47527232262142 34.1877966414527 18.83616216918073 36 20.962161883739622 29.41851568477429 32.5176978852677 17.10162454621839 37 17.853482864412253 30.27569747964086 33.72556447052284 18.14525518542405 38 18.40038158969236 29.447649993400514 33.439694127317466 18.71227428958966 39 18.360623721014584 28.334483324766524 33.416247179122884 19.888645775096016 40 19.521811027255335 26.738749488942375 34.705668366793965 19.033771117008317 41 16.852561082787577 28.06959182994578 33.29423720156113 21.78360988570552 42 17.82901648368747 28.676368802789163 32.58481946922977 20.90979524429359 43 18.220317612252934 27.94012389861046 32.84434552968104 20.995212959455557 44 18.060320359355334 28.70571772879017 32.48759779845497 20.74636411339953 45 18.04100479562524 30.743402393627584 31.506045234904086 19.709547575843096 46 19.55577422681408 30.171232472467274 32.236602778651154 18.036390522067496 47 18.06885140000279 29.672837273887183 33.25227950479187 19.00603182131816 48 18.057959568232764 29.599867366462384 33.55853849860123 18.783634566703615 49 18.92871591205409 27.759791649452563 34.361636715023536 18.949855723469806 50 18.072124314968168 28.192674894381426 33.795583389044424 19.939617401605982 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2066.0 1 5809.5 2 9553.0 3 30037.0 4 50521.0 5 35516.0 6 20511.0 7 20627.0 8 20743.0 9 20866.5 10 20990.0 11 20339.5 12 19689.0 13 18968.5 14 18248.0 15 16953.0 16 15658.0 17 15740.0 18 15822.0 19 14830.0 20 13838.0 21 15114.5 22 16391.0 23 19737.5 24 23084.0 25 25285.0 26 27486.0 27 35938.5 28 44391.0 29 51632.5 30 58874.0 31 72758.0 32 86642.0 33 95938.5 34 105235.0 35 106399.0 36 107563.0 37 110128.0 38 112693.0 39 111436.0 40 110179.0 41 118841.0 42 127503.0 43 124235.5 44 120968.0 45 117705.0 46 114442.0 47 115295.5 48 116149.0 49 112941.0 50 109733.0 51 94758.5 52 79784.0 53 68592.5 54 57401.0 55 51810.5 56 46220.0 57 43880.5 58 41541.0 59 39944.5 60 38348.0 61 36187.0 62 34026.0 63 29449.5 64 24873.0 65 21473.0 66 18073.0 67 15265.0 68 12457.0 69 10634.0 70 8811.0 71 7323.0 72 5835.0 73 4614.5 74 3394.0 75 2731.0 76 2068.0 77 1557.5 78 1047.0 79 795.0 80 543.0 81 366.0 82 189.0 83 142.0 84 95.0 85 75.5 86 56.0 87 37.0 88 18.0 89 16.5 90 15.0 91 14.5 92 14.0 93 7.0 94 0.0 95 0.5 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1863782.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.480742105855263 #Duplication Level Percentage of deduplicated Percentage of total 1 76.16709807864035 20.169612811718597 2 8.812988539833649 4.667489534103857 3 3.643992020098008 2.894868387600297 4 2.0312871745279737 2.151599672464268 5 1.3261325691857004 1.7558487281390902 6 0.9290765204836066 1.476158144131905 7 0.7421262059869942 1.375643686951689 8 0.5727509281844759 1.2133495696113872 9 0.48771751993266566 1.162360967925982 >10 4.3587600076412585 24.43088289115606 >50 0.5145355930875151 9.385597384333092 >100 0.371320686562079 20.08472888521848 >500 0.03975507879670463 6.963955752478311 >1k 0.0022541539523904686 0.7794104079484928 >5k 0.0 0.0 >10k+ 2.049230865809517E-4 1.4884931762185587 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 27430 1.4717386475456893 No Hit TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1874 0.10054824008387246 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.08756388890975447 0.0 2 0.0 0.0 0.0 0.3032543505624585 0.0 3 0.0 0.0 0.0 0.44667241125839824 0.0 4 0.0 0.0 0.0 0.6755618414599991 0.0 5 0.0 0.0 0.0 1.2495023559622316 0.0 6 0.0 0.0 0.0 1.7851336690664465 0.0 7 0.0 0.0 0.0 2.1052354835490417 0.0 8 0.0 0.0 0.0 2.771193197487689 0.0 9 0.0 0.0 0.0 3.0459570915482606 0.0 10 0.0 0.0 0.0 3.5677455839792422 0.0 11 0.0 0.0 0.0 4.188043451433698 0.0 12 0.0 0.0 0.0 4.687511736887683 0.0 13 0.0 0.0 0.0 4.898802542357422 0.0 14 0.0 0.0 0.0 4.976333068996267 0.0 15 0.0 0.0 0.0 5.10735697629873 0.0 16 0.0 0.0 0.0 5.39419309769061 0.0 17 5.365434369470249E-5 0.0 0.0 5.739405145022325 0.0 18 5.365434369470249E-5 0.0 0.0 6.20029595735982 0.0 19 5.365434369470249E-5 0.0 0.0 6.43122425262182 0.0 20 5.365434369470249E-5 0.0 0.0 6.688926065387475 0.0 21 5.365434369470249E-5 0.0 0.0 7.030865197753815 0.0 22 5.365434369470249E-5 0.0 0.0 7.391905276475468 0.0 23 5.365434369470249E-5 0.0 0.0 7.7845477636333005 0.0 24 5.365434369470249E-5 0.0 0.0 8.103522836898307 0.0 25 5.365434369470249E-5 0.0 0.0 8.372384753152462 0.0 26 5.365434369470249E-5 0.0 0.0 8.64586094296436 0.0 27 5.365434369470249E-5 0.0 0.0 8.935111509822502 0.0 28 5.365434369470249E-5 0.0 0.0 9.230371363174449 0.0 29 5.365434369470249E-5 0.0 0.0 9.578480745065677 0.0 30 5.365434369470249E-5 0.0 0.0 9.963772587137337 0.0 31 5.365434369470249E-5 0.0 0.0 10.296375863700797 0.0 32 5.365434369470249E-5 0.0 0.0 10.621413877803306 0.0 33 5.365434369470249E-5 0.0 0.0 10.97140116172385 0.0 34 5.365434369470249E-5 0.0 0.0 11.314627998338862 0.0 35 5.365434369470249E-5 0.0 0.0 11.724064295073136 0.0 36 5.365434369470249E-5 0.0 0.0 12.030055017164024 0.0 37 5.365434369470249E-5 0.0 0.0 12.356756315921068 0.0 38 5.365434369470249E-5 0.0 0.0 12.73169286965965 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTCGA 40 8.3164196E-9 44.0 14 CATTACG 30 2.528568E-6 44.0 20 TATACGC 20 7.857744E-4 44.0 39 TAGTCGG 25 4.443909E-5 44.0 2 ACGACTT 25 4.443909E-5 44.0 39 GTCGGTA 20 7.857744E-4 44.0 26 CGTTTTT 16320 0.0 42.449757 1 TACGCGG 160 0.0 41.25 2 GTCAACG 150 0.0 41.066666 1 TTAATCG 70 0.0 40.85714 20 CATACGA 225 0.0 40.08889 18 ATTACGC 55 7.8216544E-11 40.0 38 ACGATAC 110 0.0 40.0 34 TATTACG 55 7.8216544E-11 40.0 37 AGTAGCG 110 0.0 40.0 1 GTACGCG 155 0.0 39.741936 1 CATTCGA 95 0.0 39.36842 25 TCACGAC 140 0.0 39.28571 25 TATCGCT 45 2.3523171E-8 39.11111 35 AACGGGA 650 0.0 38.923077 4 >>END_MODULE