##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546241_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1432538 Sequences flagged as poor quality 0 Sequence length 50 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.856071531784846 31.0 31.0 34.0 30.0 34.0 2 32.21667418246497 33.0 31.0 34.0 30.0 34.0 3 32.16744477284372 33.0 31.0 34.0 30.0 34.0 4 35.90638991775436 37.0 35.0 37.0 35.0 37.0 5 35.90317604140344 37.0 35.0 37.0 35.0 37.0 6 35.9593169605274 37.0 35.0 37.0 35.0 37.0 7 36.167804972712766 37.0 35.0 37.0 35.0 37.0 8 36.073471000420234 37.0 35.0 37.0 35.0 37.0 9 37.83130011210872 39.0 38.0 39.0 35.0 39.0 10 37.40625100346378 39.0 37.0 39.0 34.0 39.0 11 37.27498188529729 39.0 37.0 39.0 34.0 39.0 12 36.964590119075375 39.0 35.0 39.0 33.0 39.0 13 36.85148386988687 39.0 35.0 39.0 33.0 39.0 14 38.011689044199876 40.0 36.0 41.0 33.0 41.0 15 38.143975238353185 40.0 36.0 41.0 33.0 41.0 16 38.212070465146475 40.0 36.0 41.0 33.0 41.0 17 38.12694532361445 40.0 36.0 41.0 33.0 41.0 18 37.94964531481887 39.0 36.0 41.0 33.0 41.0 19 37.762850269940486 39.0 36.0 41.0 34.0 41.0 20 37.514612526857924 39.0 35.0 41.0 33.0 41.0 21 37.43800164463351 39.0 35.0 41.0 33.0 41.0 22 37.36225566093186 39.0 35.0 41.0 33.0 41.0 23 37.30921204184462 39.0 35.0 41.0 33.0 41.0 24 37.26791191577466 39.0 35.0 41.0 33.0 41.0 25 37.24675436183892 39.0 35.0 41.0 33.0 41.0 26 37.19726248099527 39.0 35.0 41.0 33.0 41.0 27 37.127358576177386 39.0 35.0 41.0 33.0 41.0 28 37.04797289845016 39.0 35.0 41.0 33.0 41.0 29 36.95540083404419 39.0 35.0 41.0 32.0 41.0 30 36.77084377517385 39.0 35.0 41.0 32.0 41.0 31 36.49102362380614 39.0 35.0 41.0 31.0 41.0 32 36.2047352321544 39.0 35.0 41.0 30.0 41.0 33 35.84158046767346 39.0 35.0 41.0 28.0 41.0 34 35.42230921623022 39.0 35.0 41.0 24.0 41.0 35 35.19178060198054 39.0 35.0 41.0 23.0 41.0 36 35.01383558411714 38.0 35.0 41.0 22.0 41.0 37 34.986033180271654 39.0 35.0 41.0 22.0 41.0 38 34.90231951962182 38.0 35.0 41.0 21.0 41.0 39 34.81267791849152 38.0 35.0 41.0 21.0 41.0 40 34.67864936218097 38.0 34.0 41.0 20.0 41.0 41 34.564761283819344 38.0 34.0 41.0 18.0 41.0 42 34.516923111289195 38.0 34.0 41.0 18.0 41.0 43 34.40933713451231 38.0 34.0 41.0 18.0 41.0 44 34.309304884058925 38.0 34.0 40.0 18.0 41.0 45 34.25796034729969 38.0 34.0 40.0 18.0 41.0 46 34.192954741863744 38.0 34.0 40.0 18.0 41.0 47 34.183402464716465 38.0 34.0 40.0 18.0 41.0 48 34.123093418813326 38.0 34.0 40.0 18.0 41.0 49 34.03979231266465 37.0 34.0 40.0 18.0 41.0 50 33.89296060558254 37.0 33.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 4.0 11 3.0 12 3.0 13 10.0 14 17.0 15 27.0 16 90.0 17 199.0 18 506.0 19 977.0 20 1799.0 21 2927.0 22 4746.0 23 7416.0 24 11402.0 25 18889.0 26 29829.0 27 36548.0 28 35569.0 29 32125.0 30 31646.0 31 34122.0 32 39476.0 33 50620.0 34 87010.0 35 146600.0 36 85092.0 37 112267.0 38 191657.0 39 470960.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.83475761201448 22.492387636488527 27.1643055891013 18.508549162395692 2 36.77361438230609 23.764675003385598 28.030530429210256 11.431180185098057 3 26.803686883000662 23.2002920690411 39.35071879419604 10.645302253762203 4 23.465695150844166 26.594128742134586 37.95522352635672 11.984952580664526 5 20.309478701437587 30.118642577020644 36.756511869144134 12.815366852397633 6 17.95791804475693 40.13959839110725 33.54563718379547 8.356846380340347 7 80.26139620729083 3.2272791367489027 14.94145356004518 1.5698710959150823 8 80.65517284707282 2.8052309956175683 14.590188881551484 1.94940727575813 9 76.40851411969525 4.09762254125196 16.317821935613573 3.1760414034392106 10 35.08584065483778 30.596884689969826 24.16955082517881 10.147723830013584 11 28.065852354352906 23.324198031745055 33.99637566333319 14.613573950568851 12 28.437640048640944 21.489761528140964 37.07971446481699 12.992883958401102 13 19.91193252814236 29.256955138362823 35.44722722887631 15.383885104618516 14 14.595912987997526 31.674343019172962 36.30877505518178 17.420968937647725 15 13.193855939598112 25.944303048156485 44.79657782201938 16.065263190226016 16 16.004462010780866 23.123575081428903 41.3575765529431 19.514386354847133 17 16.415899613134172 22.923091743465097 36.63044191497887 24.030566728421864 18 17.25922802745896 26.112675545081526 40.97182762342081 15.656268804038707 19 19.33002824357888 28.00777361577843 34.18492214517171 18.477275995470976 20 21.15922928397013 24.243964208977353 37.48389222484849 17.112914282204034 21 18.0703757945688 26.75147186322457 38.04883360860236 17.129318733604272 22 18.753568840756753 24.119290378335513 35.251490710892135 21.875650070015595 23 15.888513952160432 26.73897655768992 35.73887743291975 21.633632057229896 24 14.326181923271845 25.332731138720227 45.13311339734094 15.207973540666982 25 15.445733376706238 30.77223780451199 36.98631380109987 16.795715017681903 26 16.516141282116077 27.745721230431585 35.749627584050124 19.988509903402214 27 14.327368628266754 30.227121374790755 35.50418906863204 19.941320928310454 28 13.092846402678324 28.777247095714042 38.70570972637375 19.424196775233884 29 14.665998388873454 25.119124239636225 37.68863373955874 22.526243631931578 30 16.185120394712044 29.458415762793027 37.24166479353428 17.114799048960656 31 18.400140170801752 32.79473214672141 32.27502516512651 16.530102517350326 32 19.18692558242783 27.319135687849116 33.061182321167045 20.432756408556003 33 18.44823662618374 31.221231129645428 31.735214004794287 18.595318239376546 34 16.646259994499275 27.319903555787 34.4699407624789 21.563895687234826 35 18.716152730328968 28.346193957856613 33.24721578066341 19.690437531151005 36 22.0135172679538 30.667807764959814 30.764559125133157 16.554115841953234 37 16.632717596322053 33.11067490007245 33.76601528196809 16.4905922216374 38 17.05602224862447 29.335626698907813 35.751861381687604 17.856489670780114 39 16.706293306006543 31.63211028258936 32.72541461378337 18.936181797620726 40 18.77862925800223 28.239948957723982 33.66821682915217 19.31320495512161 41 16.559351305166075 29.233779487873967 33.30222304748635 20.904646159473607 42 17.37357054402745 28.744717417618244 31.358539878174263 22.523172160180042 43 16.965623250482707 28.059779217026005 32.8911344760139 22.083463056477385 44 16.020936268357282 29.399429543928328 32.77092824064702 21.808705947067374 45 16.487520749885867 34.667213016338835 28.978568107791908 19.866698125983394 46 18.30450570944715 31.542688570914002 32.74174925900744 17.41105646063141 47 16.941958956760658 31.42813663581699 33.20149273527125 18.428411672151103 48 16.340299524340715 28.874696517649095 34.947973456899575 19.83703050111062 49 17.78675330078504 28.57439034776041 34.43357174469369 19.205284606760866 50 17.446867029007258 29.789646068725578 33.81655495351607 18.946931948751097 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1728.0 1 4434.0 2 7140.0 3 22570.5 4 38001.0 5 27403.5 6 16806.0 7 16773.5 8 16741.0 9 16988.0 10 17235.0 11 16757.5 12 16280.0 13 15068.5 14 13857.0 15 12975.5 16 12094.0 17 11504.5 18 10915.0 19 10593.5 20 10272.0 21 10369.5 22 10467.0 23 12322.0 24 14177.0 25 19345.5 26 24514.0 27 26919.0 28 29324.0 29 37444.0 30 45564.0 31 53632.5 32 61701.0 33 74119.5 34 86538.0 35 94431.5 36 102325.0 37 98724.5 38 95124.0 39 97564.5 40 100005.0 41 100485.5 42 100966.0 43 97889.5 44 94813.0 45 92301.5 46 89790.0 47 87107.0 48 84424.0 49 79929.5 50 75435.0 51 64195.0 52 52955.0 53 45510.5 54 38066.0 55 34239.0 56 30412.0 57 29608.0 58 28804.0 59 27277.0 60 25750.0 61 23599.5 62 21449.0 63 19858.0 64 18267.0 65 16430.0 66 14593.0 67 12273.0 68 9953.0 69 7991.5 70 6030.0 71 5136.0 72 4242.0 73 3518.5 74 2795.0 75 2115.0 76 1435.0 77 1077.5 78 720.0 79 579.5 80 439.0 81 325.0 82 211.0 83 147.5 84 84.0 85 75.5 86 67.0 87 43.5 88 20.0 89 14.0 90 8.0 91 4.5 92 1.0 93 0.5 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1432538.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.665015650781537 #Duplication Level Percentage of deduplicated Percentage of total 1 77.95027130949659 20.00594933140897 2 8.577537685707862 4.4028527789772145 3 3.212324730888038 2.4733309348090224 4 1.714837786581298 1.7604535452464234 5 1.12523860503771 1.4439633204578206 6 0.7747083472180677 1.1929741113685683 7 0.5972007060950897 1.0729015828011783 8 0.4957009646593606 1.0177738412871995 9 0.4046968282920973 0.9347895388744494 >10 4.133293519724404 23.062956878627457 >50 0.5124368121707256 9.052028167872612 >100 0.45738374230276546 24.825159677259453 >500 0.04190401950234998 6.675207727494474 >1k 0.0021910598432601297 0.6814104682862078 >5k 0.0 0.0 >10k+ 2.738824804075162E-4 1.3982480952289298 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 19892 1.3885844563983643 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCACTACAGGTCGTATGCC 1505 0.1050582951377206 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0725286170419214 0.0 2 0.0 0.0 0.0 0.2899748558153431 0.0 3 0.0 0.0 0.0 0.4193955064368275 0.0 4 0.0 0.0 0.0 0.6268594620177614 0.0 5 0.0 0.0 0.0 1.143076134804103 0.0 6 0.0 0.0 0.0 1.5277779716838227 0.0 7 0.0 0.0 0.0 1.7889228767404426 0.0 8 0.0 0.0 0.0 2.3365523288038434 0.0 9 0.0 0.0 0.0 2.556302171390916 0.0 10 0.0 0.0 0.0 3.075799734457306 0.0 11 0.0 0.0 0.0 3.5844773402171533 0.0 12 0.0 0.0 0.0 4.027886171256888 0.0 13 0.0 0.0 0.0 4.186276384989438 0.0 14 0.0 0.0 0.0 4.251405547357208 0.0 15 0.0 0.0 0.0 4.362886010702683 0.0 16 0.0 0.0 0.0 4.594712321767381 0.0 17 0.0 0.0 0.0 4.864582998845406 0.0 18 0.0 0.0 0.0 5.242932473693543 0.0 19 0.0 0.0 0.0 5.431409149355899 0.0 20 0.0 0.0 0.0 5.636918532004038 0.0 21 0.0 0.0 0.0 5.914537694637071 0.0 22 0.0 0.0 0.0 6.217566305396436 0.0 23 0.0 0.0 0.0 6.548796611328984 0.0 24 0.0 0.0 0.0 6.806730432281727 0.0 25 0.0 0.0 0.0 7.03778887540854 0.0 26 0.0 0.0 0.0 7.281133205541494 0.0 27 0.0 0.0 0.0 7.525035985083816 0.0 28 0.0 0.0 0.0 7.7622373717137 0.0 29 0.0 0.0 0.0 8.056889241332517 0.0 30 0.0 0.0 0.0 8.402918456613367 0.0 31 0.0 0.0 0.0 8.691636801257628 0.0 32 0.0 0.0 0.0 8.95794736335092 0.0 33 0.0 0.0 0.0 9.23717206803589 0.0 34 0.0 0.0 0.0 9.533359673530475 0.0 35 0.0 0.0 0.0 9.915827712772716 0.0 36 0.0 0.0 0.0 10.184441878679658 0.0 37 0.0 0.0 0.0 10.465272125416568 0.0 38 0.0 0.0 0.0 10.772698525274722 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGCGTTA 40 8.314601E-9 44.0 11 TCGTTAG 25 4.4433902E-5 44.0 1 GATCGAC 20 7.857132E-4 44.0 10 CGCATGG 100 0.0 44.0 2 TAAGTCG 35 1.446424E-7 44.0 38 ACGGGTA 295 0.0 44.0 5 GTTACCG 20 7.857132E-4 44.0 38 GTAGCGT 20 7.857132E-4 44.0 9 ACCGTAC 50 2.7284841E-11 44.0 29 TTCGACT 30 2.5281552E-6 44.0 41 CGTCAAC 20 7.857132E-4 44.0 26 GTAACGA 30 2.5281552E-6 44.0 36 ACCTTAC 20 7.857132E-4 44.0 10 CGGGTAT 380 0.0 43.42105 6 AGTACGG 220 0.0 43.000004 2 CGTTTTT 12975 0.0 42.338345 1 TACGGGT 115 0.0 42.086952 4 ACATACG 675 0.0 42.044445 17 ACGGGAT 495 0.0 41.77778 5 TACGGGA 455 0.0 41.58242 4 >>END_MODULE