##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546235_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2087475 Sequences flagged as poor quality 0 Sequence length 50 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.847515299584426 31.0 31.0 34.0 30.0 34.0 2 32.196404747362244 33.0 31.0 34.0 30.0 34.0 3 32.10465275033234 33.0 31.0 34.0 30.0 34.0 4 35.85548138301058 37.0 35.0 37.0 35.0 37.0 5 35.84830285392639 37.0 35.0 37.0 35.0 37.0 6 35.91845028084169 37.0 35.0 37.0 35.0 37.0 7 36.16902861112109 37.0 35.0 37.0 35.0 37.0 8 36.06706858764775 37.0 35.0 37.0 35.0 37.0 9 37.80645947855663 39.0 38.0 39.0 35.0 39.0 10 37.43318410998934 39.0 37.0 39.0 34.0 39.0 11 37.2747549072444 39.0 37.0 39.0 34.0 39.0 12 36.773201116181035 39.0 35.0 39.0 33.0 39.0 13 36.577014335501026 39.0 35.0 39.0 33.0 39.0 14 37.635872046371816 40.0 35.0 41.0 33.0 41.0 15 37.84811889962754 40.0 35.0 41.0 33.0 41.0 16 37.949905507850396 40.0 35.0 41.0 33.0 41.0 17 37.8588083689625 40.0 35.0 41.0 33.0 41.0 18 37.683118600222755 39.0 36.0 41.0 33.0 41.0 19 37.47377573384112 39.0 36.0 41.0 33.0 41.0 20 37.21156947987401 38.0 35.0 41.0 33.0 41.0 21 37.11743853219799 38.0 35.0 41.0 33.0 41.0 22 37.05557144396939 38.0 35.0 41.0 33.0 41.0 23 37.00428987173499 38.0 35.0 41.0 33.0 41.0 24 36.93583587827399 38.0 35.0 41.0 33.0 41.0 25 36.872256194684965 38.0 35.0 41.0 33.0 41.0 26 36.806746428100936 38.0 35.0 41.0 33.0 41.0 27 36.743277404519816 38.0 35.0 41.0 32.0 41.0 28 36.64890166349298 38.0 35.0 41.0 32.0 41.0 29 36.54777182960275 38.0 35.0 41.0 32.0 41.0 30 36.33848022132002 38.0 35.0 41.0 31.0 41.0 31 35.99828117702008 38.0 35.0 41.0 30.0 41.0 32 35.656853375489526 38.0 35.0 41.0 29.0 41.0 33 35.26302398831124 38.0 35.0 41.0 25.0 41.0 34 34.809671972119425 38.0 34.0 41.0 23.0 41.0 35 34.5724705685098 38.0 34.0 41.0 21.0 41.0 36 34.42544078372196 38.0 34.0 41.0 19.0 41.0 37 34.38853591060971 38.0 34.0 41.0 19.0 41.0 38 34.35436160912107 38.0 34.0 41.0 18.0 41.0 39 34.26407980933904 38.0 34.0 40.0 18.0 41.0 40 34.1152315596594 38.0 34.0 40.0 18.0 41.0 41 33.98302398831124 37.0 34.0 40.0 18.0 41.0 42 33.90522760751626 37.0 34.0 40.0 18.0 41.0 43 33.80350950310782 37.0 33.0 40.0 17.0 41.0 44 33.701961939663946 37.0 33.0 40.0 16.0 41.0 45 33.66422591887328 37.0 33.0 40.0 17.0 41.0 46 33.595610007305474 37.0 33.0 40.0 17.0 41.0 47 33.545918873279916 37.0 33.0 40.0 17.0 41.0 48 33.46347573024827 36.0 33.0 40.0 16.0 41.0 49 33.40483454891675 36.0 33.0 40.0 15.0 41.0 50 33.22630929711733 36.0 33.0 40.0 15.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 3.0 12 5.0 13 7.0 14 25.0 15 52.0 16 127.0 17 360.0 18 799.0 19 1645.0 20 2982.0 21 4951.0 22 7883.0 23 12274.0 24 19318.0 25 31656.0 26 49055.0 27 59802.0 28 57605.0 29 50819.0 30 49139.0 31 52172.0 32 61974.0 33 79074.0 34 142854.0 35 264189.0 36 118863.0 37 151704.0 38 257499.0 39 610637.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.79684786644152 22.590641804093462 26.649420951149118 17.963089378315907 2 38.715050479646465 23.466532533323754 28.00344914310351 9.814967843926274 3 28.46980203355729 23.323728427885364 37.38760943244829 10.818860106109057 4 23.53877291943616 25.69616402591648 38.022251763494175 12.742811291153188 5 19.377573384112385 29.788428603935373 37.5896717325956 13.244326279356638 6 17.904549755086887 39.105234793231055 35.345093953220996 7.645121498461059 7 78.62920514018133 3.540784919579875 16.177535060300123 1.652474879938682 8 78.64716942717877 3.0162277392543624 16.01753314410951 2.319069689457359 9 74.50005389286099 4.463766033126145 17.821578701541334 3.214601372471527 10 39.29910537850753 26.138756152768295 24.62261823494892 9.939520233775255 11 32.51368279859639 22.379333884238132 32.45064012742668 12.6563431897388 12 31.38509443226865 20.751817387034574 35.58763578006922 12.275452400627552 13 18.794620294853832 32.889495682583025 35.72119426579959 12.594689756763556 14 13.569455921627805 35.550317967879856 38.175882345896355 12.704343764595983 15 13.024635025569168 23.93456209056396 50.36074683529144 12.680056048575434 16 15.528138061533673 20.658738428005126 46.90269344543048 16.910430065030717 17 15.701649121546366 20.98937711828884 37.10813303153331 26.20084072863148 18 17.323656570737374 24.533515371441574 42.62920514018132 15.513622917639733 19 20.59555204253943 24.535000419166696 37.04513826512893 17.82430927316495 20 20.486377082360267 25.617791829842275 37.92380747074816 15.972023617049306 21 17.884381848884416 26.463023509263582 39.5049042503503 16.147690391501694 22 18.328794356818644 23.070312219308015 36.415094791554395 22.18579863231895 23 14.934214781015342 26.2577515898394 35.91669361309716 22.891340016048094 24 14.217224158373154 24.44450831746488 45.25649408974958 16.081773434412387 25 15.333309380950668 26.04826405106648 41.40131019533168 17.21711637265117 26 14.439262745661624 27.64785207008467 38.12198948490401 19.790895699349694 27 14.58973161355226 31.35798033509383 36.75742224457778 17.29486580677613 28 14.121558342016073 27.32736919005018 40.87047749074839 17.680594977185354 29 14.460340842405298 25.507706679121906 40.182277632067446 19.849674846405346 30 17.090743601719783 29.393789147175415 36.70305033593217 16.812416915172637 31 20.199762871411632 28.85356710858813 34.0575096707745 16.88916034922574 32 21.51642534641133 25.693577168588845 35.93906513850465 16.850932346495167 33 21.187654941975353 28.950238925017064 32.284841734631556 17.577264398376027 34 16.880681205762944 27.72866740919053 34.37732188409442 21.013329500952107 35 17.83408184529156 27.139007652786262 34.658810285153116 20.368100216769065 36 24.30338087881292 27.10106707864765 31.73460760009102 16.86094444244841 37 16.126229056635406 31.95405933005186 35.301596426304506 16.61811518700823 38 17.223487706439595 30.263595971209234 33.15570246350256 19.35721385884861 39 16.974382926741637 30.189056156361154 33.40796895771207 19.42859195918514 40 19.883016563072612 26.540006467143318 32.19995449047294 21.37702247931113 41 16.86137558533635 26.931963257044995 33.36437562126493 22.842285536353728 42 18.345177786560317 27.896190373537404 32.28900944921496 21.469622390687313 43 17.32068647528713 26.004095857435416 34.51001808404891 22.165199583228542 44 16.257823446987388 28.243931065042695 33.68677469191248 21.81147079605744 45 17.062527694942453 32.85519587060923 30.44664007952191 19.635636354926405 46 20.651696427502124 28.294470592462183 33.190193894537664 17.86363908549803 47 17.284997425118863 29.6694810716296 34.334015976239236 18.7115055270123 48 16.783530341680738 28.872920633780048 34.93574773350579 19.407801291033426 49 19.563731302171284 25.646343069976886 35.68253512018108 19.10739050767075 50 17.54243763398364 29.116707984526762 33.05222817039725 20.288626211092346 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2826.0 1 6013.0 2 9200.0 3 30936.0 4 52672.0 5 38741.5 6 24811.0 7 26341.5 8 27872.0 9 28650.5 10 29429.0 11 29123.0 12 28817.0 13 26578.0 14 24339.0 15 23206.5 16 22074.0 17 20229.5 18 18385.0 19 19495.0 20 20605.0 21 20079.0 22 19553.0 23 23591.5 24 27630.0 25 32841.0 26 38052.0 27 37756.5 28 37461.0 29 47783.5 30 58106.0 31 68959.5 32 79813.0 33 93062.0 34 106311.0 35 111860.0 36 117409.0 37 114028.0 38 110647.0 39 114429.5 40 118212.0 41 140588.5 42 162965.0 43 156579.5 44 150194.0 45 149266.0 46 148338.0 47 143569.0 48 138800.0 49 134834.5 50 130869.0 51 111411.0 52 91953.0 53 77863.0 54 63773.0 55 55874.0 56 47975.0 57 44136.5 58 40298.0 59 38082.5 60 35867.0 61 33078.0 62 30289.0 63 26560.0 64 22831.0 65 20148.5 66 17466.0 67 14050.0 68 10634.0 69 9255.5 70 7877.0 71 6840.0 72 5803.0 73 4387.0 74 2971.0 75 2391.0 76 1811.0 77 1513.0 78 1215.0 79 1007.0 80 799.0 81 538.0 82 277.0 83 211.0 84 145.0 85 93.5 86 42.0 87 36.5 88 31.0 89 20.0 90 9.0 91 6.0 92 3.0 93 4.0 94 5.0 95 3.0 96 1.0 97 5.5 98 10.0 99 5.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2087475.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.859740207439092 #Duplication Level Percentage of deduplicated Percentage of total 1 77.69919807876241 17.761834824068593 2 9.062423300432894 4.143292845954774 3 3.6154766461507957 2.4794657057121117 4 1.8422639132917216 1.6845469780555542 5 1.176762775083349 1.345024566209522 6 0.7877264000800432 1.0804332516222612 7 0.5754105129172529 0.9207614386542374 8 0.46692945605619224 0.8539108848516324 9 0.37012913773772677 0.7614950338699088 >10 3.055605047198139 15.14185434161639 >50 0.7702494089556808 12.388955715845917 >100 0.48821379072604726 22.16502084213552 >500 0.06720864945584558 10.759775418255101 >1k 0.022191535197684863 7.095962385580074 >5k 0.0 0.0 >10k+ 2.1134795426366534E-4 1.4176657675684168 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 29343 1.405669528976395 No Hit GGAAATGGGAAAATATAGATATATATTAGAACAAGAACAATTTATGTTAA 2746 0.13154648558665372 No Hit TAAGTGAGGGATTTGAGGCTATTTTCACTTATAGAATAGACCATGTTAGA 2298 0.11008515072036791 No Hit AACTAGGGGTCAATGATATAGAATATTATACATTTCATTGTTTTGTTATG 2205 0.10563000754500054 No Hit TTTTAAGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 2112 0.10117486436963317 No Hit ATGTACGGCTGGATTTCGATTTAATTTTTTCTTGTTTTTCTAACTTTGTA 2101 0.10064791195104134 No Hit GTGTAAGGGATGCAAATAAAAACTTTGATTTGTTGATTTGTTTTTTTTTT 2093 0.10026467382842907 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.08967772069126577 0.0 2 0.0 0.0 0.0 0.3162193559204302 0.0 3 0.0 0.0 0.0 0.4595504137774105 0.0 4 0.0 0.0 0.0 0.7304518616989425 0.0 5 0.0 0.0 0.0 1.296398759266578 0.0 6 0.0 0.0 0.0 1.7781290793901723 0.0 7 0.0 0.0 0.0 2.074515862465419 0.0 8 0.0 0.0 0.0 2.843195726894933 0.0 9 0.0 0.0 0.0 3.1624330830309346 0.0 10 0.0 0.0 0.0 3.784524365561264 0.0 11 0.0 0.0 0.0 4.439095078982982 0.0 12 0.0 0.0 0.0 4.974574545802944 0.0 13 0.0 0.0 0.0 5.1779781793793935 0.0 14 0.0 0.0 0.0 5.2578354231787205 0.0 15 0.0 0.0 0.0 5.394364004359334 0.0 16 0.0 0.0 0.0 5.6942478353034165 0.0 17 0.0 0.0 0.0 6.03432376435646 0.0 18 0.0 0.0 0.0 6.571623612258829 0.0 19 0.0 0.0 0.0 6.806644390950789 0.0 20 0.0 0.0 0.0 7.0835339345381385 0.0 21 0.0 0.0 0.0 7.4141726248218545 0.0 22 0.0 0.0 0.0 7.750272458352795 0.0 23 0.0 0.0 0.0 8.150325153594654 0.0 24 0.0 0.0 0.0 8.44824488916035 0.0 25 0.0 0.0 0.0 8.676367381645289 0.0 26 0.0 0.0 0.0 8.928202732966861 0.0 27 0.0 0.0 0.0 9.21697265835519 0.0 28 0.0 0.0 0.0 9.480784201008396 0.0 29 0.0 0.0 0.0 9.803326985951928 0.0 30 0.0 0.0 0.0 10.188672918238542 0.0 31 0.0 0.0 0.0 10.534689038192074 0.0 32 0.0 0.0 0.0 10.861016299596402 0.0 33 0.0 0.0 0.0 11.188876513491179 0.0 34 0.0 0.0 0.0 11.537910633660283 0.0 35 0.0 0.0 0.0 11.97389190289704 0.0 36 0.0 0.0 0.0 12.300650307189308 0.0 37 0.0 0.0 0.0 12.655145570605637 0.0 38 4.7904765326530856E-5 0.0 0.0 13.037281883615373 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AAACTCG 30 2.5287136E-6 44.0 32 TCGTTAG 25 4.4440938E-5 44.0 1 GGTACGA 25 4.4440938E-5 44.0 11 CGAACTA 50 2.7284841E-11 44.0 43 GTCGAAC 90 0.0 44.0 21 CTATCGG 195 0.0 44.0 1 CGCATCG 20 7.8579603E-4 44.0 21 GGCGTAT 20 7.8579603E-4 44.0 25 GTAATCG 20 7.8579603E-4 44.0 1 CATTACG 80 0.0 44.0 21 ATCCGAT 110 0.0 44.0 38 TACGACG 25 4.4440938E-5 44.0 1 ACGTCGG 20 7.8579603E-4 44.0 3 TCATACG 80 0.0 44.0 1 CGTTTGG 30 2.5287136E-6 44.0 2 CGATACG 20 7.8579603E-4 44.0 10 CCGTTGC 40 8.3182385E-9 44.0 28 TATCGAA 210 0.0 42.95238 44 AACGTAC 170 0.0 42.705883 14 CGTTTTT 20115 0.0 42.62192 1 >>END_MODULE