##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546232_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1860441 Sequences flagged as poor quality 0 Sequence length 50 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.854116308982654 31.0 31.0 34.0 30.0 34.0 2 32.235161985787244 33.0 31.0 34.0 30.0 34.0 3 32.22209250387408 33.0 31.0 34.0 30.0 34.0 4 35.94150419174809 37.0 35.0 37.0 35.0 37.0 5 35.87428142037291 37.0 35.0 37.0 35.0 37.0 6 35.954540348229266 37.0 35.0 37.0 35.0 37.0 7 36.18915998948636 37.0 35.0 37.0 35.0 37.0 8 36.085864588019724 37.0 35.0 37.0 35.0 37.0 9 37.841539183451665 39.0 38.0 39.0 35.0 39.0 10 37.49344107122989 39.0 37.0 39.0 35.0 39.0 11 37.32966753581543 39.0 37.0 39.0 34.0 39.0 12 36.6942165862825 39.0 35.0 39.0 33.0 39.0 13 36.42485249465046 39.0 35.0 39.0 33.0 39.0 14 37.54370012271284 40.0 35.0 41.0 33.0 41.0 15 37.769891117213604 40.0 35.0 41.0 33.0 41.0 16 37.859530616665616 40.0 35.0 41.0 33.0 41.0 17 37.7768432323304 40.0 35.0 41.0 33.0 41.0 18 37.57197890177651 39.0 36.0 41.0 33.0 41.0 19 37.27224835401929 38.0 35.0 41.0 33.0 41.0 20 36.93223810913649 38.0 35.0 41.0 33.0 41.0 21 36.84416221745274 38.0 35.0 41.0 33.0 41.0 22 36.76288417638614 37.0 35.0 41.0 33.0 41.0 23 36.7068480000172 37.0 35.0 41.0 33.0 41.0 24 36.658426684855904 37.0 35.0 41.0 33.0 41.0 25 36.63102135461431 37.0 35.0 41.0 33.0 41.0 26 36.59220152641229 37.0 35.0 41.0 33.0 41.0 27 36.493307231995 37.0 35.0 41.0 32.0 41.0 28 36.40942711969904 37.0 35.0 41.0 32.0 41.0 29 36.285305473272196 37.0 35.0 41.0 32.0 41.0 30 36.051717845392574 37.0 35.0 40.0 31.0 41.0 31 35.653434320142374 37.0 35.0 40.0 30.0 41.0 32 35.18736955377784 37.0 35.0 40.0 27.0 41.0 33 34.662584301249005 37.0 34.0 40.0 23.0 41.0 34 34.210515678809486 37.0 34.0 40.0 19.0 41.0 35 33.87928883528153 37.0 34.0 40.0 18.0 41.0 36 33.71276756424955 36.0 33.0 40.0 16.0 41.0 37 33.603201068993855 36.0 33.0 40.0 15.0 41.0 38 33.576547173492735 36.0 33.0 40.0 15.0 41.0 39 33.51253493123404 36.0 33.0 40.0 15.0 41.0 40 33.382666797818366 36.0 33.0 40.0 15.0 41.0 41 33.30183757506957 36.0 33.0 40.0 15.0 41.0 42 33.219698985348096 36.0 33.0 40.0 12.0 41.0 43 33.09116763176043 36.0 33.0 40.0 12.0 41.0 44 32.947760772849016 35.0 33.0 40.0 10.0 41.0 45 32.88355234054721 35.0 33.0 40.0 10.0 41.0 46 32.82598050677232 35.0 33.0 40.0 10.0 41.0 47 32.75444907954619 35.0 32.0 40.0 10.0 41.0 48 32.69312705965951 35.0 32.0 40.0 10.0 41.0 49 32.64595974825324 35.0 32.0 40.0 10.0 41.0 50 32.45775920870374 35.0 32.0 40.0 10.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 2.0 11 1.0 12 4.0 13 9.0 14 18.0 15 39.0 16 139.0 17 314.0 18 774.0 19 1508.0 20 2858.0 21 4705.0 22 7431.0 23 11489.0 24 18355.0 25 31109.0 26 49946.0 27 61846.0 28 60025.0 29 52076.0 30 48582.0 31 49453.0 32 56341.0 33 72295.0 34 137133.0 35 264906.0 36 101553.0 37 123713.0 38 211235.0 39 492580.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.29808523892991 22.012146582450075 25.66563519079616 22.024132987823855 2 38.29645766783252 24.598146353472107 26.522636299673035 10.58275967902234 3 24.812396630691325 24.288058583959394 40.79871385332832 10.100830932020957 4 22.0384306731576 25.66026012112182 40.18665466951115 12.114654536209425 5 19.888994061085516 28.124783317503756 40.568123364299105 11.41809925711162 6 16.92061183343089 39.08014282635139 36.59428060336232 7.404964736855401 7 76.5064304646049 3.5436221842025626 18.460999300703435 1.4889480504891044 8 76.64139846412759 2.8986138232816843 18.36199051730208 2.097997195288644 9 73.16711467872402 4.026840947925788 20.160327578246235 2.6457167951039566 10 40.33699536830247 23.977809562356452 26.187554456174638 9.497640613166448 11 34.68150830905146 18.820268957736364 34.00747457188914 12.490748161323042 12 31.724252475622716 19.394003894775487 36.80691835967924 12.074825269922561 13 18.16047915521105 32.59076745782317 36.12084446644639 13.127908920519381 14 12.344546266180975 34.92634273271767 39.60899593160976 13.12011506949159 15 11.092423785543321 22.615874408272017 54.500411461583575 11.791290344601093 16 13.705191403543568 18.63746283811204 51.12734023814783 16.530005520196557 17 12.727143725600543 20.136408518195417 39.84684276469934 27.289604991504703 18 16.028834023761032 23.357902776814747 44.429895922525894 16.183367276898327 19 19.798854142646825 23.31678349380604 39.327019776493856 17.557342587053284 20 22.09820144793627 21.258830567591232 39.84786402793746 16.795103956535037 21 17.0065591975236 24.292412390395608 41.97144655487597 16.729581857204824 22 19.226301720936057 21.221258830567592 37.05497782515006 22.497461623346293 23 14.135626983064768 25.087062691050132 37.75943445666915 23.017875869215953 24 13.166018164510456 22.36770744140771 49.61474188109163 14.8515325129902 25 13.36629326057639 24.13492284893743 45.16810799159984 17.330675898886337 26 13.517923976089541 27.749442202144547 40.108447405749494 18.624186416016418 27 13.543670559829632 31.819444959555288 37.16753178413075 17.46935269648433 28 12.882859494066192 27.86548995641356 41.8928630362371 17.35878751328314 29 13.224767676051 23.662722978046602 41.8195470858791 21.292962260023295 30 15.62059748199486 29.813791461271816 38.745114733549734 15.820496323183589 31 20.691008207193885 28.17966277887877 35.44277942702832 15.686549586899021 32 21.108812372980385 25.08926646961661 36.80982089730338 16.992100260099622 33 20.763087891526794 29.64958308272071 32.106204926681364 17.481124099071135 34 17.080896411119728 27.97148633039156 34.63748648841861 20.310130770070106 35 17.202856742030516 27.493212630768728 34.27483053749084 21.029100089709914 36 23.86240681644836 27.91612311274585 32.38087098704017 15.840599083765625 37 17.04697972147464 31.07521281244608 36.06720127109648 15.810606194982801 38 16.37004344668818 28.84773018870257 34.09524945967112 20.68697690493813 39 16.46254839578358 29.924840400743697 34.715048743819345 18.897562459653383 40 19.027800397862656 25.87311288022571 33.92819229419261 21.17089442771902 41 13.71024396903745 27.485257527650703 35.74996465891689 23.05453384439496 42 17.598408119365246 26.97951722199199 33.526835841609596 21.895238817033167 43 17.58599170841752 25.56893768735477 35.02239522779814 21.82267537642957 44 16.568921024638783 28.570591596293564 33.41256186033311 21.447925518734536 45 15.40425092760265 34.49477838856486 30.28545382519521 19.81551685863728 46 21.448516776398712 29.681295993799317 32.738528123170795 16.13165910663117 47 17.69247183866621 30.305610336473986 33.14520589473141 18.856711930128395 48 17.127014508925573 28.39267679007289 34.665705604208895 19.814603096792645 49 20.011061893389794 24.926455609180834 35.908045458039254 19.154437039390125 50 18.566565669107487 28.65331391858167 32.33319411902877 20.44692629328208 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 4552.0 1 7433.0 2 10314.0 3 35687.5 4 61061.0 5 44329.0 6 27597.0 7 28136.5 8 28676.0 9 30167.5 10 31659.0 11 31226.0 12 30793.0 13 29868.0 14 28943.0 15 25941.0 16 22939.0 17 20857.0 18 18775.0 19 17256.5 20 15738.0 21 15797.0 22 15856.0 23 17622.5 24 19389.0 25 22003.0 26 24617.0 27 27293.0 28 29969.0 29 32939.0 30 35909.0 31 54129.0 32 72349.0 33 82016.5 34 91684.0 35 100470.0 36 109256.0 37 98266.5 38 87277.0 39 105373.0 40 123469.0 41 131721.5 42 139974.0 43 140444.0 44 140914.0 45 137447.5 46 133981.0 47 127262.0 48 120543.0 49 112083.5 50 103624.0 51 87650.5 52 71677.0 53 62756.5 54 53836.0 55 47015.0 56 40194.0 57 39021.5 58 37849.0 59 37271.0 60 36693.0 61 33046.5 62 29400.0 63 25741.0 64 22082.0 65 17595.0 66 13108.0 67 10952.5 68 8797.0 69 7408.0 70 6019.0 71 5601.5 72 5184.0 73 4061.5 74 2939.0 75 2153.0 76 1367.0 77 1079.0 78 791.0 79 546.0 80 301.0 81 276.5 82 252.0 83 158.5 84 65.0 85 41.0 86 17.0 87 11.5 88 6.0 89 4.5 90 3.0 91 2.0 92 1.0 93 1.5 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1860441.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.54160736448651 #Duplication Level Percentage of deduplicated Percentage of total 1 78.96493787176273 17.799966250663466 2 8.564865791419669 3.8613168359940837 3 3.3972309652887693 2.297371396380448 4 1.793414187060749 1.6170575378649268 5 1.1292816060857567 1.2727911284160924 6 0.7426774974771077 1.0044686727941028 7 0.5663033713227216 0.8935771771879261 8 0.4242827277742186 0.7651211728815801 9 0.3308673599066078 0.6712453905065099 >10 2.7488771266223186 13.645816588267126 >50 0.7134202391532277 11.556539285433901 >100 0.5261109285654098 22.60844979521387 >500 0.0657938814537223 10.272577392331952 >1k 0.03169632245215819 10.037338271293958 >5k 0.0 0.0 >10k+ 2.4012365494059234E-4 1.6963631047700722 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 31340 1.6845468359383609 No Hit TGAAAGGGGACACTTGCATCTGTTTTTCTTTTCAGCCTGGTTAAAATAGC 4320 0.23220300993151624 No Hit GGTGTTGGGTTAACAGAGAAGTTATAGGTGGATTATTTATAGTGTGATTA 2689 0.14453562354302016 No Hit TTTACAGGGTGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAA 2423 0.13023793820927404 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2402 0.1291091735776625 No Hit AGAGGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAATTG 2139 0.11497274033414659 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGAGCAATCTCGTATGC 2120 0.11395147709602185 No Hit AATTGAGGTTTCCTCCTATGGTTTTCAAAACAATCACCATCATGCTATTA 2097 0.11271521107092351 No Hit GATATAGGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAA 2017 0.10841515533145099 No Hit ATATGAGGGGTTTGTGTGGATTTTGCTTATTAGATTTGTTTAGGGGGAAA 1970 0.10588887258451088 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 1968 0.10578137119102407 No Hit GACTTAGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 1941 0.10433010237895209 No Hit AATGATGGGTATCCCAATAGGAGGTTTCCTCCTATGGTTTTCAAAACAAT 1884 0.10126631266457792 No Hit AGGAGAGGGCTCTTTCTAGGATTACCAGGGGTTTTAGGTTGTGTTTGGGA 1881 0.10110506057434769 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.08702237802757518 0.0 2 0.0 0.0 0.0 0.3405644145662238 0.0 3 0.0 0.0 0.0 0.49805395602440494 0.0 4 0.0 0.0 0.0 0.7844914189700184 0.0 5 0.0 0.0 0.0 1.3651064451922958 0.0 6 0.0 0.0 0.0 1.8522490097777893 0.0 7 0.0 0.0 0.0 2.1599717486337915 0.0 8 0.0 0.0 0.0 2.889314952745075 0.0 9 0.0 0.0 0.0 3.1703235953196045 0.0 10 5.375069674340654E-5 0.0 0.0 3.69584415737989 0.0 11 5.375069674340654E-5 0.0 0.0 4.308924604435185 0.0 12 5.375069674340654E-5 0.0 0.0 4.815041164971101 0.0 13 5.375069674340654E-5 0.0 0.0 4.993708480946184 0.0 14 5.375069674340654E-5 0.0 0.0 5.05423176547926 0.0 15 5.375069674340654E-5 0.0 0.0 5.16485069937719 0.0 16 5.375069674340654E-5 0.0 0.0 5.428121612026396 0.0 17 5.375069674340654E-5 0.0 0.0 5.7349843397345035 0.0 18 5.375069674340654E-5 0.0 0.0 6.2126130309964145 0.0 19 5.375069674340654E-5 0.0 0.0 6.431915873709513 0.0 20 5.375069674340654E-5 0.0 0.0 6.68164161077938 0.0 21 5.375069674340654E-5 0.0 0.0 6.995760682547847 0.0 22 5.375069674340654E-5 0.0 0.0 7.306385959027994 0.0 23 5.375069674340654E-5 0.0 0.0 7.669525666226448 0.0 24 5.375069674340654E-5 0.0 0.0 7.950534308800978 0.0 25 5.375069674340654E-5 0.0 0.0 8.167310868767137 0.0 26 5.375069674340654E-5 0.0 0.0 8.393708803450364 0.0 27 5.375069674340654E-5 0.0 0.0 8.613979158704845 0.0 28 5.375069674340654E-5 0.0 0.0 8.8625761311431 0.0 29 5.375069674340654E-5 0.0 0.0 9.12181574153655 0.0 30 5.375069674340654E-5 0.0 0.0 9.471840278729614 0.0 31 5.375069674340654E-5 0.0 0.0 9.822026068012907 0.0 32 5.375069674340654E-5 0.0 0.0 10.107764771900856 0.0 33 5.375069674340654E-5 0.0 0.0 10.372056947788186 0.0 34 5.375069674340654E-5 0.0 0.0 10.647421767204657 0.0 35 5.375069674340654E-5 0.0 0.0 11.016312798954656 0.0 36 5.375069674340654E-5 0.0 0.0 11.299417718702179 0.0 37 5.375069674340654E-5 0.0 0.0 11.60128163161315 0.0 38 5.375069674340654E-5 0.0 0.0 11.867078827009296 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACGTCC 20 7.857738E-4 44.000004 33 GTCGACC 20 7.857738E-4 44.000004 13 ACCGAGT 20 7.857738E-4 44.000004 33 GTGTCGC 20 7.857738E-4 44.000004 29 CGTAATC 20 7.857738E-4 44.000004 34 CGTCGTA 20 7.857738E-4 44.000004 31 ATAACCG 20 7.857738E-4 44.000004 10 ACTCCCG 20 7.857738E-4 44.000004 10 GGCGAAT 20 7.857738E-4 44.000004 10 TCACGAT 120 0.0 44.0 38 GTCATCG 60 0.0 44.0 43 CTAGACG 30 2.5285644E-6 44.0 1 GACCGTA 25 4.4439053E-5 44.0 44 GACCGGA 25 4.4439053E-5 44.0 1 GCAAACG 70 0.0 44.0 1 CGTTACC 50 2.7284841E-11 44.0 34 TACGCTA 25 4.4439053E-5 44.0 12 CTACGTT 55 1.8189894E-12 44.0 27 TCACTAC 30 2.5285644E-6 44.0 27 ACGTCAT 25 4.4439053E-5 44.0 15 >>END_MODULE