##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546230_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1640962 Sequences flagged as poor quality 0 Sequence length 50 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.815209614847877 31.0 31.0 34.0 30.0 34.0 2 32.208661748413434 33.0 31.0 34.0 30.0 34.0 3 32.201815764167605 33.0 31.0 34.0 30.0 34.0 4 35.93579010360995 37.0 35.0 37.0 35.0 37.0 5 35.844423575926804 37.0 35.0 37.0 35.0 37.0 6 35.9258544682936 37.0 35.0 37.0 35.0 37.0 7 36.16227980903884 37.0 35.0 37.0 35.0 37.0 8 36.06800157468607 37.0 35.0 37.0 35.0 37.0 9 37.836829859557994 39.0 38.0 39.0 35.0 39.0 10 37.416066307446485 39.0 37.0 39.0 34.0 39.0 11 37.2510137346264 39.0 37.0 39.0 34.0 39.0 12 36.64011598074788 39.0 35.0 39.0 33.0 39.0 13 36.330609727708506 39.0 35.0 39.0 32.0 39.0 14 37.28424911728608 40.0 35.0 41.0 32.0 41.0 15 37.59533554098145 40.0 35.0 41.0 33.0 41.0 16 37.72931061170216 40.0 35.0 41.0 33.0 41.0 17 37.66555898308431 40.0 35.0 41.0 33.0 41.0 18 37.436875442575754 39.0 35.0 41.0 33.0 41.0 19 37.14692479167708 37.0 35.0 41.0 33.0 41.0 20 36.80352013026505 37.0 35.0 41.0 33.0 41.0 21 36.69580953123838 37.0 35.0 41.0 33.0 41.0 22 36.63780331293473 37.0 35.0 41.0 32.0 41.0 23 36.61149130814729 37.0 35.0 41.0 32.0 41.0 24 36.53512147142956 37.0 35.0 40.0 32.0 41.0 25 36.49911698138043 37.0 35.0 40.0 32.0 41.0 26 36.4677414833494 37.0 35.0 40.0 32.0 41.0 27 36.3922814787911 37.0 35.0 41.0 32.0 41.0 28 36.300155031012295 37.0 35.0 40.0 32.0 41.0 29 36.168955771065995 37.0 35.0 40.0 31.0 41.0 30 35.9030117699252 36.0 35.0 40.0 31.0 41.0 31 35.49996831127107 36.0 35.0 40.0 29.0 41.0 32 35.04683228496455 36.0 35.0 40.0 25.0 41.0 33 34.529625305156365 36.0 34.0 40.0 22.0 41.0 34 34.03831532966638 36.0 34.0 40.0 18.0 41.0 35 33.72537633412596 36.0 34.0 40.0 16.0 41.0 36 33.54950876376174 36.0 33.0 40.0 15.0 41.0 37 33.438411736530156 36.0 33.0 40.0 15.0 41.0 38 33.37118714510147 36.0 33.0 40.0 15.0 41.0 39 33.3128634301099 36.0 33.0 40.0 15.0 41.0 40 33.1851749156897 36.0 33.0 40.0 12.0 41.0 41 33.08666623602497 36.0 33.0 40.0 11.0 41.0 42 32.98221104449707 36.0 33.0 40.0 10.0 41.0 43 32.89322299967946 35.0 33.0 40.0 10.0 41.0 44 32.7364923745949 35.0 32.0 40.0 10.0 41.0 45 32.711797713780086 35.0 32.0 40.0 10.0 41.0 46 32.65944549599564 35.0 32.0 40.0 10.0 41.0 47 32.609652143072175 35.0 32.0 40.0 10.0 41.0 48 32.56877368275438 35.0 32.0 40.0 10.0 41.0 49 32.48869687415065 35.0 32.0 40.0 10.0 41.0 50 32.31561486493898 35.0 31.0 40.0 10.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 3.0 10 3.0 11 2.0 12 4.0 13 7.0 14 15.0 15 44.0 16 116.0 17 328.0 18 780.0 19 1549.0 20 2872.0 21 4695.0 22 7435.0 23 11536.0 24 17777.0 25 29923.0 26 47055.0 27 57336.0 28 54293.0 29 46282.0 30 43295.0 31 44977.0 32 51648.0 33 66730.0 34 126554.0 35 217251.0 36 87879.0 37 107762.0 38 184102.0 39 428708.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 24.596547634862965 23.22271935608503 27.89570995550171 24.285023053550294 2 37.84176598848724 24.59094116743715 27.205992582399833 10.361300261675774 3 23.461847379768695 23.69299228135691 41.30272364625141 11.542436692622985 4 22.126715914201547 24.19611179296047 41.94356724896737 11.733605043870607 5 18.678494687872114 27.412700598795098 42.33175417834173 11.57705053499106 6 18.045268568071656 36.066892469173574 38.05621336752466 7.831625595230116 7 76.45972301613322 3.0955622372730143 19.02122047920671 1.4234942673870572 8 76.93145849812488 2.3598962072247867 18.766187151195457 1.9424581434548758 9 73.86856002759356 3.366318050021878 20.196445743411488 2.5686761789730657 10 40.47528218203712 21.047714694185483 28.204187543648178 10.272815580129217 11 34.993558656446645 19.217385899246906 33.59255119862617 12.196504245680277 12 33.64873775261097 17.9352721147717 36.41522472793398 12.00076540468335 13 19.25827654753736 29.939084512621257 36.614741840457 14.187897099384386 14 12.319115250688316 33.001312644656 39.27068390371014 15.408888200945542 15 12.874582104887256 22.0985007574825 51.839469774437184 13.187447363193053 16 15.011864991389197 18.733645264180403 49.187976321206705 17.066513423223697 17 14.989926640592529 18.86448315073719 39.6107892809218 26.53480092774848 18 16.69313488063709 23.03892472829962 44.151479437061916 16.116460954001372 19 20.205830482363393 24.14163155514875 37.54925464453168 18.103283317956176 20 20.163477277353163 22.350426152464227 40.2428575433191 17.24323902686351 21 17.010875328008815 24.791372377910033 41.79140041024716 16.406351883833995 22 18.02515841317471 20.50864066322072 39.32674857796829 22.13945234563628 23 14.760427115314064 25.17498881753508 38.10246672378763 21.96211734336322 24 14.417518504389498 22.530503448586867 48.21756993763414 14.834408109389493 25 15.448377232379542 23.757040077710514 43.38004170724246 17.414540982667486 26 13.181414316723972 26.58653887171062 39.432662060425535 20.79938475113988 27 12.887318536321986 30.661770351781453 38.75104968914576 17.6998614227508 28 11.805087503549746 27.082467479441934 43.322575416127854 17.789869600880458 29 14.045724398249321 22.858055213953765 41.64374312141293 21.452477266383987 30 16.19720627290577 26.856075887192997 40.484118462219115 16.462599377682118 31 20.219907590791255 27.369920814741594 36.12716199400108 16.283009600466066 32 21.084827070949846 23.730287477711247 37.36442403906977 17.820461412269147 33 21.584412070480607 25.38352502983006 34.7663748459745 18.265688053714833 34 15.60505362098574 25.212893412522654 36.91212837347849 22.269924593013123 35 16.697095971753154 25.491327648050348 36.04513693796687 21.76643944222962 36 24.18953028772147 25.894993302709018 33.86385547014495 16.051620939424556 37 17.411554929364602 28.71285258281423 36.29182150470273 17.583770983118438 38 17.673474461931477 28.277985718133632 34.31212910475684 19.73641071517805 39 15.841622170409797 27.71398728306932 35.71191776531084 20.732472781210046 40 18.054287667843617 25.240438230745138 35.07466961453099 21.630604486880255 41 14.776515239231621 24.94451425444343 35.91643194662643 24.362538559698518 42 17.573045567173402 25.21356375101922 34.07519491615284 23.138195765654537 43 18.148866335722584 24.605932373814873 34.61347672889439 22.631724561568152 44 16.596423317541785 26.15045320976354 34.238696569451335 23.01442690324334 45 16.87455285375286 31.818591777262363 29.741456535861282 21.5653988331235 46 20.245563273250692 29.305248994187554 32.53493987063686 17.914247861924895 47 17.08369846468108 28.462877263458875 34.27519954758245 20.178224724277587 48 18.09335012023435 26.471545349618093 34.913849315218755 20.521255214928804 49 19.18533153113844 25.119167902730226 35.34902087921597 20.34647968691536 50 17.655740961704172 26.520540999730645 34.39324006284119 21.430477975723996 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3349.0 1 6579.0 2 9809.0 3 33953.0 4 58097.0 5 41100.5 6 24104.0 7 24729.5 8 25355.0 9 26711.5 10 28068.0 11 28138.5 12 28209.0 13 26065.5 14 23922.0 15 21795.5 16 19669.0 17 18523.5 18 17378.0 19 14693.0 20 12008.0 21 11896.0 22 11784.0 23 13326.5 24 14869.0 25 18170.0 26 21471.0 27 22353.5 28 23236.0 29 31315.0 30 39394.0 31 45726.0 32 52058.0 33 57029.5 34 62001.0 35 65015.5 36 68030.0 37 74544.0 38 81058.0 39 88434.5 40 95811.0 41 107598.5 42 119386.0 43 120372.0 44 121358.0 45 120462.0 46 119566.0 47 117003.5 48 114441.0 49 111597.5 50 108754.0 51 93752.5 52 78751.0 53 68743.5 54 58736.0 55 53533.0 56 48330.0 57 43804.0 58 39278.0 59 35975.5 60 32673.0 61 29210.5 62 25748.0 63 22355.0 64 18962.0 65 15903.5 66 12845.0 67 10544.0 68 8243.0 69 6846.0 70 5449.0 71 4443.5 72 3438.0 73 3052.0 74 2666.0 75 2041.5 76 1417.0 77 972.0 78 527.0 79 486.5 80 446.0 81 306.0 82 166.0 83 103.0 84 40.0 85 33.0 86 26.0 87 24.5 88 23.0 89 15.5 90 8.0 91 5.5 92 3.0 93 2.0 94 1.0 95 0.5 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1640962.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.304369499303668 #Duplication Level Percentage of deduplicated Percentage of total 1 79.11662051167666 20.019961989636542 2 8.594254271954092 4.349443713369908 3 3.317413763732844 2.5183519097871474 4 1.7582781171976314 1.7796847664043534 5 1.1198820774796607 1.4168954942096579 6 0.7376105563175982 1.1198862038188466 7 0.5464711676488184 0.9679675842831137 8 0.42047373444275205 0.8511858192873188 9 0.33641254453154085 0.7661436597924356 >10 2.8814323097728023 16.075823388572516 >50 0.7027437494628885 12.453706383627718 >100 0.39861864311510004 20.327678728395462 >500 0.05234141450073875 9.194188856775698 >1k 0.017204816803483573 6.134180715625164 >5k 0.0 0.0 >10k+ 2.423213634293461E-4 2.0249007864141966 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 33023 2.012417106550913 No Hit ATAATGGGGTTTCCCATTGGTAGTTGTCTTCTCTTTGGTCAAGATGAACT 2563 0.15618886969960302 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2336 0.1423555207250381 No Hit ATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCC 2335 0.14229458086171404 No Hit ATGTTATAGGGATTGCCCATATCTGCATTTTTTTCTTTGAATATTTACAC 2290 0.1395522870121307 No Hit CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2231 0.13595683507601028 No Hit TGTATTGGGTAAAATATTTTGGCTATATAGTTTTAGTATTCATCTTAGAG 2226 0.13565213575938992 No Hit TAAGCTAGGGGTTTTTAACTGAACTATTTGGATTTTGTTTCTCTTCTAGG 2164 0.13187386423329728 No Hit GTAGAAGGGGGTGAAGTAAAATGGTGAAGCTTATGAATTTGTGGAGTGAG 2072 0.12626739680748245 No Hit AGGAACGGGGGAAGGACTGTAATCATAATAAGCTCACTACTTGGCTATTG 2008 0.12236724555474167 No Hit TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1832 0.11164182960970453 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGC 1769 0.10780261822028786 No Hit TAATGGGGTCAAAACAATCACCATCATGCTATTAATGATATTAAAATCCC 1695 0.10329306833430633 No Hit AAAAAAGGGGGGGTGAAAACAAGAAAGAATAGGATGGAATCTGGAATAAA 1655 0.10085547380134337 No Hit AAAATAGGGATACTAAATAACTCTATAACCATCAACTCAATCTCACTTCT 1647 0.10036795489475075 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04351106241338922 0.0 2 0.0 0.0 0.0 0.2244415166225665 0.0 3 0.0 0.0 0.0 0.371184707506938 0.0 4 0.0 0.0 0.0 0.6631475926925791 0.0 5 0.0 0.0 0.0 1.2689507739972041 0.0 6 0.0 0.0 0.0 1.827403681499023 0.0 7 0.0 0.0 0.0 2.1899349284139427 0.0 8 0.0 0.0 0.0 2.9426641201929113 0.0 9 0.0 0.0 0.0 3.283378896037812 0.0 10 0.0 0.0 0.0 3.8704735393019463 0.0 11 0.0 0.0 0.0 4.648005255453813 0.0 12 0.0 0.0 0.0 5.230102829925373 0.0 13 0.0 0.0 0.0 5.440528177983403 0.0 14 0.0 0.0 0.0 5.519689060441375 0.0 15 0.0 0.0 0.0 5.631148070461108 0.0 16 0.0 0.0 0.0 5.90592591418936 0.0 17 0.0 0.0 0.0 6.223910121014381 0.0 18 0.0 0.0 0.0 6.728492189337718 0.0 19 0.0 0.0 0.0 6.965792017121664 0.0 20 0.0 0.0 0.0 7.259034639437111 0.0 21 0.0 0.0 0.0 7.6291833692675395 0.0 22 0.0 0.0 0.0 7.983609614360357 0.0 23 0.0 0.0 0.0 8.372345002504629 0.0 24 0.0 0.0 0.0 8.666136083589992 0.0 25 0.0 0.0 0.0 8.919280275838197 0.0 26 0.0 0.0 0.0 9.194850337789662 0.0 27 0.0 0.0 0.0 9.549825041652397 0.0 28 0.0 0.0 0.0 9.840386309981584 0.0 29 0.0 0.0 0.0 10.219127560540707 0.0 30 0.0 0.0 0.0 10.610239603354618 0.0 31 0.0 0.0 0.0 10.967834721340287 0.0 32 0.0 0.0 0.0 11.287464304475058 0.0 33 0.0 0.0 0.0 11.611664377359135 0.0 34 0.0 0.0 0.0 11.946407046598276 0.0 35 0.0 0.0 0.0 12.351352438386751 0.0 36 0.0 0.0 0.0 12.662694200109447 0.0 37 0.0 0.0 0.0 12.98713803244682 0.0 38 0.0 0.0 0.0 13.391169326285436 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTCGTA 30 2.5283825E-6 44.0 31 CTAGACG 40 8.3164196E-9 44.0 1 AATCCGG 35 1.4465877E-7 44.0 2 ATTAGCG 50 2.7284841E-11 44.0 1 CGCATCG 25 4.4436747E-5 44.0 21 ATAGACG 60 0.0 44.0 1 CGATTCG 30 2.5283825E-6 44.0 10 CACGACG 115 0.0 44.0 26 CTGCGTA 25 4.4436747E-5 44.0 19 ACGATTC 20 7.8574684E-4 44.0 17 CCGTAGG 20 7.8574684E-4 44.0 2 TACGATG 40 8.3164196E-9 44.0 1 CATACGA 190 0.0 44.0 18 ATGCGTC 20 7.8574684E-4 44.0 11 CATCGGC 20 7.8574684E-4 44.0 28 GCGTGTA 30 2.5283825E-6 44.0 14 ACCGTAT 20 7.8574684E-4 44.0 35 ATCGGTT 160 0.0 44.0 2 ATCGGCC 20 7.8574684E-4 44.0 29 GTAGTAT 30 2.5283825E-6 44.0 15 >>END_MODULE