##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546226_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 858891 Sequences flagged as poor quality 0 Sequence length 50 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.96282182488814 33.0 31.0 34.0 30.0 34.0 2 32.352689689378515 33.0 31.0 34.0 31.0 34.0 3 32.37798859226607 34.0 31.0 34.0 31.0 34.0 4 36.07505026831111 37.0 35.0 37.0 35.0 37.0 5 36.001128199038064 37.0 35.0 37.0 35.0 37.0 6 36.07909967621037 37.0 35.0 37.0 35.0 37.0 7 36.25642136196561 37.0 36.0 37.0 35.0 37.0 8 36.17841844890679 37.0 37.0 37.0 35.0 37.0 9 37.95173543557914 39.0 39.0 39.0 35.0 39.0 10 37.61248982699784 39.0 37.0 39.0 35.0 39.0 11 37.45097806357268 39.0 37.0 39.0 35.0 39.0 12 37.09142370801417 39.0 35.0 39.0 34.0 39.0 13 36.96151548915986 39.0 35.0 39.0 33.0 39.0 14 38.12283747297387 40.0 37.0 41.0 33.0 41.0 15 38.271054184989715 40.0 37.0 41.0 33.0 41.0 16 38.35440934879979 40.0 37.0 41.0 34.0 41.0 17 38.28292297858518 40.0 36.0 41.0 34.0 41.0 18 38.086700174993105 39.0 36.0 41.0 34.0 41.0 19 37.855971246642476 39.0 36.0 41.0 34.0 41.0 20 37.57302148933916 39.0 35.0 41.0 34.0 41.0 21 37.46858914577054 39.0 35.0 41.0 33.0 41.0 22 37.41486754431005 39.0 35.0 41.0 33.0 41.0 23 37.34021546389472 39.0 35.0 41.0 33.0 41.0 24 37.29329332825702 39.0 35.0 41.0 33.0 41.0 25 37.272573586171006 39.0 35.0 41.0 33.0 41.0 26 37.23633383048606 39.0 35.0 41.0 33.0 41.0 27 37.162253417488365 39.0 35.0 41.0 33.0 41.0 28 37.08416783969095 39.0 35.0 41.0 33.0 41.0 29 36.9569887215025 39.0 35.0 41.0 33.0 41.0 30 36.74681653434487 39.0 35.0 41.0 32.0 41.0 31 36.42307929644157 39.0 35.0 41.0 31.0 41.0 32 36.069384822986855 39.0 35.0 41.0 30.0 41.0 33 35.62315939973757 39.0 35.0 41.0 27.0 41.0 34 35.195765236799545 39.0 35.0 41.0 23.0 41.0 35 34.90434641881217 38.0 35.0 41.0 21.0 41.0 36 34.70077809640571 38.0 35.0 41.0 20.0 41.0 37 34.58797099981255 38.0 34.0 41.0 18.0 41.0 38 34.526436998408414 38.0 34.0 41.0 18.0 41.0 39 34.43297577923159 38.0 34.0 41.0 18.0 41.0 40 34.33527304396018 38.0 34.0 41.0 18.0 41.0 41 34.2388347299017 38.0 34.0 41.0 18.0 41.0 42 34.16809350662657 38.0 34.0 41.0 17.0 41.0 43 34.08085426439443 38.0 34.0 41.0 16.0 41.0 44 33.93578463390582 38.0 34.0 40.0 15.0 41.0 45 33.8848224047056 38.0 34.0 40.0 15.0 41.0 46 33.81785115922742 37.0 34.0 40.0 15.0 41.0 47 33.79466311790437 37.0 33.0 40.0 17.0 41.0 48 33.74792377612526 37.0 33.0 40.0 17.0 41.0 49 33.631053300127725 37.0 33.0 40.0 16.0 41.0 50 33.52466727442714 37.0 33.0 40.0 15.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 2.0 13 6.0 14 10.0 15 13.0 16 45.0 17 89.0 18 219.0 19 501.0 20 867.0 21 1603.0 22 2570.0 23 4073.0 24 6741.0 25 11929.0 26 19453.0 27 24454.0 28 23826.0 29 20674.0 30 18607.0 31 19276.0 32 21996.0 33 28788.0 34 53769.0 35 92193.0 36 49715.0 37 64171.0 38 114332.0 39 278968.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.46871954648494 21.61845915255836 26.43245766925023 20.48036363170647 2 39.08621699377453 22.20677594712251 27.85580475287318 10.851202306229778 3 25.99247168732703 23.51392667986974 39.84091112842025 10.652690504382978 4 22.925377026887 25.24243472105308 39.77221789493661 12.059970357123314 5 20.524024585191835 29.108583044879964 38.82343626839727 11.543956101530927 6 18.178907451585825 38.11310166249268 35.0080510798227 8.699939806098794 7 78.05006688858074 3.424765191392156 17.182389849235815 1.3427780707912877 8 78.75749076425296 2.58007127796193 17.19216990281654 1.4702680549685583 9 74.8540850934519 4.058023660743912 18.47987695761162 2.6080142881925648 10 36.42802171637612 28.483008903341634 26.057439186113257 9.031530194168992 11 30.265074380800357 21.34764481173979 35.74877370935311 12.638507098106743 12 29.872242228641355 20.24203304028101 37.277605656596705 12.60811907448093 13 19.423419269732715 28.33805453777022 36.84623543616129 15.392290756335786 14 14.610352186715195 30.18427250955011 38.89154735583445 16.313827947900258 15 13.232412494717025 24.623613473653815 48.24488788449291 13.89908614713625 16 16.17958506958392 21.125148592778363 44.17801560384263 18.51725073379509 17 15.530725086186722 23.355466526020184 38.544122595300216 22.569685792492876 18 17.284032548949753 25.343611703929835 41.78399820233301 15.588357544787407 19 19.27555417392894 25.329058052768044 37.20041309083458 18.19497468246844 20 20.560234069282366 23.381779527320695 40.26843918494896 15.789547218447975 21 18.610277672021247 25.928435622215158 39.84114398683884 15.620142718924754 22 20.549639011236582 21.582948243723592 37.42325859742389 20.444154147615937 23 16.138136271075144 25.555396435636187 37.511279079650386 20.795188213638287 24 14.759847291449091 23.813499035384 45.76517858494268 15.661475088224233 25 15.754502026450387 26.32790423930394 40.816238614678696 17.10135511956698 26 15.456093963029069 25.73702600213531 38.83356560960588 19.973314425229745 27 14.012371767779614 29.783988887996266 39.4715976765387 16.732041667685422 28 13.884648925183754 26.25338954535558 42.231784941278924 17.630176588181737 29 14.69639337238369 24.16185522959258 39.982139759294256 21.159611638729476 30 16.61235244053087 28.924275606567072 38.29845696368922 16.164914989212832 31 18.872476251352037 30.225372020430996 36.08211053556272 14.820041192654248 32 20.142718924752966 25.263624837144643 35.75541017428288 18.838246063819508 33 20.21502146372473 29.51946172447959 33.957510324360136 16.30800648743554 34 17.12871598375114 26.431642664785173 36.567503909110705 19.872137442352987 35 19.830805073053508 27.12812219478374 34.61999252524476 18.421080206917992 36 22.501574705055706 29.799124685204525 32.65070887924079 15.04859173049898 37 17.818093331982755 30.60679411007916 35.94670336515344 15.628409192784648 38 17.806799698681207 28.865013139036265 36.11855287807184 17.209634284210686 39 17.06991923305751 29.753251576742567 35.17419556148568 18.002633628714236 40 18.775840007637758 27.105069211343462 34.91059983164336 19.208490949375413 41 15.764980655286875 27.94871526189004 35.4603785579311 20.825925524891982 42 16.936607788415525 28.060370873603286 33.023398778191876 21.97962255978931 43 17.449944172194144 28.40430275785868 33.6900724306111 20.455680639336073 44 16.85813450135116 27.450165387691804 34.386551960609665 21.305148150347367 45 16.4480708262166 33.88427635171401 31.341113133098382 18.32653968897101 46 18.99135047404153 30.737893399744554 33.68285381963486 16.587902306579068 47 17.342945728852673 30.011957279794526 35.05974564874938 17.585351342603428 48 17.529698180560747 27.50977714285049 36.39053151098335 18.569993165605414 49 18.252723570278416 28.30417363786557 36.02971739138028 17.413385400475732 50 17.003554583759755 28.661494881189814 35.8757979766932 18.459152558357232 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1400.0 1 3430.5 2 5461.0 3 17293.0 4 29125.0 5 20647.5 6 12170.0 7 12001.5 8 11833.0 9 12096.0 10 12359.0 11 11907.5 12 11456.0 13 11218.5 14 10981.0 15 10003.0 16 9025.0 17 8648.5 18 8272.0 19 7925.5 20 7579.0 21 8268.0 22 8957.0 23 10047.0 24 11137.0 25 11564.0 26 11991.0 27 16662.5 28 21334.0 29 22648.5 30 23963.0 31 31741.0 32 39519.0 33 44804.0 34 50089.0 35 52361.0 36 54633.0 37 54576.0 38 54519.0 39 54296.5 40 54074.0 41 57061.0 42 60048.0 43 54901.5 44 49755.0 45 46744.5 46 43734.0 47 43376.5 48 43019.0 49 41991.0 50 40963.0 51 36502.5 52 32042.0 53 28078.5 54 24115.0 55 22724.0 56 21333.0 57 20474.5 58 19616.0 59 18698.5 60 17781.0 61 16783.5 62 15786.0 63 14262.0 64 12738.0 65 11149.0 66 9560.0 67 8050.5 68 6541.0 69 5478.0 70 4415.0 71 3751.0 72 3087.0 73 2710.0 74 2333.0 75 1685.5 76 1038.0 77 787.5 78 537.0 79 411.5 80 286.0 81 217.5 82 149.0 83 118.5 84 88.0 85 53.5 86 19.0 87 16.0 88 13.0 89 11.0 90 9.0 91 7.0 92 5.0 93 4.0 94 3.0 95 1.5 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 858891.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.217976128495135 #Duplication Level Percentage of deduplicated Percentage of total 1 78.21176893179822 21.287660597530614 2 7.86088262549294 4.27914631299138 3 3.059009858749618 2.497801719368352 4 1.710966966289467 1.862762321804418 5 1.1405108410677176 1.5521198423235523 6 0.8382422131072653 1.3689153927750286 7 0.6620446122688698 1.2613660116913041 8 0.5299751085880482 1.153987988339689 9 0.448962241593324 1.0997859216854482 >10 4.655803829776375 26.36650614995893 >50 0.43232989323957643 8.230574358466072 >100 0.4331885424363515 24.565871883236678 >500 0.015455686350553674 2.580124679785118 >1k 4.293246208487132E-4 0.11872312838141667 >5k 0.0 0.0 >10k+ 4.293246208487132E-4 1.7746536916619833 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 15187 1.7682104015527 No Hit TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1016 0.11829207664301988 No Hit GGCTAAGGGATTAATCTATTTTGTTGATTTTCTCAAAGAACTGTTTATTA 959 0.11165561171324416 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGC 897 0.1044370007369969 No Hit CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 887 0.10327270864405379 No Hit ATAACAGGGACATATTTAATTTCTACTCTATCCATGCATTTTCTTCTTTT 886 0.10315627943475948 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04226380297383486 0.0 2 0.0 0.0 0.0 0.15927515831461733 0.0 3 0.0 0.0 0.0 0.22831767942614373 0.0 4 0.0 0.0 0.0 0.3251867815590104 0.0 5 0.0 0.0 0.0 0.5685238289841202 0.0 6 0.0 0.0 0.0 0.7681999229238634 0.0 7 0.0 0.0 0.0 0.9004635046822006 0.0 8 0.0 0.0 0.0 1.215520945032606 0.0 9 0.0 0.0 0.0 1.3568660051158994 0.0 10 0.0 0.0 0.0 1.6569040774673387 0.0 11 0.0 0.0 0.0 2.1120258565988 0.0 12 0.0 0.0 0.0 2.415556805229069 0.0 13 0.0 0.0 0.0 2.5282602798259615 0.0 14 0.0 0.0 0.0 2.5821670037292277 0.0 15 0.0 0.0 0.0 2.656099551631115 0.0 16 0.0 0.0 0.0 2.829579073479638 0.0 17 0.0 0.0 0.0 3.02192012723384 0.0 18 0.0 0.0 0.0 3.288310158099223 0.0 19 0.0 0.0 0.0 3.4486331792974894 0.0 20 0.0 0.0 0.0 3.6152433777976483 0.0 21 0.0 0.0 0.0 3.8287745476434147 0.0 22 0.0 0.0 0.0 4.060002957301916 0.0 23 0.0 0.0 0.0 4.3008949913318455 0.0 24 0.0 0.0 0.0 4.503831103131829 0.0 25 0.0 0.0 0.0 4.671372735306343 0.0 26 0.0 0.0 0.0 4.853235160224056 0.0 27 0.0 0.0 0.0 5.078642109417842 0.0 28 0.0 0.0 0.0 5.26411383982368 0.0 29 1.1642920929431092E-4 0.0 0.0 5.486377200366519 0.0 30 1.1642920929431092E-4 0.0 0.0 5.738795726116585 0.0 31 1.1642920929431092E-4 0.0 0.0 5.95686763512483 0.0 32 1.1642920929431092E-4 0.0 0.0 6.145017237344436 0.0 33 1.1642920929431092E-4 0.0 0.0 6.367746314724453 0.0 34 1.1642920929431092E-4 0.0 0.0 6.599207582801543 0.0 35 1.1642920929431092E-4 0.0 0.0 6.872234078596702 0.0 36 1.1642920929431092E-4 0.0 0.0 7.09391529309307 0.0 37 1.1642920929431092E-4 0.0 0.0 7.309192901078251 0.0 38 1.1642920929431092E-4 0.0 0.0 7.56522073231644 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTATGA 20 7.855368E-4 44.000004 15 TACCAAC 20 7.855368E-4 44.000004 44 ATAGACG 40 8.309144E-9 44.000004 1 TACGGAC 40 8.309144E-9 44.000004 4 ATGTCGA 20 7.855368E-4 44.000004 37 TCGATAT 20 7.855368E-4 44.000004 30 TCGATAG 20 7.855368E-4 44.000004 1 ACGATAT 20 7.855368E-4 44.000004 25 CCGTACA 30 2.5269655E-6 44.000004 41 ATGCGAG 20 7.855368E-4 44.000004 1 CGGTCTA 30 2.5269655E-6 44.000004 31 ACGTAAC 40 8.309144E-9 44.000004 16 CACGTAT 40 8.309144E-9 44.000004 44 CGACTCA 20 7.855368E-4 44.000004 21 ATACGAG 20 7.855368E-4 44.000004 1 GACGACT 20 7.855368E-4 44.000004 19 GATTCGC 40 8.309144E-9 44.000004 9 TGTACGA 20 7.855368E-4 44.000004 22 TGGTCGA 30 2.5269655E-6 44.000004 6 AATGTCG 20 7.855368E-4 44.000004 36 >>END_MODULE