##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546223_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1392194 Sequences flagged as poor quality 0 Sequence length 50 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.93707701656522 33.0 31.0 34.0 30.0 34.0 2 32.3028112461338 33.0 31.0 34.0 30.0 34.0 3 32.17041374980786 33.0 31.0 34.0 30.0 34.0 4 35.942695486404915 37.0 35.0 37.0 35.0 37.0 5 35.922382225465704 37.0 35.0 37.0 35.0 37.0 6 35.988489391564684 37.0 35.0 37.0 35.0 37.0 7 36.226098517878974 37.0 35.0 37.0 35.0 37.0 8 36.136960797130286 37.0 36.0 37.0 35.0 37.0 9 37.90838489463394 39.0 39.0 39.0 35.0 39.0 10 37.58524674003767 39.0 37.0 39.0 35.0 39.0 11 37.36793363568583 39.0 37.0 39.0 35.0 39.0 12 36.67853546273005 39.0 35.0 39.0 33.0 39.0 13 36.403045839875766 39.0 35.0 39.0 33.0 39.0 14 37.556455493990065 40.0 35.0 41.0 33.0 41.0 15 37.83139706104178 40.0 35.0 41.0 33.0 41.0 16 37.930128272352846 40.0 35.0 41.0 34.0 41.0 17 37.80357047940158 40.0 35.0 41.0 34.0 41.0 18 37.60257047509183 39.0 36.0 41.0 34.0 41.0 19 37.36139359888062 38.0 35.0 41.0 34.0 41.0 20 37.057776430583665 37.0 35.0 41.0 34.0 41.0 21 36.896741402419494 37.0 35.0 41.0 33.0 41.0 22 36.82065286878122 37.0 35.0 41.0 33.0 41.0 23 36.76232479094149 37.0 35.0 41.0 33.0 41.0 24 36.73375621501027 37.0 35.0 41.0 33.0 41.0 25 36.72330221219169 37.0 35.0 41.0 33.0 41.0 26 36.66047404312905 37.0 35.0 41.0 33.0 41.0 27 36.54962311287076 37.0 35.0 41.0 33.0 41.0 28 36.491212431600765 37.0 35.0 41.0 33.0 41.0 29 36.39404493913923 37.0 35.0 41.0 32.0 41.0 30 36.17885869354415 36.0 35.0 40.0 32.0 41.0 31 35.790669260174944 36.0 35.0 40.0 31.0 41.0 32 35.32697382692355 36.0 35.0 41.0 29.0 41.0 33 34.78742545938282 36.0 35.0 40.0 24.0 41.0 34 34.186267143803235 36.0 34.0 40.0 20.0 41.0 35 33.898341754094616 36.0 34.0 40.0 18.0 41.0 36 33.7578857544279 36.0 34.0 40.0 17.0 41.0 37 33.67284085407637 36.0 34.0 40.0 16.0 41.0 38 33.57338560574173 36.0 33.0 40.0 16.0 41.0 39 33.47760369603662 36.0 33.0 40.0 15.0 41.0 40 33.33389599438009 36.0 33.0 40.0 15.0 41.0 41 33.290841649942465 36.0 33.0 40.0 12.0 41.0 42 33.270361745561324 36.0 33.0 40.0 12.0 41.0 43 33.177159936043395 35.0 33.0 40.0 10.0 41.0 44 33.0399534834944 35.0 33.0 40.0 10.0 41.0 45 32.95027919959431 35.0 33.0 40.0 10.0 41.0 46 32.724999533111045 35.0 33.0 40.0 10.0 41.0 47 32.673646776239515 35.0 33.0 40.0 10.0 41.0 48 32.775236066237895 35.0 33.0 40.0 10.0 41.0 49 32.82861799433125 36.0 33.0 40.0 10.0 41.0 50 32.73654533779057 35.0 33.0 40.0 10.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 2.0 13 3.0 14 10.0 15 16.0 16 63.0 17 170.0 18 525.0 19 1062.0 20 1839.0 21 3097.0 22 4997.0 23 7893.0 24 13127.0 25 22747.0 26 37287.0 27 49542.0 28 46969.0 29 35055.0 30 32344.0 31 34196.0 32 39834.0 33 51872.0 34 100354.0 35 226383.0 36 68411.0 37 82591.0 38 146698.0 39 385105.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.292739373966562 24.179604279288665 28.09931661822993 22.42833972851485 2 36.60703896152404 24.13004222112723 28.93346760580781 10.32945121154092 3 23.01611700668154 23.662578634874162 42.21078384190709 11.110520516537207 4 22.57709773206895 25.77018720092171 39.54520706165951 12.107508005349828 5 17.84313105788417 29.510542352574426 41.1496529937638 11.4966735957776 6 17.81353748112691 38.75824777293969 34.9105081619372 8.517706583996196 7 77.74749783435354 3.40520071196974 17.346289382083242 1.5010120715934705 8 78.45034528233853 2.3378207347539206 17.22417996342464 1.9876540194829169 9 75.45801806357447 3.3736677503278996 18.844356461814947 2.323957724282679 10 45.71834097834066 22.95211730549047 22.93121504617891 8.398326669989958 11 34.87236692587384 20.86469270805649 28.358547731135168 15.9043926349345 12 30.825086158969224 17.951449295141337 36.211188957860756 15.01227558802868 13 12.22308097865671 35.60171930061472 41.91032284293712 10.264876877791457 14 7.836838831369766 35.05833238758391 42.03121116740914 15.07361761363718 15 7.120128372913545 17.46933257864924 62.45968593457521 12.950853113862005 16 14.806126157705032 14.016365535263045 56.23641532717423 14.941092979857693 17 13.621449309507152 19.30743847481026 35.02909795617565 32.042014259506935 18 11.731195508671924 21.309386479183217 50.74544208637589 16.213975925768967 19 17.397000705361464 18.412807410461475 47.05974885684036 17.13044302733671 20 18.785097479230625 17.527945099605372 41.961105995285145 21.725851425878865 21 12.665188903270666 21.92510526550179 46.792688375327 18.61701745590054 22 21.985944487621698 18.528452212838154 37.259103257160994 22.22650004237915 23 15.243780679991437 28.617060553342423 32.77854954122773 23.36060922543841 24 10.621149063995391 22.837621768230576 47.86035566882202 18.680873498952014 25 9.561454797248084 27.00844853518978 43.30689544704258 20.123201220519555 26 14.162537692304378 30.328819115726684 37.66824163873713 17.840401553231803 27 13.267116508187796 37.785969484137986 34.73610718046479 14.210806827209426 28 11.374636006188792 30.535686836748326 39.773048871062514 18.31662828600037 29 10.277949768494908 19.29975276434175 46.45616918331784 23.966128283845496 30 11.32414017011997 26.10720919641946 43.549821361103405 19.018829272357156 31 19.36389612367242 29.94668846439505 33.925516127781044 16.76389928415149 32 25.63249087411668 23.25193184283225 38.371807377420105 12.74376990563097 33 29.505227001409285 25.291661937919574 30.13804110634006 15.06506995433108 34 20.55654599861801 27.72257314713323 32.51450588064594 19.206374973602816 35 15.502365331268486 29.507094557224068 35.7694401785958 19.22109993291165 36 31.49604149996337 24.8334643016706 31.175683848659023 12.49481034970701 37 19.749977373843013 34.123189727868386 32.344630130570884 13.782202767717717 38 15.685026655767803 35.786176351859005 28.07194974263644 20.456847249736747 39 15.539357302215064 35.29192052257085 31.74837702216789 17.4203451530462 40 17.704069978752962 25.544643921752286 29.73658843523245 27.01469766426231 41 11.64744281328608 25.487898956610934 31.023262562545163 31.841395667557826 42 15.345346984687481 28.022028539126016 29.99395199232291 26.6386724838636 43 16.73150437367206 26.822411244409906 33.68883934279274 22.757245039125294 44 17.417400161184432 29.47060538976608 32.265618153791785 20.846376295257702 45 20.61400925445735 34.558761207130615 26.108645777815447 18.718583760596584 46 22.428842532003443 26.516203919855997 33.24342728096802 17.811526267172535 47 20.198334427529495 25.577828951999503 32.16714049909711 22.05669612137389 48 19.72749487499587 23.39386608475543 32.18323021073213 24.695408829516577 49 18.91417431765975 22.309318959857606 36.42344385911734 22.353062863365306 50 18.127502345219128 27.723075950621823 31.930679201318206 22.21874250284084 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3494.0 1 4439.0 2 5384.0 3 18611.0 4 31838.0 5 23728.5 6 15619.0 7 18164.0 8 20709.0 9 23453.0 10 26197.0 11 26244.0 12 26291.0 13 24320.0 14 22349.0 15 20215.0 16 18081.0 17 16629.0 18 15177.0 19 14396.5 20 13616.0 21 13624.0 22 13632.0 23 11625.0 24 9618.0 25 12282.0 26 14946.0 27 15851.0 28 16756.0 29 18833.0 30 20910.0 31 31994.5 32 43079.0 33 44360.0 34 45641.0 35 45460.0 36 45279.0 37 50567.5 38 55856.0 39 62051.0 40 68246.0 41 88164.0 42 108082.0 43 124847.0 44 141612.0 45 150747.0 46 159882.0 47 160120.5 48 160359.0 49 138111.5 50 115864.0 51 89616.5 52 63369.0 53 47454.0 54 31539.0 55 25562.0 56 19585.0 57 17089.0 58 14593.0 59 13105.0 60 11617.0 61 11075.5 62 10534.0 63 9566.5 64 8599.0 65 6466.0 66 4333.0 67 3919.5 68 3506.0 69 3291.0 70 3076.0 71 2295.0 72 1514.0 73 1065.5 74 617.0 75 476.5 76 336.0 77 281.5 78 227.0 79 186.0 80 145.0 81 93.5 82 42.0 83 34.5 84 27.0 85 20.0 86 13.0 87 7.5 88 2.0 89 2.0 90 2.0 91 1.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1392194.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.41884036630125 #Duplication Level Percentage of deduplicated Percentage of total 1 77.94294978201974 17.47390548841735 2 9.26706846314275 4.15513857077564 3 3.6403659226844667 2.4483834748675806 4 1.9517671931455 1.7502542854125132 5 1.156173159259016 1.2960030746615039 6 0.7918917532309179 1.0651976881844623 7 0.5363452310712418 0.841696668162919 8 0.4095618481825103 0.7345521355624804 9 0.3030632817366103 0.6114894600726404 >10 2.3620902500157652 11.606906369168222 >50 0.9075360548350543 15.010363383962359 >100 0.6518784112380821 26.071306430864045 >500 0.057063540449619025 8.705661778110061 >1k 0.021922716104938383 6.726941303059881 >5k 0.0 0.0 >10k+ 3.223928838961527E-4 1.5021998887183747 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 20784 1.4928953867061632 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2850 0.20471284892766384 No Hit TGTGCAGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 2084 0.1496917814614917 No Hit TAAGTGCGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAA 2060 0.14796788378631137 No Hit GGGCAAGGGATAAAACTGGGTCACATAATAATCATATTCCAACTTTTGTA 1973 0.1417187547137827 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 1892 0.13590060006004911 No Hit AAGCTAGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 1817 0.13051341982511058 No Hit ACGAAAGGGGTTTCCTCCTATGGTTTTCAAAACAATCACCATCATGCTAT 1755 0.1260600174975614 No Hit GAAGATGGGAAGCTATACTATATAGGTGGCTATCTATCCCTACCAAGGCT 1729 0.12419246168278272 No Hit ATTATGGGGAGCTAAAATTTTTTTAAAATGGAATTTTGCTTCCACTATTT 1700 0.12210941865860647 No Hit TGATTTGGGGATGAAGATTTAAAGGTTGTTGTCTCTGTTAATGTCCCAGA 1691 0.12146295703041386 No Hit TAGTTAGGGCTATTAATGATATTAAAATCCCAACTATCCAAAGAATATCC 1669 0.1198827174948319 No Hit GGGGAGGGGGGCATAAGTAAATAGAATTAAGTAAATTACCTTACTATTTT 1635 0.11744052912165975 No Hit AGCATAGGGCATCATGCTATTAATGATATTAAAATCCCAACTATACCAAA 1573 0.11298712679411059 No Hit GGATTTGGGATCCCAATAGGAGTTTTCCTCCTATGGTTTTCAAAACAATC 1514 0.10874921167595897 No Hit ATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCC 1507 0.1082464081873647 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCTAGGGATCGTATGC 1502 0.1078872628383688 No Hit GGTTATGGGGGTTTTCAAAACAATCACCATCATGCTATTAATGATATTAA 1490 0.10702531400077864 No Hit TTAGGGGGCTATTAATGATATTAAAAATCCAACTATACCAAAGAATATCC 1477 0.10609153609338927 No Hit CTAGGCGGGAAATCCATAAATAAAAATATATCAACAATAATTTTAAATAA 1468 0.10544507446519666 No Hit TCCTATGGGCATGTACAATAAGCATGGAGTCGTATTGATGAGGACTTACC 1450 0.10415215120881142 No Hit AAATAAGGGACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTA 1446 0.1038648349296147 No Hit AGATAAGGGTATTTGCATTATTGATGGTTTTTACTATGTTGGGTATGCTG 1440 0.10343386051081961 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.06529262444745489 0.0 2 0.0 0.0 0.0 0.2737405850046761 0.0 3 0.0 0.0 0.0 0.4428262153119465 0.0 4 0.0 0.0 0.0 0.7822903991828725 0.0 5 0.0 0.0 0.0 1.4361504215648107 0.0 6 0.0 0.0 0.0 2.054598712535753 0.0 7 0.0 0.0 0.0 2.4288999952592816 0.0 8 0.0 0.0 0.0 3.28862213168567 0.0 9 0.0 0.0 0.0 3.682317263254977 0.0 10 0.0 0.0 0.0 4.325546583306637 0.0 11 0.0 0.0 0.0 5.067612703401968 0.0 12 0.0 0.0 0.0 5.661351794361993 0.0 13 0.0 0.0 0.0 5.8898400653931855 0.0 14 0.0 0.0 0.0 5.954342570072849 0.0 15 0.0 0.0 0.0 6.056986310815877 0.0 16 0.0 0.0 0.0 6.324836912097021 0.0 17 0.0 0.0 0.0 6.640094699445624 0.0 18 0.0 0.0 0.0 7.191167322944934 0.0 19 0.0 0.0 0.0 7.392576034661836 0.0 20 0.0 0.0 0.0 7.693539837120401 0.0 21 0.0 0.0 0.0 8.107921740791872 0.0 22 0.0 0.0 0.0 8.387193164171086 0.0 23 0.0 0.0 0.0 8.726513689902413 0.0 24 0.0 0.0 0.0 8.977053485361953 0.0 25 0.0 0.0 0.0 9.220913177330171 0.0 26 0.0 0.0 0.0 9.482586478608585 0.0 27 0.0 0.0 0.0 9.652749544962843 0.0 28 0.0 0.0 0.0 9.826647722946658 0.0 29 0.0 0.0 0.0 10.05334026723287 0.0 30 0.0 0.0 0.0 10.405087222039457 0.0 31 0.0 0.0 0.0 10.778598384995195 0.0 32 0.0 0.0 0.0 11.07963401652356 0.0 33 0.0 0.0 0.0 11.32320639221258 0.0 34 0.0 0.0 0.0 11.552341124871965 0.0 35 0.0 0.0 0.0 12.010610590190735 0.0 36 0.0 0.0 0.0 12.33520615661323 0.0 37 0.0 0.0 0.0 12.722221184691215 0.0 38 0.0 0.0 0.0 13.041357741808971 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCCGCAA 30 2.5281042E-6 44.000004 32 GGTCCGC 30 2.5281042E-6 44.000004 30 CCTACCG 30 2.5281042E-6 44.000004 14 GTAGCCG 30 2.5281042E-6 44.000004 43 ACCTACG 30 2.5281042E-6 44.000004 13 CAAGGCG 65 0.0 44.000004 1 TGTTACG 60 0.0 44.000004 1 GTCCGCA 30 2.5281042E-6 44.000004 31 CATACGT 30 2.5281042E-6 44.000004 24 CATACGA 145 0.0 44.000004 18 CCCCAGT 30 2.5281042E-6 44.000004 18 ACCACTC 30 2.5281042E-6 44.000004 15 CGTAAGA 30 2.5281042E-6 44.000004 2 CGATGTT 30 2.5281042E-6 44.000004 10 CGGTCCG 30 2.5281042E-6 44.000004 29 ATACGTC 30 2.5281042E-6 44.000004 25 ATACGAA 145 0.0 44.000004 19 GACGAAC 65 0.0 44.000004 20 TCGAATC 30 2.5281042E-6 44.000004 18 ACGAACA 65 0.0 44.000004 21 >>END_MODULE