##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546219_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2078453 Sequences flagged as poor quality 0 Sequence length 50 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.865768915631 31.0 31.0 34.0 30.0 34.0 2 32.215887008270094 33.0 31.0 34.0 30.0 34.0 3 32.094569374433775 33.0 31.0 34.0 30.0 34.0 4 35.88110676546451 37.0 35.0 37.0 35.0 37.0 5 35.876710226307736 37.0 35.0 37.0 35.0 37.0 6 35.934332409729734 37.0 35.0 37.0 35.0 37.0 7 36.17412084853495 37.0 35.0 37.0 35.0 37.0 8 36.07355326293161 37.0 35.0 37.0 35.0 37.0 9 37.82482885107337 39.0 38.0 39.0 35.0 39.0 10 37.455815936179455 39.0 37.0 39.0 35.0 39.0 11 37.29666487527021 39.0 37.0 39.0 34.0 39.0 12 36.71073870806797 39.0 35.0 39.0 33.0 39.0 13 36.46509302832443 39.0 35.0 39.0 33.0 39.0 14 37.518483218047265 40.0 35.0 41.0 33.0 41.0 15 37.74097946886458 40.0 35.0 41.0 33.0 41.0 16 37.855429494917615 40.0 35.0 41.0 33.0 41.0 17 37.78324407624324 40.0 35.0 41.0 33.0 41.0 18 37.56514965698046 39.0 36.0 41.0 33.0 41.0 19 37.29783690081036 38.0 35.0 41.0 33.0 41.0 20 36.99454594354551 38.0 35.0 41.0 33.0 41.0 21 36.884378910660956 38.0 35.0 41.0 33.0 41.0 22 36.81820036344339 38.0 35.0 41.0 33.0 41.0 23 36.80117327647053 38.0 35.0 41.0 33.0 41.0 24 36.73408058782181 38.0 35.0 41.0 33.0 41.0 25 36.721370654039326 38.0 35.0 41.0 33.0 41.0 26 36.64318173179764 38.0 35.0 41.0 33.0 41.0 27 36.57318977143096 38.0 35.0 41.0 32.0 41.0 28 36.479142900994155 38.0 35.0 41.0 32.0 41.0 29 36.37122994842799 38.0 35.0 41.0 32.0 41.0 30 36.13959035879089 37.0 35.0 41.0 31.0 41.0 31 35.79506296269389 37.0 35.0 41.0 30.0 41.0 32 35.393963683566575 37.0 35.0 41.0 27.0 41.0 33 34.93597449641633 37.0 35.0 41.0 23.0 41.0 34 34.414523686607296 37.0 34.0 40.0 21.0 41.0 35 34.15305085080105 37.0 34.0 40.0 18.0 41.0 36 33.986813269292114 37.0 34.0 40.0 18.0 41.0 37 33.93357511572309 37.0 34.0 40.0 18.0 41.0 38 33.870714420773524 37.0 33.0 40.0 18.0 41.0 39 33.81822826881339 37.0 34.0 40.0 17.0 41.0 40 33.659129169627604 37.0 33.0 40.0 16.0 41.0 41 33.55125422609989 37.0 33.0 40.0 15.0 41.0 42 33.48414999040151 36.0 33.0 40.0 15.0 41.0 43 33.37261559438679 36.0 33.0 40.0 15.0 41.0 44 33.24684176163714 36.0 33.0 40.0 14.0 41.0 45 33.20607394057022 36.0 33.0 40.0 15.0 41.0 46 33.15423827240741 36.0 33.0 40.0 13.0 41.0 47 33.1100125910954 35.0 33.0 40.0 13.0 41.0 48 33.03517808677896 35.0 33.0 40.0 12.0 41.0 49 32.9445371148638 36.0 33.0 40.0 11.0 41.0 50 32.78776955745451 35.0 32.0 40.0 10.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 2.0 10 4.0 11 1.0 12 1.0 13 13.0 14 21.0 15 52.0 16 146.0 17 367.0 18 913.0 19 1805.0 20 3285.0 21 5336.0 22 8441.0 23 12779.0 24 20487.0 25 34146.0 26 53018.0 27 65492.0 28 63260.0 29 55249.0 30 52567.0 31 54367.0 32 62757.0 33 80428.0 34 149671.0 35 282651.0 36 110786.0 37 141032.0 38 238601.0 39 580774.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.02437245393569 21.282559672987553 27.13845345552678 20.554614417549978 2 39.343300040943916 21.813194717417232 28.599876927695746 10.24362831394311 3 25.728125678088464 22.867584689189506 40.77648135416101 10.627808278561025 4 23.154528873157105 25.310940396535308 39.796473627260276 11.738057103047314 5 20.176256090467284 27.759780952468017 39.910741306154144 12.153221650910558 6 17.28362392606424 38.65528833223556 36.350208544528066 7.710879197172127 7 76.68491902390865 3.508907827119497 18.054389490645207 1.7517836583266495 8 76.78162556478304 2.772687186094658 18.007383376001286 2.4383038731210185 9 72.68747477089931 4.579126879462754 19.792845929159814 2.9405524204781153 10 40.22073147672812 24.484797106309355 25.853988519345876 9.44048289761664 11 34.008370648746926 21.513308215292817 32.492050578002 11.986270557958251 12 32.626188804846684 18.846180308142642 36.72962535116262 11.798005535848057 13 18.51299981284157 32.457938668808 35.816253723322106 13.212807795028322 14 12.574929526912564 35.028889274859715 38.710569832466746 13.685611365760977 15 12.465809907657281 22.266849430802623 52.69957992795603 12.567760733584066 16 14.793213991367619 19.9576319503015 48.703627168860685 16.545526889470196 17 14.65402393029816 20.226293305646074 37.50212297319208 27.617559790863687 18 15.962930121585622 23.671644246947128 44.634302531738754 15.7311230997285 19 20.065356301056603 24.112500980296403 37.428558644337876 18.393584074309114 20 20.79060724490763 23.224677199821215 39.86498612188969 16.119729433381462 21 17.481896391210196 25.12209802194228 41.42143219019145 15.97457339665607 22 19.202310564636292 22.429951507202713 36.458317796938395 21.909420131222596 23 14.700452692459248 25.34380137534984 36.04955223909321 23.906193693097702 24 14.17130914194355 22.901119245900677 48.60037729984753 14.327194312308242 25 15.316776467882603 25.21827532304074 42.530430084298274 16.934518124778382 26 13.84087107093593 27.551164255337984 37.89741697310451 20.710547700621568 27 14.232845294072083 30.691528747582936 37.39194487438494 17.683681083960042 28 12.609907464830814 27.60947685610404 41.23682373380586 18.543791945259287 29 13.624941242356694 23.69762510867458 41.11639762842845 21.56103602054028 30 15.600497100487717 28.651213185960906 37.804463223368536 17.943826490182843 31 19.24224411136552 30.110615924439955 34.30902695418179 16.338113010012737 32 21.288814324884903 24.7313266164787 36.25619631524023 17.723662743396172 33 20.866769659934576 29.387145150744328 32.36137646605432 17.384708723266776 34 15.91751172626949 27.691845810321425 34.44533025283709 21.945312210572 35 17.183116481344538 27.853023378445414 34.60193711380531 20.361923026404735 36 23.708258016900068 28.346804089387632 31.658016803844014 16.28692108986828 37 16.880680005754282 31.619430412908063 36.16795761078071 15.331931970556948 38 16.989703399595758 29.60779002460003 34.122253425985576 19.280253149818638 39 16.703913920593827 29.458881196736225 35.24953414871542 18.587670733954536 40 19.452929654892365 25.799861724080365 34.22025900994634 20.526949611080934 41 14.560877729734568 25.93760840394274 36.055903116404366 23.445610749918327 42 16.730616472924815 26.50966848901563 33.75808834743918 23.00162669062038 43 16.863311318562413 25.600049652313523 35.19882335563999 22.337815673484076 44 15.424789494879123 28.18158505388383 33.53672178297994 22.85690366825711 45 15.946427463118 34.41588527621264 29.625206824498797 20.012480436170556 46 19.723082504150923 29.474998953548624 33.05973240674675 17.742186135553702 47 16.789265862639184 29.535957753194324 33.754191218180054 19.92058516598643 48 17.668958595647823 27.79918525942131 34.1154695343123 20.41638661061857 49 19.582160385632967 26.179182305301108 35.24770586585311 18.99095144321281 50 18.59941023443879 28.615321106611503 32.12990623314552 20.655362425804192 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 4686.0 1 9226.5 2 13767.0 3 39801.5 4 65836.0 5 46963.0 6 28090.0 7 28442.5 8 28795.0 9 30523.0 10 32251.0 11 31927.5 12 31604.0 13 29498.0 14 27392.0 15 25601.5 16 23811.0 17 21039.0 18 18267.0 19 17752.5 20 17238.0 21 17720.5 22 18203.0 23 17667.0 24 17131.0 25 21780.5 26 26430.0 27 36133.0 28 45836.0 29 49494.5 30 53153.0 31 61129.0 32 69105.0 33 89032.0 34 108959.0 35 103510.5 36 98062.0 37 105703.0 38 113344.0 39 119664.5 40 125985.0 41 148219.5 42 170454.0 43 165704.5 44 160955.0 45 152431.0 46 143907.0 47 139994.5 48 136082.0 49 125748.0 50 115414.0 51 99878.5 52 84343.0 53 72271.5 54 60200.0 55 54234.5 56 48269.0 57 46610.5 58 44952.0 59 41959.5 60 38967.0 61 35147.0 62 31327.0 63 28586.0 64 25845.0 65 21729.5 66 17614.0 67 14479.5 68 11345.0 69 10069.5 70 8794.0 71 6956.5 72 5119.0 73 4211.5 74 3304.0 75 2480.5 76 1657.0 77 1265.5 78 874.0 79 744.0 80 614.0 81 370.5 82 127.0 83 167.5 84 208.0 85 138.5 86 69.0 87 45.5 88 22.0 89 15.0 90 8.0 91 13.5 92 19.0 93 17.0 94 15.0 95 8.5 96 2.0 97 1.5 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2078453.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.7266322411094 #Duplication Level Percentage of deduplicated Percentage of total 1 78.76439439080893 17.900494250136145 2 8.662231874674033 3.937267164058647 3 3.321513390176298 2.2646043990737166 4 1.8182217103460625 1.652882245753436 5 1.0922087313667121 1.2411113084149958 6 0.7579751642383913 1.0335733683324249 7 0.577423717091482 0.9186027525942754 8 0.435668051841569 0.7921014074723136 9 0.3443966226365269 0.704427784896643 >10 2.9028273150135266 14.334665589410791 >50 0.7393919784990557 11.98692936818123 >100 0.49146429699797956 21.840492793067305 >500 0.061379754773933246 9.687285162137483 >1k 0.030689877386966623 9.953343788529326 >5k 0.0 0.0 >10k+ 2.1312414852060155E-4 1.7522186179412487 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 36176 1.7405252849114219 No Hit GAGAAGGGGAAGAGGAAGAAGAGGAAGAAGAGGAAGAAGAGGAAGAAGAG 3573 0.1719067017632826 No Hit GGGGAAGGTATCCATGTATCTGCTTACTGCTTTATGAGTTCATTGTTACA 2936 0.1412589074662742 No Hit ATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCC 2632 0.1266326445678589 No Hit TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2602 0.12518926336077843 No Hit GTTGTAGGGACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTA 2459 0.1183091462736949 No Hit ATAGTAGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGG 2308 0.11104412753138992 No Hit ATGTATGGTGGCATGACACAGAAATATATTTTGTGTTTGTATGACTTTTA 2285 0.10993753527262826 No Hit TGTAATGGGAAGTTTAGTATAGAAACAATTATCATGGAAATAACTACTGT 2237 0.10762812534129951 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2187 0.1052224899961654 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.07149548245738538 0.0 2 0.0 0.0 0.0 0.3094128180911476 0.0 3 0.0 0.0 0.0 0.4672706094388471 0.0 4 0.0 0.0 0.0 0.7488261702333419 0.0 5 0.0 0.0 0.0 1.3259380895310118 0.0 6 0.0 0.0 0.0 1.8672541548930863 0.0 7 0.0 0.0 0.0 2.2104420932299167 0.0 8 0.0 0.0 0.0 2.9922254676915956 0.0 9 0.0 0.0 0.0 3.2861941068669824 0.0 10 0.0 0.0 0.0 3.7729984753083183 0.0 11 0.0 0.0 0.0 4.362956487349004 0.0 12 0.0 0.0 0.0 4.8393685110993605 0.0 13 0.0 0.0 0.0 5.010986536621227 0.0 14 0.0 0.0 0.0 5.076034916353653 0.0 15 0.0 0.0 0.0 5.178081967694242 0.0 16 0.0 0.0 0.0 5.413112540913843 0.0 17 0.0 0.0 0.0 5.686825730483201 0.0 18 0.0 0.0 0.0 6.119743867193533 0.0 19 0.0 0.0 0.0 6.304496661699831 0.0 20 0.0 0.0 0.0 6.5277877344351785 0.0 21 0.0 0.0 0.0 6.818099807885961 0.0 22 0.0 0.0 0.0 7.10672793659515 0.0 23 0.0 0.0 0.0 7.405892748116027 0.0 24 0.0 0.0 0.0 7.656656176492805 0.0 25 0.0 0.0 0.0 7.859451236087609 0.0 26 0.0 0.0 0.0 8.095492176152167 0.0 27 0.0 0.0 0.0 8.344427321666643 0.0 28 0.0 0.0 0.0 8.580708825265715 0.0 29 0.0 0.0 0.0 8.90498846978979 0.0 30 0.0 0.0 0.0 9.261696078766274 0.0 31 0.0 0.0 0.0 9.605557594999743 0.0 32 0.0 0.0 0.0 9.889278227604859 0.0 33 0.0 0.0 0.0 10.155678285725008 0.0 34 0.0 0.0 0.0 10.447722416624288 0.0 35 0.0 0.0 0.0 10.802938531686788 0.0 36 0.0 0.0 0.0 11.082569584205176 0.0 37 0.0 0.0 0.0 11.373410897431889 0.0 38 0.0 0.0 0.0 11.694418877886582 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGATAT 75 0.0 44.000004 9 TCACGAA 25 4.4440865E-5 44.0 34 GGTACGA 25 4.4440865E-5 44.0 8 CAAGTCG 40 8.3182385E-9 44.0 15 GATCGAT 25 4.4440865E-5 44.0 16 CGACGGT 115 0.0 44.0 28 ATTACGA 20 7.857952E-4 44.0 10 CCGGATT 30 2.52871E-6 44.0 5 TAACGTG 30 2.52871E-6 44.0 15 CGTTACA 20 7.857952E-4 44.0 33 CGGATGT 20 7.857952E-4 44.0 31 TACGAAC 25 4.4440865E-5 44.0 10 GTCACGA 30 2.52871E-6 44.0 14 CTCGCTA 20 7.857952E-4 44.0 41 ACGTCGA 20 7.857952E-4 44.0 27 ACGTACA 30 2.52871E-6 44.0 21 CCGAACT 100 0.0 44.0 12 TCGACAG 20 7.857952E-4 44.0 1 GTGCGTA 25 4.4440865E-5 44.0 1 TATCGGC 25 4.4440865E-5 44.0 24 >>END_MODULE