##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546218_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2134150 Sequences flagged as poor quality 0 Sequence length 50 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.80303961764637 31.0 31.0 34.0 30.0 34.0 2 32.18508820842021 33.0 31.0 34.0 30.0 34.0 3 32.189079024435955 33.0 31.0 34.0 30.0 34.0 4 35.91689337675421 37.0 35.0 37.0 35.0 37.0 5 35.83400745027294 37.0 35.0 37.0 35.0 37.0 6 35.91498816859171 37.0 35.0 37.0 35.0 37.0 7 36.14907949300658 37.0 35.0 37.0 35.0 37.0 8 36.05269779537521 37.0 35.0 37.0 35.0 37.0 9 37.793538879647635 39.0 38.0 39.0 35.0 39.0 10 37.450590164702575 39.0 37.0 39.0 35.0 39.0 11 37.28799803200337 39.0 37.0 39.0 34.0 39.0 12 36.68810392896469 39.0 35.0 39.0 33.0 39.0 13 36.40115127802638 39.0 35.0 39.0 33.0 39.0 14 37.43632968629197 40.0 35.0 41.0 33.0 41.0 15 37.693976056041045 40.0 35.0 41.0 33.0 41.0 16 37.799732446172946 40.0 35.0 41.0 33.0 41.0 17 37.73857226530469 40.0 35.0 41.0 33.0 41.0 18 37.5374875243071 39.0 36.0 41.0 33.0 41.0 19 37.27581051003913 38.0 35.0 41.0 33.0 41.0 20 36.972360424524986 38.0 35.0 41.0 33.0 41.0 21 36.86162500292857 38.0 35.0 41.0 33.0 41.0 22 36.80634491483729 38.0 35.0 41.0 33.0 41.0 23 36.776520863107095 38.0 35.0 41.0 33.0 41.0 24 36.71336082281002 38.0 35.0 41.0 33.0 41.0 25 36.69409601012113 38.0 35.0 41.0 33.0 41.0 26 36.629827800295196 38.0 35.0 41.0 33.0 41.0 27 36.54694749666143 38.0 35.0 41.0 32.0 41.0 28 36.44832275144671 38.0 35.0 41.0 32.0 41.0 29 36.34615233231029 37.0 35.0 41.0 32.0 41.0 30 36.11756436988965 37.0 35.0 41.0 31.0 41.0 31 35.785587236136166 37.0 35.0 41.0 30.0 41.0 32 35.39855164819718 37.0 35.0 41.0 28.0 41.0 33 34.92303212051637 37.0 35.0 41.0 23.0 41.0 34 34.48473537473936 37.0 34.0 41.0 21.0 41.0 35 34.18789307218331 37.0 34.0 41.0 18.0 41.0 36 34.009285664081716 37.0 34.0 40.0 18.0 41.0 37 33.888379917063 37.0 34.0 40.0 18.0 41.0 38 33.83480730033034 37.0 33.0 40.0 17.0 41.0 39 33.786465337487996 37.0 34.0 40.0 17.0 41.0 40 33.64851205397934 37.0 33.0 40.0 15.0 41.0 41 33.56950636084624 37.0 33.0 40.0 15.0 41.0 42 33.483634233769884 36.0 33.0 40.0 15.0 41.0 43 33.400089965560056 36.0 33.0 40.0 15.0 41.0 44 33.264439706674786 36.0 33.0 40.0 14.0 41.0 45 33.21323571445306 36.0 33.0 40.0 15.0 41.0 46 33.171904505306564 36.0 33.0 40.0 14.0 41.0 47 33.10830447719233 35.0 33.0 40.0 13.0 41.0 48 33.05535974509758 35.0 33.0 40.0 12.0 41.0 49 32.96247967574913 36.0 33.0 40.0 12.0 41.0 50 32.78101445540379 35.0 32.0 40.0 10.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 3.0 11 1.0 12 7.0 13 8.0 14 22.0 15 69.0 16 168.0 17 395.0 18 974.0 19 1948.0 20 3373.0 21 5601.0 22 8637.0 23 13443.0 24 20957.0 25 34643.0 26 53897.0 27 66318.0 28 65182.0 29 57094.0 30 54646.0 31 56690.0 32 65477.0 33 84184.0 34 156411.0 35 285670.0 36 115240.0 37 146857.0 38 246603.0 39 589631.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.085443853524826 21.376285640653187 27.216924770986108 20.321345734835884 2 39.41826956868074 21.791064358175387 28.567064170747138 10.223601902396737 3 25.712859920811564 22.88480191176815 40.730595318979454 10.67174284844083 4 23.31232575029871 25.275355527961953 39.640184616826375 11.772134104912963 5 20.226413326148585 27.768807253473284 39.824942014385115 12.179837405993018 6 17.3258674413701 38.66152800880913 36.2370967364056 7.775507813415176 7 76.76451983225172 3.520839678560551 17.9655600590399 1.749080430147834 8 76.83133800342057 2.7736569594452125 17.918234425883842 2.4767706112503807 9 72.70407422158705 4.597614975517185 19.69449195229951 3.003818850596256 10 40.27430124405501 24.451561511608837 25.755124991214302 9.519012253121852 11 34.09572897875032 21.50701684511398 32.365766230115035 12.031487946020663 12 32.71311763465548 18.828714007918844 36.64850174542558 11.809666612000095 13 18.650563456176933 32.43328725722184 35.71220392193614 13.20394536466509 14 12.638380619918937 35.051613054377626 38.606611531523086 13.703394794180355 15 12.482346601691539 22.23704987934306 52.682894829323146 12.597708689642245 16 14.917226999039428 19.971792048356487 48.555162476864325 16.555818475739756 17 14.741044443923808 20.1686854251107 37.382517629969776 27.707752500995714 18 16.05252676709697 23.603542393927324 44.58149614600661 15.7624346929691 19 20.152191739099877 24.083265000117144 37.339737131879204 18.42480612890378 20 20.83864770517536 23.251364711946206 39.77246210435068 16.13752547852775 21 17.48822716303915 25.13590890987044 41.411569008738844 15.964294918351568 22 19.198228803036336 22.45109294098353 36.42246327577724 21.92821498020289 23 14.69175081414146 25.417379284492654 35.9692149099173 23.921654991448584 24 14.23494131152918 22.924536700794228 48.41402900452171 14.426492983154887 25 15.420565564744745 25.13084834711712 42.39776960382354 17.0508164843146 26 13.854368249654428 27.5253379565635 37.781036946793805 20.839256846988263 27 14.208139071761591 30.675538270505818 37.359276526954524 17.75704613077806 28 12.644331466860342 27.646229177892838 41.09125412927864 18.618185225968183 29 13.698146803176908 23.73188388819905 40.95087036993651 21.619098938687532 30 15.65274230958461 28.650141742614153 37.6813719747909 18.01574397301033 31 19.251973853759107 30.11728322751447 34.26942810955181 16.361314809174612 32 21.381721059906756 24.673242274441815 36.18185225968184 17.76318440596959 33 20.894595037837078 29.365695944521235 32.28671836562566 17.452990652016027 34 15.95750064428461 27.6735937024108 34.30175948269803 22.067146170606563 35 17.181641402900453 27.821099735257597 34.444720380479346 20.552538481362603 36 23.799358058243328 28.315722887332196 31.524119672937704 16.360799381486775 37 16.879975634327486 31.666143429468406 36.02994166295715 15.423939273246958 38 17.044865637373192 29.570461307780615 33.96743434154113 19.417238713305064 39 16.724363329662864 29.42000327999438 35.1651008598271 18.690532530515664 40 19.499426000984 25.729728463322633 34.15251973853759 20.618325797155777 41 14.56369046224492 25.83890541901928 36.02600566970457 23.571398449031232 42 16.691891385329054 26.44664152004311 33.821615162945434 23.039851931682403 43 16.872947074947874 25.51142140899187 35.135065482744885 22.480566033315373 44 15.44830494576295 28.009090270130965 33.56085560996181 22.981749174144273 45 15.924888128763207 34.39167818569454 29.53831736288452 20.14511632265773 46 19.809713469062622 29.42632898343603 32.95508750556428 17.808870041937073 47 16.78968207483073 29.53822364875946 33.61895836749994 20.05313590890987 48 17.583534428226695 27.895930464119207 34.061804465478055 20.458730642176043 49 19.64065318745168 26.095166693999953 35.16950542370499 19.09467469484338 50 18.611531523088818 28.570531593374408 32.00974626900639 20.808190614530375 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 4868.0 1 9503.5 2 14139.0 3 40868.5 4 67598.0 5 47812.0 6 28026.0 7 28861.0 8 29696.0 9 31106.5 10 32517.0 11 32128.0 12 31739.0 13 29709.5 14 27680.0 15 25832.5 16 23985.0 17 21182.5 18 18380.0 19 17986.0 20 17592.0 21 17978.0 22 18364.0 23 18067.5 24 17771.0 25 22358.0 26 26945.0 27 36698.5 28 46452.0 29 50164.5 30 53877.0 31 61832.5 32 69788.0 33 90486.5 34 111185.0 35 105957.0 36 100729.0 37 108059.0 38 115389.0 39 122404.0 40 129419.0 41 152115.0 42 174811.0 43 169829.0 44 164847.0 45 156181.0 46 147515.0 47 144529.0 48 141543.0 49 131337.0 50 121131.0 51 104915.5 52 88700.0 53 75859.0 54 63018.0 55 56574.5 56 50131.0 57 48454.5 58 46778.0 59 43446.0 60 40114.0 61 36041.0 62 31968.0 63 29216.0 64 26464.0 65 22202.5 66 17941.0 67 14792.5 68 11644.0 69 10242.5 70 8841.0 71 7163.5 72 5486.0 73 4426.0 74 3366.0 75 2513.5 76 1661.0 77 1295.0 78 929.0 79 773.0 80 617.0 81 385.5 82 154.0 83 185.0 84 216.0 85 149.0 86 82.0 87 48.5 88 15.0 89 12.5 90 10.0 91 10.5 92 11.0 93 13.0 94 15.0 95 8.0 96 1.0 97 1.5 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2134150.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.69001741857496 #Duplication Level Percentage of deduplicated Percentage of total 1 78.750695088838 17.8685464329062 2 8.583263562610469 3.895087994877026 3 3.3890785767254155 2.3069475581645675 4 1.7961725892029368 1.630207493431261 5 1.1093529431752938 1.2585618801997405 6 0.7795166338739421 1.06123476004012 7 0.576914575361821 0.9163141234792647 8 0.4476284285302498 0.8125357472320565 9 0.3510047962417764 0.7167874446656336 >10 2.8949886113802337 14.199349201051135 >50 0.7399046961588408 11.951568498122386 >100 0.4883511108706714 21.77720574408591 >500 0.06125222771122834 9.560124743838477 >1k 0.03166781840852621 10.304715291620749 >5k 0.0 0.0 >10k+ 2.0834091058240933E-4 1.7408130862854512 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 36825 1.7255113276948668 No Hit GAGAAGGGGAAGAGGAAGAAGAGGAAGAAGAGGAAGAAGAGGAAGAAGAG 3722 0.17440198673945131 No Hit GGGGAAGGTATCCATGTATCTGCTTACTGCTTTATGAGTTCATTGTTACA 3089 0.1447414661574866 No Hit TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2655 0.12440550101914111 No Hit ATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCC 2606 0.12210950495513437 No Hit GTTGTAGGGACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTA 2588 0.12126607782958086 No Hit ATAGTAGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGG 2388 0.11189466532343087 No Hit TGTAATGGGAAGTTTAGTATAGAAACAATTATCATGGAAATAACTACTGT 2286 0.10711524494529437 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2284 0.10702153082023289 No Hit ATGTATGGTGGCATGACACAGAAATATATTTTGTGTTTGTATGACTTTTA 2197 0.10294496638005764 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.08017243399011316 0.0 2 0.0 0.0 0.0 0.33024857671672564 0.0 3 0.0 0.0 0.0 0.49518543682496546 0.0 4 0.0 0.0 0.0 0.7859335098282688 0.0 5 0.0 0.0 0.0 1.3871096220977908 0.0 6 0.0 0.0 0.0 1.9418972424618701 0.0 7 0.0 0.0 0.0 2.2914509289412646 0.0 8 0.0 0.0 0.0 3.0779935805824334 0.0 9 0.0 0.0 0.0 3.378862779092379 0.0 10 0.0 0.0 0.0 3.8896047606775532 0.0 11 0.0 0.0 0.0 4.48923458988356 0.0 12 0.0 0.0 0.0 4.98409202727081 0.0 13 0.0 0.0 0.0 5.165100859827097 0.0 14 0.0 0.0 0.0 5.234215027059953 0.0 15 0.0 0.0 0.0 5.341705128505494 0.0 16 0.0 0.0 0.0 5.587048707916501 0.0 17 0.0 0.0 0.0 5.874095072979875 0.0 18 0.0 0.0 0.0 6.329498863716234 0.0 19 0.0 0.0 0.0 6.524658529156807 0.0 20 0.0 0.0 0.0 6.765597544689923 0.0 21 0.0 0.0 0.0 7.069934165827144 0.0 22 0.0 0.0 0.0 7.378628493779725 0.0 23 0.0 0.0 0.0 7.6992713726776465 0.0 24 0.0 0.0 0.0 7.9675280556661905 0.0 25 0.0 0.0 0.0 8.187568821310592 0.0 26 0.0 0.0 0.0 8.44045638778905 0.0 27 0.0 0.0 0.0 8.715085631281775 0.0 28 0.0 0.0 0.0 8.966801771196964 0.0 29 0.0 0.0 0.0 9.300752055853618 0.0 30 0.0 0.0 0.0 9.67762340978844 0.0 31 0.0 0.0 0.0 10.027411381580489 0.0 32 0.0 0.0 0.0 10.317456598645832 0.0 33 0.0 0.0 0.0 10.597614975517185 0.0 34 0.0 0.0 0.0 10.90790244359581 0.0 35 0.0 0.0 0.0 11.280556661902866 0.0 36 0.0 0.0 0.0 11.563526462526065 0.0 37 0.0 0.0 0.0 11.861537380221634 0.0 38 0.0 0.0 0.0 12.198533373942787 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACGTCC 20 7.8580005E-4 44.0 33 TACCCGC 20 7.8580005E-4 44.0 24 CGAGTAA 40 8.3182385E-9 44.0 36 GGCGTAA 80 0.0 44.0 9 ATTACGC 20 7.8580005E-4 44.0 38 GCTATCG 40 8.3182385E-9 44.0 22 CCGTGCC 25 4.4441273E-5 44.0 22 CCTACCG 30 2.5287409E-6 44.0 18 CCGCTAT 25 4.4441273E-5 44.0 30 CCCGTAT 25 4.4441273E-5 44.0 34 TCGGACG 25 4.4441273E-5 44.0 1 ACCTACG 25 4.4441273E-5 44.0 25 TACGATT 25 4.4441273E-5 44.0 27 CATACCC 20 7.8580005E-4 44.0 36 GTATCGA 45 4.802132E-10 44.0 44 ACTCGAC 25 4.4441273E-5 44.0 11 CAAGCCG 20 7.8580005E-4 44.0 42 CGTGTCA 80 0.0 44.0 18 AGTTACG 155 0.0 44.0 1 ACGTATG 45 4.802132E-10 44.0 1 >>END_MODULE