##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546213_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2261105 Sequences flagged as poor quality 0 Sequence length 50 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.851152865523716 31.0 31.0 34.0 30.0 34.0 2 32.226307933510384 33.0 31.0 34.0 30.0 34.0 3 32.18297867635515 33.0 31.0 34.0 30.0 34.0 4 35.92921912073964 37.0 35.0 37.0 35.0 37.0 5 35.90209831033941 37.0 35.0 37.0 35.0 37.0 6 35.95954986610529 37.0 35.0 37.0 35.0 37.0 7 36.210680176285486 37.0 35.0 37.0 35.0 37.0 8 36.11238575829075 37.0 35.0 37.0 35.0 37.0 9 37.86576209419731 39.0 38.0 39.0 35.0 39.0 10 37.39449472713562 39.0 37.0 39.0 34.0 39.0 11 37.26502307500094 39.0 37.0 39.0 34.0 39.0 12 37.014145738477424 39.0 35.0 39.0 33.0 39.0 13 36.89696984439024 39.0 35.0 39.0 33.0 39.0 14 38.04217539654284 40.0 37.0 41.0 33.0 41.0 15 38.18598163287419 40.0 37.0 41.0 33.0 41.0 16 38.23317139186371 40.0 36.0 41.0 34.0 41.0 17 38.13737884795266 40.0 36.0 41.0 33.0 41.0 18 37.972144593019785 39.0 36.0 41.0 33.0 41.0 19 37.81163944177736 39.0 36.0 41.0 34.0 41.0 20 37.619810225531324 39.0 35.0 41.0 33.0 41.0 21 37.530799763832285 39.0 35.0 41.0 33.0 41.0 22 37.44661658790724 39.0 35.0 41.0 33.0 41.0 23 37.41595237726687 39.0 35.0 41.0 33.0 41.0 24 37.35770607733829 39.0 35.0 41.0 33.0 41.0 25 37.335302871825945 39.0 35.0 41.0 33.0 41.0 26 37.30305049964508 39.0 35.0 41.0 33.0 41.0 27 37.24340576841854 39.0 35.0 41.0 33.0 41.0 28 37.177859497900364 39.0 35.0 41.0 33.0 41.0 29 37.12024076723549 39.0 35.0 41.0 33.0 41.0 30 36.941439694308755 39.0 35.0 41.0 32.0 41.0 31 36.71763098131223 39.0 35.0 41.0 31.0 41.0 32 36.46285908880835 39.0 35.0 41.0 31.0 41.0 33 36.160010702731626 39.0 35.0 41.0 30.0 41.0 34 35.7708425747588 39.0 35.0 41.0 27.0 41.0 35 35.584475731998296 39.0 35.0 41.0 25.0 41.0 36 35.45668732765617 39.0 35.0 41.0 24.0 41.0 37 35.41451370015988 39.0 35.0 41.0 24.0 41.0 38 35.32458244973144 39.0 35.0 41.0 23.0 41.0 39 35.26010954820762 39.0 35.0 41.0 23.0 41.0 40 35.143751395888295 39.0 35.0 41.0 23.0 41.0 41 35.04068055220788 39.0 35.0 41.0 23.0 41.0 42 34.969217705502395 39.0 35.0 41.0 22.0 41.0 43 34.86838382118477 38.0 35.0 41.0 22.0 41.0 44 34.77246832853848 38.0 34.0 41.0 21.0 41.0 45 34.72563768599866 38.0 34.0 40.0 21.0 41.0 46 34.6691776808242 38.0 34.0 40.0 21.0 41.0 47 34.64345264815212 38.0 34.0 40.0 21.0 41.0 48 34.563131300846266 38.0 34.0 40.0 20.0 41.0 49 34.49248884947846 38.0 34.0 40.0 20.0 41.0 50 34.371977418120785 38.0 34.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 3.0 11 2.0 12 6.0 13 5.0 14 9.0 15 29.0 16 93.0 17 279.0 18 642.0 19 1338.0 20 2400.0 21 3970.0 22 6444.0 23 10056.0 24 15894.0 25 26569.0 26 41277.0 27 52430.0 28 52303.0 29 48231.0 30 47389.0 31 51940.0 32 61186.0 33 78202.0 34 134997.0 35 223506.0 36 133104.0 37 173228.0 38 312606.0 39 782966.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.449983525754003 23.80897835350415 29.473200050417823 18.26783807032402 2 34.11292266391875 23.43898226751964 31.386379668347995 11.061715400213611 3 24.71769334020313 24.490724667806226 39.705099940073545 11.086482051917093 4 23.16562034934247 26.361093359220384 38.22936130785612 12.243924983581037 5 19.806422081239038 30.74974404107726 37.53412601360839 11.909707864075308 6 16.971923019939368 41.35278989697515 33.531525515179524 8.143761567905958 7 83.11201823886994 2.708012232956895 12.976708290857788 1.2032612373153835 8 83.66878141439695 1.8962852233752967 12.479163948600352 1.955769413627408 9 79.25664663958551 3.5881571178693603 14.512417601128652 2.642778641416476 10 35.09598183189193 27.894812492122213 22.905880089602206 14.103325586383649 11 25.480240855687818 22.673560051390805 34.07497661541591 17.771222477505468 12 27.478600065012458 20.687539941754142 35.70028813345687 16.133571859776524 13 20.21776963033561 27.412039688559354 36.364211303765195 16.00597937733984 14 14.483405237704575 31.08241324485152 37.302778950999624 17.131402566444283 15 15.022345269237828 25.888182990175157 44.38750080159922 14.701970938987795 16 17.107741568834705 22.8058847333494 42.686385638880104 17.399988058935786 17 16.899569016034196 24.04956868433797 36.71271347416418 22.338148825463655 18 17.693295976967015 24.88172818157494 40.41324927413809 17.01172656731996 19 19.094778880237758 25.980217636951846 36.36659951660803 18.558403966202366 20 20.276413523476354 25.676649248929174 37.432848098606655 16.614089128987818 21 18.53124910165605 25.945500098403212 39.26350169496773 16.25974910497301 22 17.979793065779784 22.894292834698078 37.868962299406704 21.25695180011543 23 15.745398820488212 25.633617191594375 37.97771443608325 20.64326955183417 24 14.934467881854227 24.685850502298653 44.15805546403197 16.22162615181515 25 16.055203097600508 27.041601340937284 39.015835177932914 17.88736038352929 26 15.390616534835843 28.717153781005305 36.55398577244312 19.338243911715733 27 14.809971230880475 29.384570818250367 37.62726631447898 18.178191636390174 28 14.244053239455932 27.439327231596938 40.80580070363827 17.510818825308863 29 15.140207995648144 24.392542584267428 39.54818551106649 20.919063909017936 30 16.0651097582819 28.17843488029083 38.15908593364748 17.59736942777978 31 18.29640817211054 29.415308002060943 34.984045411424944 17.304238414403578 32 18.831588979724515 26.363570024390732 36.52125841126352 18.283582584621236 33 19.064572410392262 27.52946015333211 34.76017257049098 18.645794865784648 34 15.765698629652316 28.090955528381034 35.85105512570181 20.292290716264834 35 16.097925571789016 26.65484353888917 36.46522386178439 20.78200702753742 36 20.382777447310055 28.068046375555316 34.128136464250886 17.421039712883747 37 16.547484526370955 29.088918913540063 36.27385725121125 18.08973930887774 38 16.464250886181755 28.146415137731328 36.20216663976242 19.187167336324496 39 16.861844098350144 28.68133058836277 35.10535777860825 19.35146753467884 40 18.223169644930245 26.41947189537859 35.52152597955425 19.835832480136926 41 16.15595029863717 26.939173545677885 35.67848463472505 21.226391520959883 42 17.48972294519715 27.580629824798052 33.78591440910528 21.143732820899515 43 17.33577166916176 27.010996835617984 34.39906594342147 21.25416555179879 44 16.19371944248498 28.620121577724166 34.51188688716358 20.674272092627277 45 16.230604063057662 31.23999106631492 32.84827551130974 19.68112935931768 46 18.28296341832865 29.334904836352138 33.88759035958083 18.49454138573839 47 16.530678584143594 28.780441421340452 35.560887265297275 19.12799272921868 48 16.56061969700655 28.740151386158537 35.071568989498495 19.627659927336413 49 18.426786902863864 26.691949290280636 35.25961863778993 19.62164516906557 50 17.43045988576382 27.911043494220745 34.99404052443385 19.664456095581585 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2945.0 1 7086.5 2 11228.0 3 33800.0 4 56372.0 5 40200.5 6 24029.0 7 24005.5 8 23982.0 9 24786.5 10 25591.0 11 24503.5 12 23416.0 13 21592.0 14 19768.0 15 18562.5 16 17357.0 17 17587.5 18 17818.0 19 16001.5 20 14185.0 21 13920.0 22 13655.0 23 16896.5 24 20138.0 25 26287.5 26 32437.0 27 43923.5 28 55410.0 29 64231.5 30 73053.0 31 86259.5 32 99466.0 33 118175.0 34 136884.0 35 144481.5 36 152079.0 37 151513.5 38 150948.0 39 154400.5 40 157853.0 41 162340.0 42 166827.0 43 166439.5 44 166052.0 45 158489.5 46 150927.0 47 149956.5 48 148986.0 49 140775.0 50 132564.0 51 112373.5 52 92183.0 53 80556.5 54 68930.0 55 59357.5 56 49785.0 57 46474.5 58 43164.0 59 38268.0 60 33372.0 61 29934.5 62 26497.0 63 22893.0 64 19289.0 65 16004.5 66 12720.0 67 9996.5 68 7273.0 69 6101.0 70 4929.0 71 4284.5 72 3640.0 73 2722.5 74 1805.0 75 1659.5 76 1514.0 77 1217.0 78 920.0 79 668.0 80 416.0 81 416.5 82 417.0 83 287.5 84 158.0 85 114.0 86 70.0 87 53.0 88 36.0 89 22.0 90 8.0 91 5.0 92 2.0 93 3.0 94 4.0 95 3.0 96 2.0 97 1.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2261105.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.269371316128684 #Duplication Level Percentage of deduplicated Percentage of total 1 77.03584387980952 17.155398120107975 2 9.09586377430952 4.051183356620448 3 3.500416730914192 2.338562398257523 4 1.8737891115812533 1.6691242197568723 5 1.1883444499836944 1.3231841904073802 6 0.8383983027506685 1.1202361868860027 7 0.6211969373811685 0.9683565681288225 8 0.46819012396579673 0.8341039773710918 9 0.40815737937245344 0.8180467412996852 >10 3.661162528708687 18.13210903499555 >50 0.7096589949879051 10.956847672222882 >100 0.5093716837792935 23.658794968201533 >500 0.0741705993482485 11.273744736628634 >1k 0.015235042028288882 4.323521730191191 >5k 0.0 0.0 >10k+ 2.0046107931959056E-4 1.376786098924383 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 30841 1.3639791164054744 No Hit TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2360 0.10437374646467103 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.08323364018919953 0.0 2 0.0 0.0 0.0 0.3154652260730926 0.0 3 0.0 0.0 0.0 0.4537604401387817 0.0 4 0.0 0.0 0.0 0.6868323231340429 0.0 5 0.0 0.0 0.0 1.2098951618788159 0.0 6 0.0 0.0 0.0 1.7058031360772719 0.0 7 0.0 0.0 0.0 2.027327346584966 0.0 8 0.0 0.0 0.0 2.814376156790596 0.0 9 0.0 0.0 0.0 3.123074779808987 0.0 10 0.0 0.0 0.0 3.694697946358086 0.0 11 0.0 0.0 0.0 4.28379044759089 0.0 12 4.422616375621654E-5 0.0 0.0 4.773374080372207 0.0 13 4.422616375621654E-5 0.0 0.0 4.943246775359835 0.0 14 4.422616375621654E-5 0.0 0.0 5.003173227249508 0.0 15 4.422616375621654E-5 0.0 0.0 5.097330729886494 0.0 16 4.422616375621654E-5 0.0 0.0 5.342564807914714 0.0 17 4.422616375621654E-5 0.0 0.0 5.649273253564076 0.0 18 4.422616375621654E-5 0.0 0.0 6.066945144077785 0.0 19 4.422616375621654E-5 0.0 0.0 6.283387989500708 0.0 20 4.422616375621654E-5 0.0 0.0 6.512346839266642 0.0 21 4.422616375621654E-5 0.0 0.0 6.839443546407619 0.0 22 4.422616375621654E-5 0.0 0.0 7.190599286631978 0.0 23 4.422616375621654E-5 0.0 0.0 7.568644534420118 0.0 24 4.422616375621654E-5 0.0 0.0 7.8730089933904 0.0 25 4.422616375621654E-5 0.0 0.0 8.133279967095735 0.0 26 4.422616375621654E-5 0.0 0.0 8.396912129246541 0.0 27 4.422616375621654E-5 0.0 0.0 8.656210127349238 0.0 28 4.422616375621654E-5 0.0 0.0 8.930191211819 0.0 29 4.422616375621654E-5 0.0 0.0 9.241101143025203 0.0 30 4.422616375621654E-5 0.0 0.0 9.632458466103962 0.0 31 4.422616375621654E-5 0.0 0.0 9.971407785131605 0.0 32 4.422616375621654E-5 0.0 0.0 10.264494572344052 0.0 33 4.422616375621654E-5 0.0 0.0 10.573547004672495 0.0 34 4.422616375621654E-5 0.0 0.0 10.899405379228298 0.0 35 4.422616375621654E-5 0.0 0.0 11.288462941791735 0.0 36 4.422616375621654E-5 0.0 0.0 11.618788158886916 0.0 37 4.422616375621654E-5 0.0 0.0 11.94124111883349 0.0 38 4.422616375621654E-5 0.0 0.0 12.292573763712875 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACCGTCA 20 7.858098E-4 44.000004 18 TCGACTA 40 8.3182385E-9 44.000004 44 ACGGGTC 185 0.0 44.0 5 TACGCGG 25 4.444212E-5 44.0 2 ACTACGG 35 1.4469151E-7 44.0 2 TTACGAA 165 0.0 44.0 26 TACGTCG 45 4.802132E-10 44.0 42 CGTTTTT 18460 0.0 42.772484 1 CTATGCG 135 0.0 42.37037 1 ATAACGG 125 0.0 42.24 2 CGTAAGA 120 0.0 42.166664 22 ACGGGCC 185 0.0 41.621624 5 TACGATC 270 0.0 41.555553 18 ACGTAGG 165 0.0 41.333332 2 TAGGGAC 2270 0.0 41.09251 5 GCGCGTC 75 0.0 41.066666 38 TGCGTAG 75 0.0 41.066666 1 TCGATAG 215 0.0 40.930233 1 CGACGGT 140 0.0 40.857143 28 GTTTACG 140 0.0 40.857143 1 >>END_MODULE