##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546209_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1673779 Sequences flagged as poor quality 0 Sequence length 50 %GC 36 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.899404282166284 31.0 31.0 34.0 30.0 34.0 2 32.24895819579526 33.0 31.0 34.0 30.0 34.0 3 32.09105801900968 33.0 31.0 34.0 30.0 34.0 4 35.88105657915412 37.0 35.0 37.0 35.0 37.0 5 35.88840581701646 37.0 35.0 37.0 35.0 37.0 6 35.966082738521635 37.0 35.0 37.0 35.0 37.0 7 36.18242850459947 37.0 35.0 37.0 35.0 37.0 8 36.07617074894595 37.0 35.0 37.0 35.0 37.0 9 37.859966578622384 39.0 38.0 39.0 35.0 39.0 10 37.57268611925469 39.0 37.0 39.0 35.0 39.0 11 37.35174058223935 39.0 37.0 39.0 34.0 39.0 12 36.74156564277602 39.0 35.0 39.0 33.0 39.0 13 36.541018856133334 39.0 35.0 39.0 33.0 39.0 14 37.69494300024077 40.0 35.0 41.0 33.0 41.0 15 37.89596296763193 40.0 35.0 41.0 33.0 41.0 16 38.001191913627785 40.0 35.0 41.0 34.0 41.0 17 37.91889192061795 40.0 35.0 41.0 34.0 41.0 18 37.63716237328823 39.0 36.0 41.0 34.0 41.0 19 37.31315902517596 37.0 36.0 41.0 34.0 41.0 20 36.94938459617428 37.0 35.0 41.0 34.0 41.0 21 36.84175031470702 37.0 35.0 41.0 33.0 41.0 22 36.73035329036868 37.0 35.0 41.0 33.0 41.0 23 36.717382043866 37.0 35.0 41.0 33.0 41.0 24 36.60259687808247 37.0 35.0 41.0 33.0 41.0 25 36.58938306670116 37.0 35.0 40.0 33.0 41.0 26 36.49911786442535 37.0 35.0 41.0 33.0 41.0 27 36.417521668033835 37.0 35.0 41.0 33.0 41.0 28 36.332828288561394 37.0 35.0 41.0 32.0 41.0 29 36.1881550670668 36.0 35.0 41.0 32.0 41.0 30 35.90752960815018 36.0 35.0 40.0 31.0 41.0 31 35.48060466764131 36.0 35.0 40.0 30.0 41.0 32 34.94607591563761 36.0 35.0 41.0 24.0 41.0 33 34.33716637620618 36.0 34.0 41.0 21.0 41.0 34 33.66891566927294 36.0 34.0 40.0 15.0 41.0 35 33.28959856707486 36.0 33.0 40.0 12.0 41.0 36 33.00050962522531 36.0 33.0 40.0 10.0 41.0 37 32.95562018641649 36.0 33.0 40.0 10.0 41.0 38 32.90181260488989 36.0 33.0 40.0 10.0 41.0 39 32.827894244102716 36.0 33.0 40.0 10.0 41.0 40 32.63688874098671 36.0 32.0 40.0 10.0 41.0 41 32.52789107761539 36.0 32.0 40.0 10.0 41.0 42 32.433136035283034 36.0 32.0 40.0 9.0 41.0 43 32.256462173321566 35.0 32.0 40.0 8.0 41.0 44 32.07371881234022 35.0 31.0 40.0 8.0 41.0 45 32.0046893885035 35.0 31.0 40.0 8.0 41.0 46 31.9074776299619 35.0 31.0 40.0 8.0 41.0 47 31.919400948392827 35.0 31.0 40.0 8.0 41.0 48 31.829589211000975 35.0 31.0 40.0 8.0 41.0 49 31.687923555021303 35.0 30.0 40.0 8.0 41.0 50 31.469223236759454 35.0 30.0 40.0 7.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 2.0 11 4.0 12 4.0 13 6.0 14 17.0 15 42.0 16 104.0 17 355.0 18 857.0 19 1767.0 20 3119.0 21 5524.0 22 9176.0 23 14586.0 24 23086.0 25 38314.0 26 58018.0 27 65186.0 28 55969.0 29 44343.0 30 41078.0 31 41641.0 32 48299.0 33 61186.0 34 113004.0 35 240485.0 36 79327.0 37 99070.0 38 171532.0 39 457676.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.13971139559046 23.1034085145052 26.996276091407527 23.760603998496816 2 38.53889910197225 25.374735852224216 26.151242189082307 9.935122856721227 3 23.50393928947609 23.677498642293877 42.93177295210419 9.886789116125845 4 21.001159651304025 27.12861136386584 42.062960522267275 9.80726846256286 5 19.60593363878983 29.634318509193868 40.61276906927378 10.146978782742524 6 15.465004639202668 38.252541106083896 37.87919432613266 8.403259928580773 7 74.48773105648954 4.566194222773736 19.68431913651683 1.2617555842199 8 74.66857930467523 4.436368242163391 19.030529120033172 1.8645233331282085 9 71.34938364025358 6.083300125046377 20.614011766188966 1.9533044685110759 10 39.389847763653385 27.95094214947135 25.663603139960532 6.9956069469147355 11 35.118555078059885 18.717405344433168 36.02249759376836 10.141541983738595 12 34.53884891613529 20.67871564884014 35.75501903178376 9.02741640324081 13 17.39584497117003 38.79233757861701 32.667693883123164 11.1441235670898 14 10.314085670808392 40.7216842844844 35.216417460130636 13.747812584576577 15 9.129819408655504 27.284545928703853 52.17540666957824 11.410227993062405 16 10.579413411209007 21.580328107832635 49.751968449837165 18.088290031121193 17 12.191454188396438 22.653169862926944 37.24374603815677 27.911629910519846 18 14.082145850796312 27.513070722000933 44.05002094063792 14.354762486564834 19 17.49466327394477 27.423632391134074 37.18328405362954 17.898420281291617 20 20.86846590858172 22.531588698388497 41.255327017485584 15.344618375544202 21 15.935078645388668 28.886788518675406 39.57541587031502 15.602716965620909 22 19.461290887267673 25.281892053849404 33.58382438780747 21.672992671075452 23 14.236108829182347 28.92950622513486 34.12756403324453 22.70682091243826 24 11.752925565442032 24.68820555162898 51.851469041014376 11.707399841914613 25 12.312975607890886 30.45157096605944 43.384520895530414 13.85093253051926 26 12.243133651455777 32.34943203373922 37.76968166048206 17.63775265432294 27 11.406583545378451 37.927468321684046 34.463092200344256 16.202855932593252 28 10.593871711856822 32.49712178250534 41.187695627678444 15.721310877959397 29 11.25937175696433 24.143091770179932 41.59491784757725 23.002618625278487 30 12.337530820974575 35.523029025934726 37.140387112038084 14.999053041052612 31 18.585727267458847 35.21074168095071 33.456388208957094 12.747142842633346 32 19.15587422234357 27.974123226543053 34.878380001182954 17.991622549930426 33 19.154739066507588 35.49548656065108 30.248198836286033 15.101575536555304 34 15.378673050623767 30.518545160382583 32.32177007836757 21.781011710626075 35 18.87381786962317 29.16287036699588 33.39437285328589 18.56893891009506 36 24.567879033014513 32.05106528400703 28.981842883678194 14.399212799300265 37 15.689407024463803 35.436099986915835 34.926713741778336 13.947779246842027 38 14.942593974473334 30.664980263224717 37.27481346103637 17.11761230126558 39 15.980903094136083 32.89281320891229 34.787149318996114 16.339134377955514 40 19.509624627863058 28.764669648740966 32.296318689623895 19.42938703377208 41 13.997128653185397 30.04614109748061 34.854481983583256 21.102248265750738 42 16.6455667086276 28.943845035694675 31.08247863069139 23.328109624986336 43 17.046814424126485 28.667344972066207 33.07658896425394 21.20925163955337 44 15.361884693259983 30.265285918869818 31.997055764231717 22.375773623638484 45 14.741312921239903 40.067954013044734 26.087912442443116 19.102820623272248 46 18.63555463415421 36.257235871641356 29.78356162910396 15.32364786510047 47 16.739426172750406 32.429848862962196 32.2963784346679 18.5343465296195 48 17.94920356869097 28.501134259660326 34.88417527045088 18.665486901197827 49 20.082400364683746 28.835348035792062 32.710292099494616 18.371959500029575 50 17.48522355699289 32.071378598966774 30.381191304228334 20.062206539812006 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 4935.0 1 5368.5 2 5802.0 3 23760.5 4 41719.0 5 32447.5 6 23176.0 7 25765.0 8 28354.0 9 31083.5 10 33813.0 11 33972.5 12 34132.0 13 32490.0 14 30848.0 15 28278.5 16 25709.0 17 23799.5 18 21890.0 19 20253.5 20 18617.0 21 17231.0 22 15845.0 23 15200.0 24 14555.0 25 17655.0 26 20755.0 27 24717.5 28 28680.0 29 36698.5 30 44717.0 31 52448.5 32 60180.0 33 80372.0 34 100564.0 35 108100.5 36 115637.0 37 104421.5 38 93206.0 39 109658.5 40 126111.0 41 134923.5 42 143736.0 43 150762.0 44 157788.0 45 144335.0 46 130882.0 47 120989.0 48 111096.0 49 101087.0 50 91078.0 51 74233.5 52 57389.0 53 46429.5 54 35470.0 55 27970.0 56 20470.0 57 16009.0 58 11548.0 59 9648.5 60 7749.0 61 6866.0 62 5983.0 63 5077.5 64 4172.0 65 3321.0 66 2470.0 67 1952.0 68 1434.0 69 1296.5 70 1159.0 71 1030.5 72 902.0 73 712.0 74 522.0 75 419.0 76 316.0 77 241.0 78 166.0 79 132.5 80 99.0 81 66.0 82 33.0 83 38.5 84 44.0 85 29.0 86 14.0 87 10.0 88 6.0 89 5.0 90 4.0 91 3.0 92 2.0 93 1.5 94 1.0 95 0.5 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1673779.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.099933543026857 #Duplication Level Percentage of deduplicated Percentage of total 1 79.30614091979919 19.905788666408828 2 9.150353826769413 4.593465458941876 3 3.5781228686849484 2.694319386383305 4 1.8987434838318047 1.906333410377344 5 1.1015913003450755 1.382493421511897 6 0.7332057659430617 1.1042049599120973 7 0.5072955184546533 0.8913158659921006 8 0.3711200510580367 0.7452070894433165 9 0.2702587335988573 0.6105128627478527 >10 2.04651014034019 10.700881952098056 >50 0.47553607324245517 8.610224705369712 >100 0.46214209954696134 23.758755668613084 >500 0.07411487367013597 12.666335605686873 >1k 0.024625264477496786 8.670757639507007 >5k 0.0 0.0 >10k+ 2.3908023764559992E-4 1.7594033070067059 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 29319 1.7516649450136486 No Hit GAGTATGGGGTTTTTGTCTTTGAGTTTGTTTATAAAGTGGATTACATTGC 4996 0.29848623982019135 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3951 0.236052668840988 No Hit TCAAATGGGTAATTATAGCCTTTATTCTAGTCACAATTCTATCTCTAGGC 2948 0.17612838970975261 No Hit AGGAAAGGAGAGGAAAGGAGAGGAAAGAGGGAAGAGGGAAGAGGGAAGAG 2487 0.14858592442610405 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2208 0.13191705715031674 No Hit TGTATAGGGACATTTCTATTATTTGACCTAGAAATTGCTCTTCTACTTCC 2100 0.12546459239839908 No Hit ATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCC 2055 0.12277606541843337 No Hit GGTGTTGGGTTAACAGAGAAGTTATAGGTGGATTATTTATAGTGTGATTA 1964 0.11733926641450275 No Hit CTGTCTCTTATACACATCTGACGCGAATCCGATCGTATGCCGTCTTCTGC 1809 0.1080787845946209 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGAATCCGATCGTATGC 1776 0.10610719814264608 No Hit CCTGTCTCTTATACACATCTGACGCGAATCCGATCGTATGCCGTCTTCTG 1690 0.10096912435871162 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.12498663204640517 0.0 2 0.0 0.0 0.0 0.41355519456272305 0.0 3 0.0 0.0 0.0 0.5894446040964787 0.0 4 0.0 0.0 0.0 0.8631366506569864 0.0 5 0.0 0.0 0.0 1.375091932686454 0.0 6 0.0 0.0 0.0 1.8499455423923947 0.0 7 0.0 0.0 0.0 2.126385860976867 0.0 8 0.0 0.0 0.0 2.761057463380769 0.0 9 0.0 0.0 0.0 3.009895571637594 0.0 10 0.0 0.0 0.0 3.4728001725436872 0.0 11 0.0 0.0 0.0 4.095283785971744 0.0 12 0.0 0.0 0.0 4.607418303133209 0.0 13 0.0 0.0 0.0 4.793225389970838 0.0 14 0.0 0.0 0.0 4.867130009397895 0.0 15 0.0 0.0 0.0 4.981601513700435 0.0 16 0.0 0.0 0.0 5.256129990876932 0.0 17 0.0 0.0 0.0 5.592673823724637 0.0 18 0.0 0.0 0.0 6.064360946098619 0.0 19 0.0 0.0 0.0 6.287448940391772 0.0 20 0.0 0.0 0.0 6.4886702485812044 0.0 21 0.0 0.0 0.0 6.786559037961403 0.0 22 0.0 0.0 0.0 7.074410659949731 0.0 23 0.0 0.0 0.0 7.393807665169655 0.0 24 0.0 0.0 0.0 7.6472461418144215 0.0 25 0.0 0.0 0.0 7.8543224643157785 0.0 26 0.0 0.0 0.0 8.061817002125132 0.0 27 0.0 0.0 0.0 8.283590605450302 0.0 28 0.0 0.0 0.0 8.499628684551544 0.0 29 0.0 0.0 0.0 8.73185767057658 0.0 30 0.0 0.0 0.0 9.077004789760178 0.0 31 0.0 0.0 0.0 9.398492871520075 0.0 32 0.0 0.0 0.0 9.65276777878083 0.0 33 0.0 0.0 0.0 9.877349399173966 0.0 34 0.0 0.0 0.0 10.136822125262654 0.0 35 0.0 0.0 0.0 10.528809358941652 0.0 36 0.0 0.0 0.0 10.796825626322233 0.0 37 0.0 0.0 0.0 11.070995633234734 0.0 38 0.0 0.0 0.0 11.349885498623175 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTTAG 65 0.0 44.000004 1 TGCACAT 145 0.0 44.000004 12 TCACGAG 80 0.0 44.0 1 TGTCACG 25 4.4437133E-5 44.0 1 CTAGACG 35 1.4466059E-7 44.0 1 AATCCGT 35 1.4466059E-7 44.0 20 GTACCGT 25 4.4437133E-5 44.0 9 GTACCGG 35 1.4466059E-7 44.0 2 GGTCGTT 30 2.5284116E-6 44.0 8 GGTCGGA 80 0.0 44.0 8 GTCTGCA 30 2.5284116E-6 44.0 34 CTCCGAA 20 7.857513E-4 44.0 44 CGACGTC 35 1.4466059E-7 44.0 18 TGGACCG 20 7.857513E-4 44.0 17 CATTGCG 75 0.0 44.0 1 GACCGTT 25 4.4437133E-5 44.0 40 GACCGGA 20 7.857513E-4 44.0 41 CACGCTA 40 8.3164196E-9 44.0 26 TCGGGTA 50 2.7284841E-11 44.0 5 ATAGCCG 25 4.4437133E-5 44.0 2 >>END_MODULE