##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546208_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1719699 Sequences flagged as poor quality 0 Sequence length 50 %GC 36 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.845773010276798 31.0 31.0 34.0 30.0 34.0 2 32.227104278132394 33.0 31.0 34.0 30.0 34.0 3 32.205063211643434 33.0 31.0 34.0 30.0 34.0 4 35.927332632047815 37.0 35.0 37.0 35.0 37.0 5 35.859218967970556 37.0 35.0 37.0 35.0 37.0 6 35.9581467454479 37.0 35.0 37.0 35.0 37.0 7 36.16301806304475 37.0 35.0 37.0 35.0 37.0 8 36.06493578236657 37.0 35.0 37.0 35.0 37.0 9 37.84094251377712 39.0 38.0 39.0 35.0 39.0 10 37.57335091780597 39.0 37.0 39.0 35.0 39.0 11 37.35530694615744 39.0 37.0 39.0 34.0 39.0 12 36.73798670581305 39.0 35.0 39.0 33.0 39.0 13 36.50002587662143 39.0 35.0 39.0 33.0 39.0 14 37.648072133553605 40.0 35.0 41.0 33.0 41.0 15 37.87418088863225 40.0 35.0 41.0 33.0 41.0 16 37.97303074549674 40.0 35.0 41.0 34.0 41.0 17 37.89811007624009 40.0 35.0 41.0 34.0 41.0 18 37.63375451169071 39.0 36.0 41.0 34.0 41.0 19 37.30766023589012 37.0 36.0 41.0 34.0 41.0 20 36.950987353019336 37.0 35.0 41.0 34.0 41.0 21 36.8415106364544 37.0 35.0 41.0 33.0 41.0 22 36.73622535106434 37.0 35.0 41.0 33.0 41.0 23 36.71026732003682 37.0 35.0 41.0 33.0 41.0 24 36.59806512651342 37.0 35.0 41.0 33.0 41.0 25 36.57101039193487 37.0 35.0 40.0 33.0 41.0 26 36.49727306929876 37.0 35.0 40.0 33.0 41.0 27 36.41007350704978 37.0 35.0 41.0 32.0 41.0 28 36.32310886963358 37.0 35.0 41.0 32.0 41.0 29 36.17990357614908 36.0 35.0 41.0 32.0 41.0 30 35.89931435675662 36.0 35.0 40.0 31.0 41.0 31 35.4829147426381 36.0 35.0 40.0 30.0 41.0 32 34.956843610422524 36.0 35.0 41.0 24.0 41.0 33 34.3274904503637 36.0 34.0 41.0 21.0 41.0 34 33.757738999673784 36.0 34.0 40.0 16.0 41.0 35 33.35715029199877 36.0 33.0 40.0 15.0 41.0 36 33.03511137704912 36.0 33.0 40.0 10.0 41.0 37 32.91274577702261 36.0 33.0 40.0 10.0 41.0 38 32.86829264888797 36.0 33.0 40.0 10.0 41.0 39 32.806046290659005 36.0 33.0 40.0 10.0 41.0 40 32.631180223981055 36.0 32.0 40.0 10.0 41.0 41 32.53871229790795 36.0 32.0 40.0 10.0 41.0 42 32.4277638121555 36.0 32.0 40.0 9.0 41.0 43 32.28074389762394 35.0 32.0 40.0 8.0 41.0 44 32.11861145467899 35.0 31.0 40.0 8.0 41.0 45 32.034629897441356 35.0 31.0 40.0 8.0 41.0 46 31.943366833381887 35.0 31.0 40.0 8.0 41.0 47 31.929710373734007 35.0 31.0 40.0 8.0 41.0 48 31.85435358164423 35.0 31.0 40.0 8.0 41.0 49 31.704289529737473 35.0 30.0 40.0 8.0 41.0 50 31.464581883224913 35.0 30.0 40.0 7.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 2.0 10 1.0 11 0.0 12 1.0 13 9.0 14 9.0 15 53.0 16 124.0 17 350.0 18 871.0 19 1776.0 20 3302.0 21 5767.0 22 9293.0 23 14739.0 24 23534.0 25 39215.0 26 58536.0 27 66737.0 28 57993.0 29 46413.0 30 42371.0 31 42647.0 32 49725.0 33 63665.0 34 118890.0 35 242326.0 36 82307.0 37 103303.0 38 178539.0 39 467198.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.35449575768783 23.123930408751765 26.938667755229257 23.58290607833115 2 38.568609971861356 25.38822200861895 26.168242233088463 9.874925786431229 3 23.49184363077492 23.626576511354603 42.99671047084402 9.88486938702645 4 21.050369861237346 27.12079265034172 42.00706053791971 9.82177695050122 5 19.731534413871266 29.58430516037981 40.477606837010434 10.206553588738494 6 15.42275712203124 38.281699297377045 37.83010864110521 8.465434939486503 7 74.51117899120719 4.542364681261081 19.662161808549055 1.2842945189826824 8 74.61392953069112 4.468223799630051 18.99937140162319 1.9184752680556305 9 71.27084449080915 6.128805099031866 20.60459417607384 1.995756234085151 10 39.369157044343225 27.90703489389713 25.648500115427176 7.075307946332468 11 35.056251123016295 18.865220018154343 35.92361221353272 10.154916645296648 12 34.43009503407282 20.709089206890276 35.74177806697568 9.119037692061227 13 17.480093900153456 38.73660448718061 32.645829299197125 11.13747231346881 14 10.389376280383951 40.63740224306696 35.23256104702044 13.740660429528656 15 9.203587371976143 27.268667365626193 52.10795610162011 11.419789160777555 16 10.732226976930265 21.59465115697573 49.6113564059757 18.061765460118313 17 12.284359065161985 22.7201388149903 37.10277205487705 27.89273006497067 18 14.19132069042315 27.513768397841716 43.94542300716579 14.349487904569347 19 17.54929205634242 27.468644222041185 37.0791051224662 17.9029585991502 20 20.886794723960413 22.588662318231272 41.21180508914642 15.3127378686619 21 16.002393442108183 28.809402110485614 39.578379704820435 15.609824742585769 22 19.47660608048269 25.27465562287354 33.58110925225868 21.66762904438509 23 14.332682638066313 28.873076044121674 34.09468750054515 22.69955381726686 24 11.853469706035765 24.7429928144402 51.58216641400617 11.82137106551786 25 12.353731670484196 30.40409978723021 43.304496891607194 13.937671650678404 26 12.321574880255207 32.34536974203044 37.675023361646424 17.658032016067928 27 11.520737059217922 37.89180548456445 34.43067653118366 16.156780925033974 28 10.672507223647859 32.4628903081295 41.14092059133604 15.723681876886594 29 11.352742543898671 24.19597848228091 41.435507027683336 23.015771946137086 30 12.49677995974877 35.46178720811026 36.99507878995103 15.046354042189941 31 18.567609796830727 35.20959191114259 33.47713756884199 12.745660723184695 32 19.231679497400417 27.98355991368257 34.824117476372315 17.960643112544695 33 19.18260114124623 35.53557919147479 30.20546037417013 15.076359293108851 34 15.472300675874093 30.598203522825795 32.13690302779731 21.792592773502804 35 18.9910559929383 29.181792860262174 33.12905339829819 18.698097748501336 36 24.661815817768108 32.09224404968543 28.787654118540512 14.458286014005939 37 15.817768109419147 35.42044276353013 34.75125588838512 14.010533238665603 38 15.031874764130235 30.631930355254028 37.14998962027657 17.186205260339165 39 16.03745771789133 32.88121932966176 34.72828675250727 16.35303619993964 40 19.622445555879256 28.73886651094174 32.16464043998397 19.47404749319503 41 14.143056430224126 30.023102880213337 34.74811580398663 21.085724885575907 42 16.836202149329623 28.929597563294507 30.97687444139934 23.257325845976535 43 17.142767426160045 28.676588170371677 33.00065883622657 21.17998556724171 44 15.461135931346126 30.21906740656359 31.851504245801156 22.468292416289128 45 14.794856541755271 39.955538730905815 26.06636393927077 19.183240788068147 46 18.734150569372897 36.155280662488025 29.73049353404288 15.3800752340962 47 16.793229512839165 32.362465757088884 32.20278665045453 18.641518079617423 48 17.955235189413962 28.557672011206613 34.8131271809776 18.673965618401827 49 20.135384157343815 28.862260197860206 32.597216140731604 18.405139504064376 50 17.593776585321034 32.00856661543677 30.287044418819804 20.11061238042239 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 5044.0 1 5447.0 2 5850.0 3 24404.5 4 42959.0 5 33321.5 6 23684.0 7 25999.5 8 28315.0 9 31237.5 10 34160.0 11 34416.5 12 34673.0 13 33001.0 14 31329.0 15 28722.5 16 26116.0 17 24295.5 18 22475.0 19 20801.0 20 19127.0 21 17905.0 22 16683.0 23 15773.0 24 14863.0 25 18178.5 26 21494.0 27 25681.5 28 29869.0 29 37603.0 30 45337.0 31 53531.5 32 61726.0 33 82082.5 34 102439.0 35 110194.5 36 117950.0 37 106373.0 38 94796.0 39 111473.5 40 128151.0 41 137899.0 42 147647.0 43 154830.5 44 162014.0 45 148922.5 46 135831.0 47 125732.5 48 115634.0 49 105509.5 50 95385.0 51 77762.5 52 60140.0 53 48665.5 54 37191.0 55 29230.0 56 21269.0 57 16653.0 58 12037.0 59 9979.0 60 7921.0 61 6998.5 62 6076.0 63 5128.5 64 4181.0 65 3336.0 66 2491.0 67 1978.5 68 1466.0 69 1335.0 70 1204.0 71 1041.5 72 879.0 73 712.0 74 545.0 75 441.0 76 337.0 77 275.0 78 213.0 79 150.0 80 87.0 81 69.0 82 51.0 83 45.0 84 39.0 85 25.0 86 11.0 87 6.5 88 2.0 89 3.0 90 4.0 91 4.0 92 4.0 93 2.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1719699.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.13851560413985 #Duplication Level Percentage of deduplicated Percentage of total 1 79.38862568261055 19.957122055135233 2 8.994635318225361 4.522235606015113 3 3.6843399886366446 2.778565148858961 4 1.8363758788405662 1.8465505474119837 5 1.0951734532638844 1.376551747205694 6 0.7410966641918972 1.11780420341784 7 0.501746499014906 0.8829213536366127 8 0.3759369257815547 0.7560397019945582 9 0.2892260062377461 0.6543641223837566 >10 2.062493133143664 10.724490518632933 >50 0.47719479226115596 8.66305351813217 >100 0.4539547062071902 23.383569938506835 >500 0.07387799204682688 12.665112411301504 >1k 0.0248583180786493 8.591340496858956 >5k 2.3232072970700277E-4 0.30369031102304156 >10k+ 2.3232072970700277E-4 1.7765883194847933 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 30420 1.768914211149742 No Hit GAGTATGGGGTTTTTGTCTTTGAGTTTGTTTATAAAGTGGATTACATTGC 5200 0.3023784976324345 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 4018 0.23364553913213884 No Hit TCAAATGGGTAATTATAGCCTTTATTCTAGTCACAATTCTATCTCTAGGC 2969 0.17264649220590347 No Hit AGGAAAGGAGAGGAAAGGAGAGGAAAGAGGGAAGAGGGAAGAGGGAAGAG 2533 0.1472932181736455 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2155 0.12531262738421084 No Hit GGTGTTGGGTTAACAGAGAAGTTATAGGTGGATTATTTATAGTGTGATTA 2097 0.12193994414138754 No Hit TGTATAGGGACATTTCTATTATTTGACCTAGAAATTGCTCTTCTACTTCC 2043 0.11879985974289688 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGAATCCGATCGTATGC 1949 0.11333378690107979 No Hit ATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCC 1948 0.11327563718999663 No Hit CTGTCTCTTATACACATCTGACGCGAATCCGATCGTATGCCGTCTTCTGC 1860 0.1081584626146785 No Hit TTTGCAGGGAATCTAAGTATAGGTAATATAACAATTAAAAAGATTTAGAG 1758 0.10222719208419612 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.12665007073912354 0.0 2 0.0 0.0 0.0 0.4186197700876723 0.0 3 0.0 0.0 0.0 0.5940574484255675 0.0 4 0.0 0.0 0.0 0.8789910327330539 0.0 5 0.0 0.0 0.0 1.4104793920331407 0.0 6 0.0 0.0 0.0 1.9002162587755183 0.0 7 0.0 0.0 0.0 2.188871424592327 0.0 8 0.0 0.0 0.0 2.84945214249703 0.0 9 0.0 0.0 0.0 3.105717919240518 0.0 10 0.0 0.0 0.0 3.583882993477347 0.0 11 5.814971108316048E-5 0.0 0.0 4.234403811364663 0.0 12 5.814971108316048E-5 0.0 0.0 4.7581001093796065 0.0 13 5.814971108316048E-5 0.0 0.0 4.958832912038677 0.0 14 5.814971108316048E-5 0.0 0.0 5.035997578646031 0.0 15 5.814971108316048E-5 0.0 0.0 5.1568908279879215 0.0 16 5.814971108316048E-5 0.0 0.0 5.440661418073744 0.0 17 5.814971108316048E-5 0.0 0.0 5.786361450463134 0.0 18 5.814971108316048E-5 0.0 0.0 6.286623414911563 0.0 19 5.814971108316048E-5 0.0 0.0 6.515500677734883 0.0 20 5.814971108316048E-5 0.0 0.0 6.734434339962982 0.0 21 5.814971108316048E-5 0.0 0.0 7.046581989057388 0.0 22 5.814971108316048E-5 0.0 0.0 7.3472159953573275 0.0 23 5.814971108316048E-5 0.0 0.0 7.691927482658302 0.0 24 5.814971108316048E-5 0.0 0.0 7.960637297573587 0.0 25 5.814971108316048E-5 0.0 0.0 8.17393043782662 0.0 26 5.814971108316048E-5 0.0 0.0 8.387979524323734 0.0 27 5.814971108316048E-5 0.0 0.0 8.6125537085269 0.0 28 5.814971108316048E-5 0.0 0.0 8.836953443596816 0.0 29 5.814971108316048E-5 0.0 0.0 9.076472103548353 0.0 30 5.814971108316048E-5 0.0 0.0 9.442989732505515 0.0 31 5.814971108316048E-5 0.0 0.0 9.773512690302198 0.0 32 5.814971108316048E-5 0.0 0.0 10.036233084975917 0.0 33 5.814971108316048E-5 0.0 0.0 10.26702928826498 0.0 34 5.814971108316048E-5 0.0 0.0 10.532308270226359 0.0 35 5.814971108316048E-5 0.0 0.0 10.933832025255583 0.0 36 5.814971108316048E-5 0.0 0.0 11.212659889899337 0.0 37 5.814971108316048E-5 0.0 0.0 11.50875821873479 0.0 38 5.814971108316048E-5 0.0 0.0 11.808519979368482 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTTAGCG 45 4.802132E-10 44.0 1 CTATGCG 70 0.0 44.0 1 CAGCGAT 95 0.0 44.0 21 TCGTTAT 20 7.8575726E-4 44.0 21 TCGTTAG 30 2.5284535E-6 44.0 1 TCTTGCG 20 7.8575726E-4 44.0 1 ACACGGA 70 0.0 44.0 23 CTCGTTA 20 7.8575726E-4 44.0 20 GGTCGTT 25 4.4437656E-5 44.0 8 CCTAGGT 40 8.3164196E-9 44.0 11 ACGTTAG 25 4.4437656E-5 44.0 1 CAGCCGA 20 7.8575726E-4 44.0 36 TAGACCG 20 7.8575726E-4 44.0 11 CATTGCG 35 1.4466423E-7 44.0 1 TAGCGCG 20 7.8575726E-4 44.0 1 CACGCTA 60 0.0 44.0 26 ACTTCGT 20 7.8575726E-4 44.0 37 ATTCGCG 45 4.802132E-10 44.0 1 CTAAGCG 40 8.3164196E-9 44.0 1 TCGATTG 20 7.8575726E-4 44.0 1 >>END_MODULE