##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546207_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1166441 Sequences flagged as poor quality 0 Sequence length 50 %GC 40 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.931760800589142 31.0 31.0 34.0 30.0 34.0 2 32.278428141671974 33.0 31.0 34.0 30.0 34.0 3 32.18419791485382 33.0 31.0 34.0 30.0 34.0 4 35.94229712432948 37.0 35.0 37.0 35.0 37.0 5 35.93800543705168 37.0 35.0 37.0 35.0 37.0 6 35.99996913688734 37.0 35.0 37.0 35.0 37.0 7 36.21445405296967 37.0 35.0 37.0 35.0 37.0 8 36.11902445130101 37.0 36.0 37.0 35.0 37.0 9 37.906940856845736 39.0 38.0 39.0 35.0 39.0 10 37.55506279357464 39.0 37.0 39.0 35.0 39.0 11 37.376754589387716 39.0 37.0 39.0 35.0 39.0 12 36.70319887589685 39.0 35.0 39.0 33.0 39.0 13 36.45686579947036 39.0 35.0 39.0 33.0 39.0 14 37.48269222361011 40.0 35.0 41.0 33.0 41.0 15 37.70859820599585 40.0 35.0 41.0 33.0 41.0 16 37.85019473766783 40.0 35.0 41.0 33.0 41.0 17 37.779162426560795 40.0 35.0 41.0 34.0 41.0 18 37.59819485083258 39.0 36.0 41.0 34.0 41.0 19 37.38364049274674 38.0 35.0 41.0 34.0 41.0 20 37.08437374886514 38.0 35.0 41.0 33.0 41.0 21 36.97265956872229 38.0 35.0 41.0 33.0 41.0 22 36.889655799136 38.0 35.0 41.0 33.0 41.0 23 36.85491593659688 38.0 35.0 41.0 33.0 41.0 24 36.80431843530877 38.0 35.0 41.0 33.0 41.0 25 36.75987726768864 38.0 35.0 41.0 33.0 41.0 26 36.72371684465824 38.0 35.0 41.0 33.0 41.0 27 36.65191895689538 38.0 35.0 41.0 33.0 41.0 28 36.5388510863387 37.0 35.0 41.0 32.0 41.0 29 36.452366643490755 37.0 35.0 41.0 32.0 41.0 30 36.23751137005644 37.0 35.0 41.0 32.0 41.0 31 35.890946048707136 37.0 35.0 41.0 31.0 41.0 32 35.52008631383842 37.0 35.0 41.0 29.0 41.0 33 35.114624743128886 37.0 35.0 41.0 25.0 41.0 34 34.658336769712314 37.0 34.0 40.0 23.0 41.0 35 34.378612377308414 37.0 34.0 41.0 21.0 41.0 36 34.16358992868049 37.0 34.0 40.0 18.0 41.0 37 34.1229586408571 37.0 34.0 40.0 18.0 41.0 38 34.03496104817989 37.0 34.0 40.0 18.0 41.0 39 33.97972550690519 36.0 34.0 40.0 18.0 41.0 40 33.79073523650146 36.0 34.0 40.0 18.0 41.0 41 33.677770242987 36.0 34.0 40.0 17.0 41.0 42 33.60965878257023 36.0 33.0 40.0 16.0 41.0 43 33.50673030183267 36.0 33.0 40.0 15.0 41.0 44 33.35484606593904 36.0 33.0 40.0 15.0 41.0 45 33.322482663075114 35.0 33.0 40.0 15.0 41.0 46 33.25125745751392 35.0 33.0 40.0 15.0 41.0 47 33.213523015737614 35.0 33.0 40.0 15.0 41.0 48 33.13326006201771 35.0 33.0 40.0 15.0 41.0 49 33.02898303471843 35.0 33.0 40.0 14.0 41.0 50 32.90248628091776 35.0 33.0 40.0 13.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 0.0 11 0.0 12 2.0 13 6.0 14 10.0 15 22.0 16 71.0 17 170.0 18 381.0 19 771.0 20 1486.0 21 2639.0 22 4252.0 23 6731.0 24 10738.0 25 18030.0 26 27792.0 27 34121.0 28 32549.0 29 27981.0 30 27333.0 31 29178.0 32 34960.0 33 45883.0 34 89402.0 35 177038.0 36 63157.0 37 80000.0 38 135554.0 39 316182.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.943013834390253 22.247674764518738 26.62303536998442 20.186276031106587 2 36.39215356799015 23.26950098633364 28.86944131764916 11.468904128027049 3 25.559886869545913 23.16362336371921 39.586742921416516 11.689746845318366 4 23.113127882164637 25.76581241571584 38.8656605863477 12.255399115771823 5 19.218545987323836 29.87360698055024 39.14154252122482 11.766304510901108 6 16.11174504325551 40.54041310276302 34.90052218672012 8.447319667261354 7 78.30486068305213 3.6590791990336413 16.55823140647491 1.477828711439327 8 78.64384053715533 2.905504864798134 16.051219050084832 2.3994355479617058 9 75.6139401821438 3.5055352135255875 17.87694362595279 3.003580978377818 10 42.91130027150966 24.037135183005397 23.294277207334105 9.757287338150837 11 36.820722179690186 19.78308375648661 31.31902942369138 12.07716464013182 12 35.818356865027894 18.22586826080359 34.362132332454024 11.593642541714496 13 18.710676322248617 35.28914021369276 32.561526901060574 13.438656562998041 14 12.395397624054711 36.75839583828072 35.865851766184484 14.980354771480084 15 10.87153143622352 22.55999231851418 53.517151746209194 13.051324499053102 16 13.699192672411206 18.88848214354605 48.36164023726875 19.05068494677399 17 13.189265466491662 19.985837260521535 36.40878535648181 30.41611191650499 18 15.613562966322341 23.948318003225193 44.22881225882835 16.20930677162411 19 20.27989413952356 24.799196873223764 35.2080388120788 19.712870175173883 20 21.63418466943463 21.959447584575646 38.80230547451607 17.60406227147365 21 17.505214580077347 26.15357313400335 38.47018408989396 17.871028196025346 22 18.678698708293005 23.12710201373237 33.255175358205 24.939023919769625 23 13.793496627776285 26.259793680091835 34.88937717381334 25.057332518318542 24 14.5314679439423 22.358267584901423 48.001570589511175 15.108693881645108 25 13.641581528769994 27.026570568078455 42.14169426486209 17.190153638289463 26 14.17559910874189 27.39135541360429 37.39100391704338 21.04204156061044 27 14.992785747414572 32.15216200390761 34.613152315462166 18.241899933215652 28 12.41228660515191 27.930688307424035 41.03859517969619 18.618429907727865 29 12.769012749037456 23.234351330243022 40.093841008675106 23.902794912044413 30 15.531861448628778 30.208643214701812 38.366106815518314 15.893388521151092 31 20.938993056656958 30.42202734643244 32.76968144981186 15.869298147098739 32 21.7940727392127 24.207310957005113 35.679644319772706 18.318971984009476 33 23.061775091924925 28.223459223398358 31.08764180957288 17.62712387510384 34 17.742517624123295 25.198359797023596 35.08938729005582 21.969735288797292 35 19.33145354115639 24.58375520064881 35.00185607330332 21.082935184891475 36 26.374673043900206 26.15905990958823 31.82732774310917 15.638939303402402 37 17.125855486904182 30.309548446942454 36.93800200781694 15.626594058336426 38 17.551252056469206 28.29281549602595 35.14751281890812 19.00841962859673 39 17.41965517330066 29.294666425477157 34.742091541706785 18.543586859515397 40 20.144182174666355 24.50196795208673 33.78267739216986 21.571172481077053 41 15.625308095308721 25.919527862960923 35.152570940150426 23.302593101579934 42 18.16765700108278 25.13954842122319 32.5767012647875 24.116093312906525 43 18.863020075597483 23.822122164773017 34.78581428464877 22.529043474980732 44 16.292808637556462 26.63015103207106 34.315580470851074 22.7614598595214 45 16.63478907205765 34.14703358335312 29.382540565703707 19.835636778885515 46 20.788020997204313 29.723663691519757 32.9537456245108 16.534569686765128 47 17.89194652794269 28.290672224313102 33.52557051749724 20.291810730246965 48 18.00614004480295 26.795097223091435 35.00631407846603 20.192448653639573 49 20.131579736994844 24.774077728749248 35.05080839922465 20.043534135031262 50 18.44653951635788 27.866990272118347 34.24493823519578 19.44153197632799 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2155.0 1 4011.0 2 5867.0 3 17750.5 4 29634.0 5 21832.5 6 14031.0 7 14680.5 8 15330.0 9 16205.5 10 17081.0 11 16943.0 12 16805.0 13 15942.0 14 15079.0 15 14066.5 16 13054.0 17 11266.5 18 9479.0 19 9331.5 20 9184.0 21 8419.5 22 7655.0 23 10187.0 24 12719.0 25 12188.5 26 11658.0 27 13233.0 28 14808.0 29 18782.0 30 22756.0 31 29821.5 32 36887.0 33 51753.0 34 66619.0 35 67861.0 36 69103.0 37 63950.0 38 58797.0 39 63445.5 40 68094.0 41 76466.5 42 84839.0 43 88357.5 44 91876.0 45 90340.0 46 88804.0 47 85844.5 48 82885.0 49 78815.5 50 74746.0 51 63317.5 52 51889.0 53 43977.5 54 36066.0 55 31943.5 56 27821.0 57 25770.5 58 23720.0 59 22751.0 60 21782.0 61 19993.5 62 18205.0 63 15781.0 64 13357.0 65 12090.0 66 10823.0 67 9101.0 68 7379.0 69 6325.5 70 5272.0 71 4821.5 72 4371.0 73 3681.5 74 2992.0 75 2192.5 76 1393.0 77 1046.0 78 699.0 79 540.5 80 382.0 81 280.5 82 179.0 83 116.5 84 54.0 85 68.5 86 83.0 87 49.0 88 15.0 89 11.0 90 7.0 91 5.5 92 4.0 93 3.0 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1166441.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.315642052190235 #Duplication Level Percentage of deduplicated Percentage of total 1 78.7134114693799 19.926805494655873 2 8.796393833748233 4.453727152905273 3 3.3569061716462603 2.54946705132555 4 1.7641972127020948 1.7864714058495181 5 1.0648399153246304 1.347855306962145 6 0.7090650417915684 1.0770262073829993 7 0.5348863784434953 0.9478694466687523 8 0.4127230831479546 0.8358679871719973 9 0.34597701051619906 0.7882767140863457 >10 3.0973080630703533 18.216440071323817 >50 0.7238001560989291 12.449274295305834 >100 0.4137945209508287 21.123414224938212 >500 0.05648839677453708 10.028457244799283 >1k 0.009868454858202261 3.044693065113615 >5k 0.0 0.0 >10k+ 3.4029154683456076E-4 1.424354331510865 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 16534 1.4174741800056754 No Hit ATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCC 1889 0.16194561062239754 No Hit CCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTG 1597 0.13691219701639432 No Hit GGAATAGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 1462 0.12533852976704352 No Hit GGTGTTGGGTTAACAGAGAAGTTATAGGTGGATTATTTATAGTGTGATTA 1444 0.12379537413379674 No Hit CTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGC 1434 0.12293806544865964 TruSeq Adapter, Index 21 (95% over 21bp) GTTGTAGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 1397 0.1197660233136524 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1392 0.11933736897108384 No Hit AAATACGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 1365 0.11702263552121367 No Hit TGTGATGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 1313 0.11256463035850077 No Hit GCGGAAGGGATTTACTTATAGGTGTAATATTTGTTAATGGTTTTAAAATG 1260 0.10802089432727416 No Hit GGAAAAGGGCATAATATGAGTAAGGGAATCAATTCTCTACAAGTGTCTTA 1235 0.10587762261443143 No Hit AAAGCAGGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAA 1213 0.1039915435071298 No Hit GCGATAGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 1182 0.10133388658320482 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.14634259255290238 0.0 2 0.0 0.0 0.0 0.5095842824454901 0.0 3 0.0 0.0 0.0 0.6956202671202402 0.0 4 0.0 0.0 0.0 0.9939636895479497 0.0 5 0.0 0.0 0.0 1.6025671251267746 0.0 6 0.0 0.0 0.0 2.146358024109235 0.0 7 0.0 0.0 0.0 2.460475926343467 0.0 8 0.0 0.0 0.0 3.3429037559550805 0.0 9 0.0 0.0 0.0 3.696200665100078 0.0 10 0.0 0.0 0.0 4.352641925309553 0.0 11 0.0 0.0 0.0 5.0233145096923035 0.0 12 0.0 0.0 0.0 5.5769644585538405 0.0 13 0.0 0.0 0.0 5.79326343981393 0.0 14 0.0 0.0 0.0 5.870764144950323 0.0 15 0.0 0.0 0.0 5.995502558637771 0.0 16 0.0 0.0 0.0 6.290931131536015 0.0 17 0.0 0.0 0.0 6.627253328715297 0.0 18 0.0 0.0 0.0 7.179017198469532 0.0 19 0.0 0.0 0.0 7.408947387823302 0.0 20 0.0 0.0 0.0 7.668368995945787 0.0 21 0.0 0.0 0.0 8.023380522461059 0.0 22 0.0 0.0 0.0 8.377620471159707 0.0 23 0.0 0.0 0.0 8.783213210098067 0.0 24 0.0 0.0 0.0 9.085243059871866 0.0 25 0.0 0.0 0.0 9.341492625859345 0.0 26 0.0 0.0 0.0 9.60091423398183 0.0 27 0.0 0.0 0.0 9.886569487869512 0.0 28 0.0 0.0 0.0 10.143333439068071 0.0 29 0.0 0.0 0.0 10.471511203738551 0.0 30 0.0 0.0 0.0 10.863044080240664 0.0 31 0.0 0.0 0.0 11.208796672956455 0.0 32 0.0 0.0 0.0 11.494280465107108 0.0 33 0.0 0.0 0.0 11.794681428379146 0.0 34 0.0 0.0 0.0 12.105713019346885 0.0 35 0.0 0.0 0.0 12.562144163313874 0.0 36 0.0 0.0 0.0 12.870003712146607 0.0 37 0.0 0.0 0.0 13.16311755159498 0.0 38 0.0 0.0 0.0 13.486322925891665 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACGATT 95 0.0 44.000004 13 TTACGAT 95 0.0 44.000004 12 TCGACAG 65 0.0 44.000004 1 ACGTTCC 25 4.44288E-5 44.0 25 CTATACG 35 1.4461148E-7 44.0 1 CCGTGAT 20 7.856531E-4 44.0 33 AGGAACG 30 2.5277495E-6 44.0 1 CGCGACA 20 7.856531E-4 44.0 28 TCGATAG 30 2.5277495E-6 44.0 1 TAGCCGT 20 7.856531E-4 44.0 44 AGTATCG 30 2.5277495E-6 44.0 1 CGTTAGT 20 7.856531E-4 44.0 35 ACTAGTG 40 8.312782E-9 44.0 27 GTTCGGT 30 2.5277495E-6 44.0 9 GTATGCG 25 4.44288E-5 44.0 7 CGCTAGC 20 7.856531E-4 44.0 21 AGGCACG 20 7.856531E-4 44.0 10 CCGAGTA 35 1.4461148E-7 44.0 25 ACTACGG 60 0.0 44.0 2 GTATCGG 30 2.5277495E-6 44.0 2 >>END_MODULE