##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546206_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1200822 Sequences flagged as poor quality 0 Sequence length 50 %GC 40 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.866060082177043 31.0 31.0 34.0 30.0 34.0 2 32.244031171980524 33.0 31.0 34.0 30.0 34.0 3 32.27539718626075 34.0 31.0 34.0 30.0 34.0 4 35.98202148195153 37.0 35.0 37.0 35.0 37.0 5 35.902482632729914 37.0 35.0 37.0 35.0 37.0 6 35.98759100016489 37.0 35.0 37.0 35.0 37.0 7 36.1912681479853 37.0 35.0 37.0 35.0 37.0 8 36.097524862136105 37.0 35.0 37.0 35.0 37.0 9 37.877277398315485 39.0 38.0 39.0 35.0 39.0 10 37.54775645349602 39.0 37.0 39.0 35.0 39.0 11 37.36412890503338 39.0 37.0 39.0 34.0 39.0 12 36.678884963799796 39.0 35.0 39.0 33.0 39.0 13 36.38896439272432 39.0 35.0 39.0 33.0 39.0 14 37.39698639765094 40.0 35.0 41.0 33.0 41.0 15 37.662717705038716 40.0 35.0 41.0 33.0 41.0 16 37.79745124589656 40.0 35.0 41.0 33.0 41.0 17 37.742556348901005 40.0 35.0 41.0 33.0 41.0 18 37.57514685773578 39.0 36.0 41.0 33.0 41.0 19 37.36415888449745 38.0 35.0 41.0 34.0 41.0 20 37.06619882047464 38.0 35.0 41.0 33.0 41.0 21 36.94549816708888 38.0 35.0 41.0 33.0 41.0 22 36.879441749068555 38.0 35.0 41.0 33.0 41.0 23 36.830232957091056 38.0 35.0 41.0 33.0 41.0 24 36.78793193329236 38.0 35.0 41.0 33.0 41.0 25 36.72153241696105 38.0 35.0 41.0 33.0 41.0 26 36.70417763831775 38.0 35.0 41.0 33.0 41.0 27 36.62374523451436 38.0 35.0 41.0 33.0 41.0 28 36.50431204624832 37.0 35.0 41.0 32.0 41.0 29 36.41784211148696 37.0 35.0 41.0 32.0 41.0 30 36.21138436837433 37.0 35.0 40.0 31.0 41.0 31 35.8725389774671 37.0 35.0 40.0 31.0 41.0 32 35.50104928124235 37.0 35.0 41.0 29.0 41.0 33 35.09506071674237 37.0 35.0 41.0 25.0 41.0 34 34.70026615101988 37.0 34.0 41.0 23.0 41.0 35 34.39851701584415 37.0 34.0 41.0 21.0 41.0 36 34.17205547533273 37.0 34.0 40.0 19.0 41.0 37 34.079346480993856 37.0 34.0 40.0 18.0 41.0 38 34.00257407009532 37.0 34.0 40.0 18.0 41.0 39 33.945177553375935 36.0 34.0 40.0 18.0 41.0 40 33.77276065894862 36.0 34.0 40.0 18.0 41.0 41 33.688808999168906 36.0 34.0 40.0 18.0 41.0 42 33.604873994647 36.0 33.0 40.0 16.0 41.0 43 33.52207820975965 36.0 33.0 40.0 15.0 41.0 44 33.36886232930443 36.0 33.0 40.0 15.0 41.0 45 33.33562842786025 35.0 33.0 40.0 15.0 41.0 46 33.279654270158275 35.0 33.0 40.0 15.0 41.0 47 33.225309829433506 35.0 33.0 40.0 15.0 41.0 48 33.15033951743056 35.0 33.0 40.0 15.0 41.0 49 33.04860254059303 35.0 33.0 40.0 15.0 41.0 50 32.894514757391185 35.0 33.0 40.0 13.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 3.0 11 1.0 12 2.0 13 3.0 14 10.0 15 21.0 16 68.0 17 153.0 18 395.0 19 816.0 20 1533.0 21 2730.0 22 4498.0 23 6943.0 24 10941.0 25 18138.0 26 28295.0 27 35185.0 28 33639.0 29 29357.0 30 28548.0 31 30857.0 32 36244.0 33 48024.0 34 94105.0 35 179513.0 36 65709.0 37 82607.0 38 139982.0 39 322500.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.10710829748289 22.161902430168666 26.780655251152965 19.95033402119548 2 36.405062532165466 23.096512222460948 29.044937551110824 11.453487694262764 3 25.542170280024852 23.21060073849413 39.56531442628466 11.681914555196357 4 23.128407041176793 25.66325400434036 38.87412122695954 12.334217727523313 5 19.18519147717147 29.829150365333078 39.191986822360015 11.793671335135432 6 16.212727614917117 40.43846631723936 34.86969759048385 8.479108477359675 7 78.27396566685154 3.6701526121273593 16.527178882465513 1.5287028385555894 8 78.62539160674937 2.9016790165403363 16.071907410090756 2.4010219666195325 9 75.59621659163473 3.5030170999531984 17.869093004625164 3.031673303786906 10 42.96740066387857 23.915201420360386 23.300872235851774 9.816525679909262 11 36.84834221891337 19.791775966796077 31.281322294228453 12.07855952006209 12 35.91556450498076 18.197118307292836 34.28243319992472 11.60488398780169 13 18.896888964392726 35.17107448064743 32.50648305910451 13.425553495855338 14 12.444891915704408 36.61466895176804 35.92122729263787 15.019211839889676 15 10.840490930379357 22.493675165844728 53.50401641542211 13.161817488353812 16 13.863420223813355 18.91920700986491 48.198900419879045 19.018472346442685 17 13.259583851728232 19.96265891197863 36.415638620878035 30.362118615415106 18 15.682840587530874 23.919864892548603 44.19114573184035 16.206148788080167 19 20.335403581879746 24.806091160888126 35.22062387264724 19.637881384584894 20 21.716707388772026 21.92531449290569 38.764029972801964 17.59394814552032 21 17.462121779914092 26.08504840850684 38.55184198823805 17.900987823341012 22 18.57602542258553 23.035720531435967 33.40170316666417 24.986550879314336 23 13.78830501106742 26.225285679309675 34.89393099060477 25.09247831901814 24 14.601081592442512 22.355519802268777 47.80100631067719 15.242392294611523 25 13.724098992190351 26.929886361175924 42.05227752322992 17.2937371234038 26 14.18803119862894 27.270070002048598 37.437355411543095 21.10454338777937 27 15.038365386376999 32.031142001062605 34.57306744879757 18.357425163762823 28 12.401754797963395 27.883982805111835 40.94661823317694 18.767644163747832 29 12.870267200301127 23.414461094150507 40.005096508891405 23.71017519665696 30 15.614970411934493 30.093552583147208 38.26320637030301 16.02827063461529 31 20.886276234112966 30.34005039881015 32.78962244196059 15.984050925116295 32 21.842454585275753 24.150373660709082 35.67031583365395 18.33685592036122 33 22.99974517455543 28.180196565352734 31.124013384165178 17.696044875926656 34 17.756503461795337 25.107634603629847 34.98403593538426 22.151825999190557 35 19.320681999497012 24.58141173296292 34.88751871634597 21.2103875511941 36 26.418986327698864 26.03841368662466 31.803214797863465 15.739385187813015 37 17.254930372694705 30.22188134461227 36.85808554473519 15.665102737957831 38 17.586370003214466 28.25939231626336 35.1570007877937 18.99723689272848 39 17.46603576550063 29.179512034256533 34.76060565179518 18.593846548447644 40 20.113472271494025 24.346239492614227 33.911187503226955 21.629100732664792 41 15.624297356310926 25.923409131411653 35.16965878373314 23.28263472854428 42 18.156229649356856 25.121208638749128 32.76205799027666 23.96050372161736 43 18.88964392724317 23.702597054351102 34.78533870965055 22.62242030875517 44 16.391938189007195 26.44871596289875 34.33589657751107 22.823449270582984 45 16.71871434733874 33.893366377364835 29.411103394174994 19.976815881121432 46 20.743707227216024 29.54692702165683 33.1404654478349 16.568900303292246 47 17.924971394594703 28.11407519182693 33.61780513681462 20.34314827676375 48 18.012578050701936 26.7248601374725 35.073391393562076 20.189170418263487 49 20.174680343964386 24.637206846643384 35.08754836270488 20.10056444668735 50 18.36633572669388 27.779554338611383 34.25486874824079 19.599241186453945 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2297.0 1 4121.0 2 5945.0 3 18458.0 4 30971.0 5 22500.0 6 14029.0 7 14856.0 8 15683.0 9 16464.5 10 17246.0 11 17209.0 12 17172.0 13 16296.0 14 15420.0 15 14349.5 16 13279.0 17 11613.5 18 9948.0 19 9649.5 20 9351.0 21 8580.0 22 7809.0 23 10323.5 24 12838.0 25 12427.5 26 12017.0 27 13482.0 28 14947.0 29 19061.5 30 23176.0 31 30628.5 32 38081.0 33 52801.5 34 67522.0 35 68843.0 36 70164.0 37 65203.5 38 60243.0 39 65136.0 40 70029.0 41 78228.5 42 86428.0 43 90661.5 44 94895.0 45 93249.0 46 91603.0 47 89114.0 48 86625.0 49 82712.0 50 78799.0 51 66455.0 52 54111.0 53 45815.0 54 37519.0 55 33134.5 56 28750.0 57 26666.5 58 24583.0 59 23616.0 60 22649.0 61 20584.5 62 18520.0 63 16249.0 64 13978.0 65 12472.0 66 10966.0 67 9241.0 68 7516.0 69 6403.5 70 5291.0 71 4926.0 72 4561.0 73 3782.5 74 3004.0 75 2219.5 76 1435.0 77 1079.0 78 723.0 79 535.0 80 347.0 81 265.5 82 184.0 83 128.5 84 73.0 85 70.5 86 68.0 87 43.0 88 18.0 89 11.0 90 4.0 91 3.0 92 2.0 93 2.0 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1200822.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.32441460984794 #Duplication Level Percentage of deduplicated Percentage of total 1 78.53163054298514 19.887675718579537 2 8.959530198266172 4.537897149006912 3 3.324690781740549 2.5258754341901137 4 1.7669964577713657 1.789926036429389 5 1.086985565639196 1.376363656958354 6 0.7443329776910215 1.1309878160898073 7 0.5381246048908943 0.9539383424212329 8 0.40491906644490194 0.8203470657666612 9 0.3300317712551992 0.7522075268720243 >10 3.1234696852216985 18.270444940158548 >50 0.7117209726349619 12.308525980135727 >100 0.4120837602643966 21.146190195405172 >500 0.055561855316546574 9.989956106992318 >1k 0.009591034548689587 3.0581190618024467 >5k 0.0 0.0 >10k+ 3.3072532926515814E-4 1.4515449691917457 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 17331 1.4432613659643145 No Hit ATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCC 2007 0.1671355121741607 No Hit CCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTG 1692 0.1409034811154359 No Hit CTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGC 1543 0.12849531404321374 TruSeq Adapter, Index 21 (95% over 21bp) AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1461 0.12166665833903775 No Hit GTTGTAGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 1455 0.12116700060458586 No Hit GGAATAGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 1438 0.11975130369030547 No Hit TGTGATGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 1397 0.11633697583821748 No Hit GGTGTTGGGTTAACAGAGAAGTTATAGGTGGATTATTTATAGTGTGATTA 1386 0.115420936658389 No Hit AAATACGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 1379 0.11483800263486178 No Hit GGAAAAGGGCATAATATGAGTAAGGGAATCAATTCTCTACAAGTGTCTTA 1361 0.11333902943150607 No Hit AGCATGGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 1289 0.10734313661808327 No Hit GCGATAGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 1275 0.10617726857102884 No Hit TGCAATGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAATT 1258 0.10476157165674846 No Hit GCGGAAGGGATTTACTTATAGGTGTAATATTTGTTAATGGTTTTAAAATG 1232 0.10259638814079024 No Hit TCGGAAGGGTTTCAACCATGAAAAATACTGAAAATTTTTGTTTTGTCTGG 1206 0.10043120462483199 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.1551437265473151 0.0 2 0.0 0.0 0.0 0.5234747531274411 0.0 3 0.0 0.0 0.0 0.7175917829620043 0.0 4 0.0 0.0 0.0 1.0173864236331447 0.0 5 0.0 0.0 0.0 1.6373783957988777 0.0 6 0.0 0.0 0.0 2.1872517325631944 0.0 7 0.0 0.0 0.0 2.526102952810658 0.0 8 0.0 0.0 0.0 3.421073231503087 0.0 9 0.0 0.0 0.0 3.7939844539823553 0.0 10 0.0 0.0 0.0 4.498668412137686 0.0 11 0.0 0.0 0.0 5.2041018568946935 0.0 12 0.0 0.0 0.0 5.764218177215274 0.0 13 0.0 0.0 0.0 5.986815697913596 0.0 14 0.0 0.0 0.0 6.071091302457816 0.0 15 0.0 0.0 0.0 6.197837814430448 0.0 16 0.0 0.0 0.0 6.50312869018056 0.0 17 0.0 0.0 0.0 6.870293848713631 0.0 18 0.0 0.0 0.0 7.454060635131602 0.0 19 0.0 0.0 0.0 7.696311360051698 0.0 20 0.0 0.0 0.0 7.977035730524591 0.0 21 0.0 0.0 0.0 8.350363334449236 0.0 22 0.0 0.0 0.0 8.724190596108333 0.0 23 0.0 0.0 0.0 9.144069645626079 0.0 24 0.0 0.0 0.0 9.448611034774514 0.0 25 0.0 0.0 0.0 9.70793339895505 0.0 26 0.0 0.0 0.0 9.985326717864929 0.0 27 0.0 0.0 0.0 10.287119989473878 0.0 28 0.0 0.0 0.0 10.561931743422422 0.0 29 0.0 0.0 0.0 10.896036215192593 0.0 30 0.0 0.0 0.0 11.311168516233048 0.0 31 0.0 0.0 0.0 11.660512548904 0.0 32 0.0 0.0 0.0 11.958641663793635 0.0 33 0.0 0.0 0.0 12.284751611812576 0.0 34 0.0 0.0 0.0 12.605698429908847 0.0 35 0.0 0.0 0.0 13.079956896192774 0.0 36 0.0 0.0 0.0 13.409814277220104 0.0 37 0.0 0.0 0.0 13.72443209734665 0.0 38 0.0 0.0 0.0 14.056371385600864 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GATACTA 20 7.856622E-4 44.000004 9 AGATCGA 20 7.856622E-4 44.000004 15 ACCGGAC 20 7.856622E-4 44.000004 37 ACGTTAG 80 0.0 44.000004 1 ACGCACG 20 7.856622E-4 44.000004 11 TAGCGAT 20 7.856622E-4 44.000004 40 CAACCCG 20 7.856622E-4 44.000004 23 CGACCGG 20 7.856622E-4 44.000004 2 CGATTCA 20 7.856622E-4 44.000004 10 CTAAGCG 20 7.856622E-4 44.000004 1 CACGACA 20 7.856622E-4 44.000004 16 CGTTCTA 20 7.856622E-4 44.000004 31 TAGCCGT 20 7.856622E-4 44.000004 44 ATCGTAC 40 8.312782E-9 44.000004 34 CTTATCG 40 8.312782E-9 44.000004 31 AGCGATA 20 7.856622E-4 44.000004 41 CGAATAT 40 8.312782E-9 44.000004 14 GCGATTC 20 7.856622E-4 44.000004 9 TACTCGT 20 7.856622E-4 44.000004 40 ACGTACC 20 7.856622E-4 44.000004 15 >>END_MODULE