FastQCFastQC Report
Thu 26 May 2016
SRR1546201_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1546201_1.fastq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences1735393
Sequences flagged as poor quality0
Sequence length50
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT244941.4114382160121655No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA39910.2299767257330184No Hit
ATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCC33590.19355846197374313No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA28940.16676337866984595No Hit
GAAGATGGGAAGCTATACTATATAGGTGGCTATCTATCCCTACCAAGGCT23760.13691423210765516No Hit
TATAGGGTTTATCTATCTTGTTGATTTTCTCAAAGAACCAACTCCTCGTT23050.13282293981824292No Hit
GCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCTTCTG22240.1281554091782092TruSeq Adapter, Index 13 (95% over 21bp)
TAATTAGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGG21650.12475560290954267No Hit
TTAGCAGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT21260.12250827334211904No Hit
TTGTTAGGGATCAATATTTTCACAACCTCAATCTTATTAATCTTCATTCT21020.12112530130062758No Hit
CTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCTTCTGC20740.11951183391888753No Hit
TTTTTTTTGGGAGGTATCCCAATAGGAGGTTTCCTCCTATGGTTTTCAAA20570.11853222872283108No Hit
TTAGTATGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAA19110.110119148803758No Hit
TCTATAGGGATTATTTTGGAATTTTACAATATAGGTGATATTATGGCATT18830.10850568142201795No Hit
GGCTAAGGGGCTATTAATGATATTAAAATCCCAACTATACCAAAGAATAT18680.10764132389608579No Hit
ATTTGTGGGATGCCACAACTAGATACATCAACATGATTTATCACAATTAT18350.10573973733903502No Hit
TGTATAGGGGTTTATCTTAGGGGCTATTAATATCTTATCATTTGGTTTTA18320.10556686583384858No Hit
ATTAAAGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGG18090.10424151762741926No Hit
GGTAAAGGGATGCCACAACTAGATACATCAACATGATTTATCACAATTAT17990.1036652792767978No Hit
AGTTAAGGGAGGTTTCCTCCTATGGTTTTCAAAACAATCACCATCATGCT17950.10343478393654924No Hit
AGTGTTGGGTTAACAGAGAAGTTATAGGTGGATTATTTATAGTGTGATTA17650.1017060688846849No Hit
AGTAAAGGGATGCCACAACTAGATACATCAACATGATTTATCACAATTAT17440.10049596834837987No Hit
TGTTGAGGGGATATTAAAATCCCAACTATACCAAAGAATATCCCAATTAT17430.10043834451331772No Hit
AATGATAGATAGCCACCTATATAGTATAGCTTCCCATCTTCTTTGAGAGT17410.10032309684319343No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGC17390.10020784917306916No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCACGCC351.4466605E-744.042
TCACGAG207.8575936E-444.01
CTAGATT207.8575936E-444.028
CAGCGTG207.8575936E-444.01
AAGTAGT454.802132E-1044.015
AGACTAC207.8575936E-444.023
AATCCGG302.5284662E-644.02
ATCTCGC454.802132E-1044.019
ACCGGAC254.4437824E-544.041
GCGACAA254.4437824E-544.08
CTCCGAT502.7284841E-1144.021
CTCCGAC254.4437824E-544.016
CGACGTC351.4466605E-744.018
CCTAGTT408.3164196E-944.034
TGCCAAC207.8575936E-444.021
ACGTTGA207.8575936E-444.021
ACGTTAG302.5284662E-644.01
CGTGCCG254.4437824E-544.040
GAGTCGA302.5284662E-644.044
TCCGAGT207.8575936E-444.04