##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546201_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1735393 Sequences flagged as poor quality 0 Sequence length 50 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.872709524586075 31.0 31.0 34.0 30.0 34.0 2 32.218235869339104 33.0 31.0 34.0 30.0 34.0 3 32.06940560437895 33.0 31.0 34.0 30.0 34.0 4 35.86576066631593 37.0 35.0 37.0 35.0 37.0 5 35.876773157434656 37.0 35.0 37.0 35.0 37.0 6 35.92940446342702 37.0 35.0 37.0 35.0 37.0 7 36.16640207722401 37.0 35.0 37.0 35.0 37.0 8 36.04760708381329 37.0 35.0 37.0 35.0 37.0 9 37.83282633962451 39.0 38.0 39.0 35.0 39.0 10 37.5017364942696 39.0 37.0 39.0 35.0 39.0 11 37.346557235162294 39.0 37.0 39.0 34.0 39.0 12 36.63167247995123 39.0 35.0 39.0 33.0 39.0 13 36.309392166500615 39.0 35.0 39.0 33.0 39.0 14 37.4503262373422 40.0 35.0 41.0 33.0 41.0 15 37.66926511746907 40.0 35.0 41.0 33.0 41.0 16 37.83200519997487 40.0 35.0 41.0 34.0 41.0 17 37.77201072033827 40.0 35.0 41.0 34.0 41.0 18 37.55298367574377 39.0 36.0 41.0 34.0 41.0 19 37.22806476688566 37.0 35.0 41.0 34.0 41.0 20 36.855753134880686 37.0 35.0 41.0 33.0 41.0 21 36.73171149128756 37.0 35.0 41.0 33.0 41.0 22 36.64262273732809 37.0 35.0 41.0 33.0 41.0 23 36.611222933364374 36.0 35.0 41.0 33.0 41.0 24 36.54961210515428 36.0 35.0 40.0 33.0 41.0 25 36.509265624558815 36.0 35.0 40.0 33.0 41.0 26 36.42812953607627 36.0 35.0 40.0 33.0 41.0 27 36.3265784753079 36.0 35.0 40.0 32.0 41.0 28 36.22245566278071 36.0 35.0 40.0 32.0 41.0 29 36.10304812800328 36.0 35.0 40.0 31.0 41.0 30 35.82886009105719 36.0 35.0 40.0 31.0 41.0 31 35.43222659074919 36.0 35.0 40.0 30.0 41.0 32 34.946325126354665 36.0 35.0 40.0 25.0 41.0 33 34.408391067614076 36.0 34.0 40.0 21.0 41.0 34 33.83235728160711 36.0 34.0 40.0 18.0 41.0 35 33.506640282633384 36.0 33.0 40.0 15.0 41.0 36 33.275539315878305 36.0 33.0 40.0 15.0 41.0 37 33.21623632226245 36.0 33.0 40.0 13.0 41.0 38 33.17856474009057 35.0 33.0 40.0 12.0 41.0 39 33.11005057644003 36.0 33.0 40.0 12.0 41.0 40 32.89422280716818 35.0 33.0 40.0 10.0 41.0 41 32.78780483729046 35.0 33.0 40.0 10.0 41.0 42 32.65307109110155 35.0 33.0 40.0 10.0 41.0 43 32.461305306636596 35.0 32.0 40.0 10.0 41.0 44 32.30098715391845 35.0 32.0 40.0 10.0 41.0 45 32.23002685846952 35.0 32.0 40.0 10.0 41.0 46 32.10621052407149 35.0 31.0 40.0 10.0 41.0 47 32.06764980612461 35.0 31.0 40.0 10.0 41.0 48 31.99720812519124 35.0 31.0 40.0 8.0 41.0 49 31.887929708141037 35.0 31.0 40.0 8.0 41.0 50 31.664178085309782 35.0 31.0 40.0 8.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 3.0 12 4.0 13 8.0 14 10.0 15 42.0 16 126.0 17 316.0 18 813.0 19 1687.0 20 3009.0 21 5118.0 22 8672.0 23 13869.0 24 21953.0 25 35854.0 26 54597.0 27 63278.0 28 56820.0 29 47715.0 30 44929.0 31 45407.0 32 53028.0 33 67820.0 34 124099.0 35 269897.0 36 83803.0 37 104161.0 38 176928.0 39 451426.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.171136451512712 22.155961214549098 27.481844170167797 23.191058163770396 2 37.616666657062694 23.69774454547183 27.734351815410115 10.951236982055361 3 22.08992429956788 24.45624708639484 43.01913168947898 10.434696924558299 4 21.258412359621133 26.699370113858933 41.499360663549986 10.542856862969945 5 17.74422277835626 30.2217999035377 40.54804877050904 11.485928547596998 6 15.42636163681656 39.48010623530232 36.4757723466673 8.617759781213822 7 74.0406927998442 4.931274933113134 19.36351016743758 1.664522099605104 8 74.12436260835442 4.150356720350952 18.59290662115152 3.1323740501431088 9 70.80229089318672 5.190582190892783 20.93692898380943 3.070197932111055 10 41.607866344972 23.233296434870947 26.354664332517185 8.804172887639862 11 36.140977864956234 19.126503333826978 33.765953879034896 10.966564922181892 12 34.488614394549245 19.397796349299554 35.48383564990754 10.629753606243659 13 16.182443976666956 38.78078337298814 33.33873076588416 11.698041884460753 14 10.108027403591002 40.55692284110861 36.00175867944609 13.333291075854287 15 8.284866886059815 24.156257401061314 56.17759204975472 11.381283663124146 16 9.121910714172525 19.618149894577193 53.32769003908625 17.932249352164035 17 9.412853457401292 21.158953620303876 36.87516314748302 32.55302977481181 18 12.26794161322536 24.34416872719897 47.096363763136075 16.291525896439595 19 17.760818442854152 25.70956549899648 36.274953281475725 20.25466277667364 20 20.576837638506092 22.344506402872433 40.024420981299336 17.05423497732214 21 13.97994575292167 27.961274477884835 41.6759200941804 16.382859675013094 22 18.29574050373604 23.470188020811424 34.01068230654382 24.223389168908714 23 12.61668106302146 26.608324454460746 34.607031375601956 26.167963106915842 24 11.320721012473832 22.89827145781964 51.36876776614865 14.41223976355788 25 11.402892601272448 26.120365819154507 45.51989088350592 16.956850696067114 26 11.76165859836936 30.25810291962685 38.266433021223435 19.713805460780353 27 11.85835139360364 36.11988754132349 34.7877973461919 17.23396371888097 28 10.76119357402041 31.636234558973097 42.513136793798296 15.089435073208202 29 11.513415116921642 22.899769677531257 40.338874249233456 25.24794095631364 30 13.300214994528616 32.89410525454465 36.30376519900679 17.50191455191994 31 18.741806610952104 32.893586640029085 31.816251419707235 16.548355329311573 32 20.51252943857674 26.542460410984713 35.35792757029675 17.58708258014179 33 19.640450318746243 31.480534956635182 29.785875591292577 19.093139133325995 34 15.326326659148675 29.139220914225195 31.916171149704997 23.618281276921135 35 16.21079490351753 25.81409513579921 33.48797649869511 24.48713346198815 36 25.727428887865745 29.138183685194075 29.555149755703752 15.579237671236429 37 14.186642449289586 33.05107258125393 35.65025328556701 17.11203168388947 38 13.524371712920358 31.20371005299664 34.38708119716975 20.884837036913254 39 14.743922558175585 31.854052655508003 35.32122118736217 18.080803598954244 40 18.13502762774772 25.717978578915552 33.92176872904293 22.225225064293795 41 12.907681430085288 26.63552290461008 35.40696545393464 25.04983021136999 42 17.426484951823593 25.24408015936448 32.464346692651176 24.86508819616075 43 16.504100223983848 25.196713366943396 34.74423372688492 23.55495268218784 44 14.382563488500876 30.013893106633482 31.827603315214482 23.77594008965116 45 14.718971437593675 37.38478834477262 26.530878020137227 21.365362197496474 46 20.47104027733199 32.48762672201628 30.281440572827016 16.759892427824706 47 16.788128107005157 30.50473293369283 31.43132420149211 21.2758147578099 48 17.592672092142816 27.202944808467016 33.434098212912005 21.770284886478166 49 19.876131804150415 25.088726300036935 34.38356614323096 20.651575752581692 50 17.332039486156738 30.80864103981058 31.661992413245876 20.197327060786808 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 4924.0 1 5327.0 2 5730.0 3 22124.0 4 38518.0 5 30021.5 6 21525.0 7 24126.5 8 26728.0 9 29997.0 10 33266.0 11 33291.0 12 33316.0 13 31383.0 14 29450.0 15 27182.5 16 24915.0 17 22457.0 18 19999.0 19 18245.0 20 16491.0 21 16906.0 22 17321.0 23 16243.5 24 15166.0 25 17851.0 26 20536.0 27 23978.5 28 27421.0 29 30153.5 30 32886.0 31 46069.0 32 59252.0 33 72470.0 34 85688.0 35 86185.5 36 86683.0 37 88951.5 38 91220.0 39 104067.0 40 116914.0 41 134288.0 42 151662.0 43 162260.0 44 172858.0 45 167124.5 46 161391.0 47 150598.5 48 139806.0 49 123821.5 50 107837.0 51 87052.5 52 66268.0 53 52950.5 54 39633.0 55 32483.5 56 25334.0 57 21228.5 58 17123.0 59 15479.0 60 13835.0 61 12444.5 62 11054.0 63 8949.5 64 6845.0 65 5645.0 66 4445.0 67 3534.5 68 2624.0 69 2580.5 70 2537.0 71 2063.0 72 1589.0 73 1390.5 74 1192.0 75 974.5 76 757.0 77 539.5 78 322.0 79 210.0 80 98.0 81 78.0 82 58.0 83 69.0 84 80.0 85 80.0 86 80.0 87 44.5 88 9.0 89 5.5 90 2.0 91 2.0 92 2.0 93 2.0 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1735393.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.00308493961198 #Duplication Level Percentage of deduplicated Percentage of total 1 78.93334918785843 18.157105359363598 2 8.72131866892788 4.012344682535435 3 3.568586949564904 2.462655261456969 4 1.9922032454311507 1.8330728188649368 5 1.20022613538443 1.3804451869495136 6 0.8211948269152215 1.1334008613300477 7 0.5499390628746276 0.885520648244097 8 0.41311662986946796 0.7602365541482892 9 0.3313163883567242 0.6859169120929677 >10 2.257553569430731 10.595425829625164 >50 0.5744145288155574 9.57668059832066 >100 0.527632753645182 24.009461466598733 >500 0.07695692210888662 12.5336931481893 >1k 0.03193963760728301 10.557033462758467 >5k 0.0 0.0 >10k+ 2.5149320950616544E-4 1.4170072095218584 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 24494 1.4114382160121655 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3991 0.2299767257330184 No Hit ATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCC 3359 0.19355846197374313 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2894 0.16676337866984595 No Hit GAAGATGGGAAGCTATACTATATAGGTGGCTATCTATCCCTACCAAGGCT 2376 0.13691423210765516 No Hit TATAGGGTTTATCTATCTTGTTGATTTTCTCAAAGAACCAACTCCTCGTT 2305 0.13282293981824292 No Hit GCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCTTCTG 2224 0.1281554091782092 TruSeq Adapter, Index 13 (95% over 21bp) TAATTAGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGG 2165 0.12475560290954267 No Hit TTAGCAGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 2126 0.12250827334211904 No Hit TTGTTAGGGATCAATATTTTCACAACCTCAATCTTATTAATCTTCATTCT 2102 0.12112530130062758 No Hit CTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCTTCTGC 2074 0.11951183391888753 No Hit TTTTTTTTGGGAGGTATCCCAATAGGAGGTTTCCTCCTATGGTTTTCAAA 2057 0.11853222872283108 No Hit TTAGTATGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAA 1911 0.110119148803758 No Hit TCTATAGGGATTATTTTGGAATTTTACAATATAGGTGATATTATGGCATT 1883 0.10850568142201795 No Hit GGCTAAGGGGCTATTAATGATATTAAAATCCCAACTATACCAAAGAATAT 1868 0.10764132389608579 No Hit ATTTGTGGGATGCCACAACTAGATACATCAACATGATTTATCACAATTAT 1835 0.10573973733903502 No Hit TGTATAGGGGTTTATCTTAGGGGCTATTAATATCTTATCATTTGGTTTTA 1832 0.10556686583384858 No Hit ATTAAAGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGG 1809 0.10424151762741926 No Hit GGTAAAGGGATGCCACAACTAGATACATCAACATGATTTATCACAATTAT 1799 0.1036652792767978 No Hit AGTTAAGGGAGGTTTCCTCCTATGGTTTTCAAAACAATCACCATCATGCT 1795 0.10343478393654924 No Hit AGTGTTGGGTTAACAGAGAAGTTATAGGTGGATTATTTATAGTGTGATTA 1765 0.1017060688846849 No Hit AGTAAAGGGATGCCACAACTAGATACATCAACATGATTTATCACAATTAT 1744 0.10049596834837987 No Hit TGTTGAGGGGATATTAAAATCCCAACTATACCAAAGAATATCCCAATTAT 1743 0.10043834451331772 No Hit AATGATAGATAGCCACCTATATAGTATAGCTTCCCATCTTCTTTGAGAGT 1741 0.10032309684319343 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGC 1739 0.10020784917306916 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.13870057099458163 0.0 2 0.0 0.0 0.0 0.5490975243071742 0.0 3 0.0 0.0 0.0 0.7865077247632093 0.0 4 0.0 0.0 0.0 1.3167046311700001 0.0 5 0.0 0.0 0.0 2.197196830919567 0.0 6 0.0 0.0 0.0 3.0992403449823756 0.0 7 0.0 0.0 0.0 3.656174710858002 0.0 8 0.0 0.0 0.0 5.090489589389838 0.0 9 0.0 0.0 0.0 5.60512806032985 0.0 10 0.0 0.0 0.0 6.496799284081473 0.0 11 0.0 0.0 0.0 7.293275932310434 0.0 12 0.0 0.0 0.0 8.01144178868994 0.0 13 0.0 0.0 0.0 8.272477761521454 0.0 14 0.0 0.0 0.0 8.357472918238116 0.0 15 0.0 0.0 0.0 8.495597250882076 0.0 16 0.0 0.0 0.0 8.848427992967586 0.0 17 0.0 0.0 0.0 9.241653043431661 0.0 18 0.0 0.0 0.0 9.933254311847518 0.0 19 0.0 0.0 0.0 10.182016407810796 0.0 20 0.0 0.0 0.0 10.426860082989847 0.0 21 0.0 0.0 0.0 10.782917759838838 0.0 22 0.0 0.0 0.0 11.091781515771931 0.0 23 0.0 0.0 0.0 11.530241276759789 0.0 24 0.0 0.0 0.0 11.82936660456738 0.0 25 0.0 0.0 0.0 12.04891341615415 0.0 26 0.0 0.0 0.0 12.327755154019867 0.0 27 0.0 0.0 0.0 12.551566129401236 0.0 28 0.0 0.0 0.0 12.769902840451701 0.0 29 0.0 0.0 0.0 13.033589509696075 0.0 30 0.0 0.0 0.0 13.460294008331253 0.0 31 0.0 0.0 0.0 13.856457874383498 0.0 32 0.0 0.0 0.0 14.156101816706649 0.0 33 0.0 0.0 0.0 14.440302571233143 0.0 34 0.0 0.0 0.0 14.72692352683225 0.0 35 0.0 0.0 0.0 15.164000315778615 0.0 36 0.0 0.0 0.0 15.47660962099075 0.0 37 0.0 0.0 0.0 15.792964475481922 0.0 38 0.0 0.0 0.0 16.083215732689943 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACGCC 35 1.4466605E-7 44.0 42 TCACGAG 20 7.8575936E-4 44.0 1 CTAGATT 20 7.8575936E-4 44.0 28 CAGCGTG 20 7.8575936E-4 44.0 1 AAGTAGT 45 4.802132E-10 44.0 15 AGACTAC 20 7.8575936E-4 44.0 23 AATCCGG 30 2.5284662E-6 44.0 2 ATCTCGC 45 4.802132E-10 44.0 19 ACCGGAC 25 4.4437824E-5 44.0 41 GCGACAA 25 4.4437824E-5 44.0 8 CTCCGAT 50 2.7284841E-11 44.0 21 CTCCGAC 25 4.4437824E-5 44.0 16 CGACGTC 35 1.4466605E-7 44.0 18 CCTAGTT 40 8.3164196E-9 44.0 34 TGCCAAC 20 7.8575936E-4 44.0 21 ACGTTGA 20 7.8575936E-4 44.0 21 ACGTTAG 30 2.5284662E-6 44.0 1 CGTGCCG 25 4.4437824E-5 44.0 40 GAGTCGA 30 2.5284662E-6 44.0 44 TCCGAGT 20 7.8575936E-4 44.0 4 >>END_MODULE