##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546200_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1784950 Sequences flagged as poor quality 0 Sequence length 50 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.806828762710442 31.0 31.0 34.0 30.0 34.0 2 32.18556037984257 33.0 31.0 34.0 30.0 34.0 3 32.16995658141685 33.0 31.0 34.0 30.0 34.0 4 35.9039760217373 37.0 35.0 37.0 35.0 37.0 5 35.83990139779826 37.0 35.0 37.0 35.0 37.0 6 35.918225160368635 37.0 35.0 37.0 35.0 37.0 7 36.14851060253789 37.0 35.0 37.0 35.0 37.0 8 36.02905123392812 37.0 35.0 37.0 35.0 37.0 9 37.80617608336368 39.0 38.0 39.0 35.0 39.0 10 37.493944928429364 39.0 37.0 39.0 35.0 39.0 11 37.33418863273481 39.0 37.0 39.0 34.0 39.0 12 36.606750889380656 39.0 35.0 39.0 33.0 39.0 13 36.22728871957197 39.0 35.0 39.0 32.0 39.0 14 37.35730804784448 40.0 35.0 41.0 33.0 41.0 15 37.613321941791085 40.0 35.0 41.0 33.0 41.0 16 37.77954900697498 40.0 35.0 41.0 33.0 41.0 17 37.72647413092804 40.0 35.0 41.0 33.0 41.0 18 37.51645312193619 39.0 36.0 41.0 33.0 41.0 19 37.202671223283566 37.0 35.0 41.0 33.0 41.0 20 36.83894394800975 37.0 35.0 41.0 33.0 41.0 21 36.71535337124289 37.0 35.0 41.0 33.0 41.0 22 36.630271996414464 37.0 35.0 41.0 33.0 41.0 23 36.587107201882404 36.0 35.0 40.0 33.0 41.0 24 36.52734642426959 36.0 35.0 40.0 33.0 41.0 25 36.48228745903246 36.0 35.0 40.0 33.0 41.0 26 36.411866999075606 36.0 35.0 40.0 33.0 41.0 27 36.30188464662876 36.0 35.0 40.0 32.0 41.0 28 36.192419395501275 36.0 35.0 40.0 32.0 41.0 29 36.07234264265105 36.0 35.0 40.0 31.0 41.0 30 35.80271548222639 36.0 35.0 40.0 31.0 41.0 31 35.41806773298972 36.0 35.0 40.0 30.0 41.0 32 34.95143561444298 36.0 35.0 40.0 25.0 41.0 33 34.401770357713104 36.0 34.0 40.0 21.0 41.0 34 33.90246225384465 36.0 34.0 40.0 18.0 41.0 35 33.544880248746466 36.0 33.0 40.0 15.0 41.0 36 33.30143141264461 36.0 33.0 40.0 15.0 41.0 37 33.1803030897224 36.0 33.0 40.0 14.0 41.0 38 33.148282024706575 35.0 33.0 40.0 12.0 41.0 39 33.09639653771814 36.0 33.0 40.0 12.0 41.0 40 32.889159360206165 35.0 33.0 40.0 10.0 41.0 41 32.81654892293902 35.0 33.0 40.0 10.0 41.0 42 32.66824953079918 35.0 33.0 40.0 10.0 41.0 43 32.50229138071094 35.0 32.0 40.0 10.0 41.0 44 32.336998235244685 35.0 32.0 40.0 10.0 41.0 45 32.26291548782879 35.0 32.0 40.0 10.0 41.0 46 32.15507437183114 35.0 31.0 40.0 10.0 41.0 47 32.10260511498922 35.0 31.0 40.0 10.0 41.0 48 32.0380845401832 35.0 31.0 40.0 9.0 41.0 49 31.918369702232557 35.0 31.0 40.0 8.0 41.0 50 31.667813104008516 35.0 31.0 40.0 8.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 2.0 12 2.0 13 5.0 14 24.0 15 41.0 16 114.0 17 361.0 18 879.0 19 1753.0 20 3192.0 21 5457.0 22 9084.0 23 14088.0 24 22073.0 25 36866.0 26 54591.0 27 64113.0 28 58960.0 29 49828.0 30 46655.0 31 47781.0 32 55859.0 33 71046.0 34 131015.0 35 272607.0 36 87111.0 37 108444.0 38 183249.0 39 459747.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.422728927981176 22.161573153309615 27.524972688310594 22.890725230398612 2 37.59035267094316 23.689291016555085 27.712316871621052 11.008039440880697 3 22.088125717807223 24.497604974929267 42.917224572116865 10.497044735146643 4 21.331129723521666 26.725902686349755 41.371747107762125 10.571220482366453 5 17.843805148603604 30.26745847222611 40.40959130507857 11.479145074091711 6 15.49886551444018 39.4896775820051 36.3042662259447 8.707190677610017 7 74.2484103196168 4.9262444326171595 19.181937869408106 1.6434073783579373 8 74.28908372783552 4.187512255245245 18.421692484383318 3.1017115325359255 9 70.94977450348749 5.19134989775624 20.768144765959832 3.090730832796437 10 41.721280708143084 23.289784027563798 26.116753970699456 8.872181293593657 11 36.21524412448528 19.207036611669796 33.54939914283313 11.028320121011793 12 34.549651250735316 19.385472982436482 35.339533320261076 10.725342446567131 13 16.29933611585759 38.71783523347993 33.25471301717135 11.728115633491134 14 10.183366480853806 40.60898064371551 35.86010812627804 13.347544749152638 15 8.359057676685621 24.16230146502703 56.03462281856635 11.444018039721 16 9.221658869996359 19.601557466595704 53.25891481554105 17.917868847866885 17 9.473150508417602 21.177343903190565 36.75722009019861 32.59228549819323 18 12.341690243424186 24.249474775203787 47.00047620381523 16.408358777556796 19 17.81254376873302 25.627104400683493 36.31037283957534 20.249978991008152 20 20.632398666629317 22.36858175299028 39.919549567214766 17.079470013165636 21 13.982016302977673 28.02201742345724 41.552144317768004 16.44382195579708 22 18.269923527269672 23.435502395025072 33.97193198689039 24.32264209081487 23 12.673576290652399 26.56701868399675 34.50735314714698 26.25205187820387 24 11.338020672847978 22.852292781310403 51.265301549063004 14.544384996778623 25 11.505812487744754 26.08493235104625 45.38805008543657 17.021205075772432 26 11.69371691083784 30.260511498921538 38.24286394576879 19.802907644471833 27 11.923583293649683 36.141460545113304 34.68226000728312 17.25269615395389 28 10.722765343567046 31.67203563125017 42.45183338468865 15.153365640494131 29 11.565702120507577 22.87559875626768 40.24230370598616 25.31639541723858 30 13.33101767556514 32.82971511807054 36.30376201014034 17.535505196223983 31 18.736995434045774 32.847082551331965 31.839491302277374 16.576430712344884 32 20.529650690495533 26.542144037648114 35.32782430880417 17.60038096305219 33 19.680775371859156 31.449900557438582 29.73013249670859 19.13919157399367 34 15.402728367741394 29.150564441580997 31.722289139751815 23.724418050925795 35 16.203815232919688 25.73226140788257 33.274265385585025 24.789657973612705 36 25.81484075184179 29.076220622426398 29.378413961175383 15.73052466455643 37 14.201294153897868 33.0446791226645 35.52883834281072 17.225188380626907 38 13.505028152049078 31.240763046583936 34.18527129611474 21.068937505252247 39 14.784951959438638 31.802963668450097 35.21605647217009 18.196027899941175 40 18.19221826941931 25.760049301100874 33.75595955068769 22.291772878792123 41 12.946861256617833 26.603378245889242 35.38933863693661 25.06042186055632 42 17.520322698114793 25.20569203619149 32.39267206364324 24.881313202050478 43 16.55329280932239 25.171629457407768 34.66018655984762 23.614891173422226 44 14.361466707750917 30.00106445558699 31.748508361578754 23.888960475083334 45 14.729768340849883 37.2997002717163 26.474635143841564 21.49589624359226 46 20.502703156951174 32.375920894142695 30.183310456875546 16.93806549203059 47 16.818734418331047 30.518053726995152 31.322894198717048 21.34031765595675 48 17.629961623574893 27.22457211686602 33.32894478836943 21.81652147118967 49 19.90375080534469 25.128042802319396 34.208073055267654 20.760133337068265 50 17.455558979243115 30.710776212218832 31.492310708983446 20.34135409955461 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 5169.0 1 5599.0 2 6029.0 3 22609.5 4 39190.0 5 30529.0 6 21868.0 7 24404.5 8 26941.0 9 29968.0 10 32995.0 11 33448.5 12 33902.0 13 31876.0 14 29850.0 15 27485.0 16 25120.0 17 22811.0 18 20502.0 19 18638.0 20 16774.0 21 17328.5 22 17883.0 23 16670.0 24 15457.0 25 18159.0 26 20861.0 27 24611.0 28 28361.0 29 31050.0 30 33739.0 31 47075.5 32 60412.0 33 73708.5 34 87005.0 35 87760.5 36 88516.0 37 90834.5 38 93153.0 39 106455.0 40 119757.0 41 137434.0 42 155111.0 43 166880.0 44 178649.0 45 172479.0 46 166309.0 47 155906.5 48 145504.0 49 129288.5 50 113073.0 51 91364.5 52 69656.0 53 55729.5 54 41803.0 55 34334.0 56 26865.0 57 22291.0 58 17717.0 59 16051.5 60 14386.0 61 12900.0 62 11414.0 63 9192.5 64 6971.0 65 5846.0 66 4721.0 67 3628.5 68 2536.0 69 2538.5 70 2541.0 71 2056.0 72 1571.0 73 1390.5 74 1210.0 75 970.0 76 730.0 77 545.0 78 360.0 79 236.0 80 112.0 81 84.0 82 56.0 83 69.5 84 83.0 85 79.0 86 75.0 87 41.0 88 7.0 89 4.5 90 2.0 91 2.5 92 3.0 93 2.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1784950.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.936760493213864 #Duplication Level Percentage of deduplicated Percentage of total 1 78.75582971308872 18.064036035734517 2 8.758946544381681 4.018037181226917 3 3.599295857634563 2.4766856109234228 4 1.9814190708917205 1.8178933866291898 5 1.2074493520711758 1.3847488298071413 6 0.8243731264213039 1.134506937466042 7 0.5827043121847985 0.935574447286195 8 0.43144563973991373 0.791677224364467 9 0.35411936165953883 0.7310115885955161 >10 2.3080553479502357 10.757057525633389 >50 0.5584853474736386 9.340113642137435 >100 0.530703271297477 24.226884358093336 >500 0.07325130837424852 11.8936980245714 >1k 0.03367593707138271 11.026448622979778 >5k 0.0 0.0 >10k+ 2.458097596451293E-4 1.4016265845512745 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 24860 1.3927560996106334 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 4172 0.2337320373119695 No Hit ATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCC 3579 0.20050981820219052 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 2928 0.16403820835317515 No Hit GAAGATGGGAAGCTATACTATATAGGTGGCTATCTATCCCTACCAAGGCT 2540 0.14230090478724894 No Hit TATAGGGTTTATCTATCTTGTTGATTTTCTCAAAGAACCAACTCCTCGTT 2346 0.13143225300428582 No Hit GCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCTTCTG 2283 0.12790274237373594 TruSeq Adapter, Index 13 (95% over 21bp) TAATTAGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGG 2282 0.12784671839547326 No Hit TTAGCAGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 2145 0.12017143337348386 No Hit CTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCTTCTGC 2114 0.11843469004734027 No Hit TTGTTAGGGATCAATATTTTCACAACCTCAATCTTATTAATCTTCATTCT 2072 0.116081682960307 No Hit TTTTTTTTGGGAGGTATCCCAATAGGAGGTTTCCTCCTATGGTTTTCAAA 2029 0.11367265189501105 No Hit ATTTGTGGGATGCCACAACTAGATACATCAACATGATTTATCACAATTAT 1932 0.1082383260035295 No Hit TTAGTATGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAA 1912 0.10711784643827559 No Hit ATTAAAGGGGGGAATTCTCTTGCTTCAACAATAACGTCTCTTTCAGAAGG 1903 0.10661363063391133 No Hit TGTATAGGGGTTTATCTTAGGGGCTATTAATATCTTATCATTTGGTTTTA 1879 0.1052690551556066 No Hit TCTATAGGGATTATTTTGGAATTTTACAATATAGGTGATATTATGGCATT 1870 0.10476483935124234 No Hit AGTAAAGGGATGCCACAACTAGATACATCAACATGATTTATCACAATTAT 1846 0.10342026387293761 No Hit GGCTAAGGGGCTATTAATGATATTAAAATCCCAACTATACCAAAGAATAT 1844 0.10330821591641223 No Hit AGTTAAGGGAGGTTTCCTCCTATGGTTTTCAAAACAATCACCATCATGCT 1801 0.10089918485111626 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGC 1789 0.10022689711196393 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.14028404156979188 0.0 2 0.0 0.0 0.0 0.5410795820611222 0.0 3 0.0 0.0 0.0 0.773635115829575 0.0 4 0.0 0.0 0.0 1.2849659654332055 0.0 5 0.0 0.0 0.0 2.1595562900921594 0.0 6 0.0 0.0 0.0 3.072747135774111 0.0 7 0.0 0.0 0.0 3.6208297151180706 0.0 8 0.0 0.0 0.0 5.05297067144738 0.0 9 0.0 0.0 0.0 5.579091851312362 0.0 10 0.0 0.0 0.0 6.4959242555813885 0.0 11 0.0 0.0 0.0 7.325583349673661 0.0 12 0.0 0.0 0.0 8.077481161937309 0.0 13 0.0 0.0 0.0 8.351270343707107 0.0 14 0.0 0.0 0.0 8.441693044623099 0.0 15 0.0 0.0 0.0 8.582929493823356 0.0 16 0.0 0.0 0.0 8.9449564413569 0.0 17 0.0 0.0 0.0 9.358693520826915 0.0 18 0.0 0.0 0.0 10.088741981568111 0.0 19 0.0 0.0 0.0 10.347572761141768 0.0 20 0.0 0.0 0.0 10.604050533628392 0.0 21 0.0 0.0 0.0 10.997002717162946 0.0 22 0.0 0.0 0.0 11.320765287543068 0.0 23 0.0 0.0 0.0 11.778985405753662 0.0 24 0.0 0.0 0.0 12.094792571220482 0.0 25 0.0 0.0 0.0 12.334407126250035 0.0 26 5.602397826269643E-5 0.0 0.0 12.62349085408555 0.0 27 1.1204795652539286E-4 0.0 0.0 12.859407826549763 0.0 28 1.1204795652539286E-4 0.0 0.0 13.106025378862153 0.0 29 1.1204795652539286E-4 0.0 0.0 13.384632622762542 0.0 30 1.1204795652539286E-4 0.0 0.0 13.82565337964649 0.0 31 1.1204795652539286E-4 0.0 0.0 14.251323566486457 0.0 32 1.1204795652539286E-4 0.0 0.0 14.563769293257515 0.0 33 1.1204795652539286E-4 0.0 0.0 14.86058433009328 0.0 34 1.1204795652539286E-4 0.0 0.0 15.159080086276926 0.0 35 1.1204795652539286E-4 0.0 0.0 15.61001708731337 0.0 36 1.1204795652539286E-4 0.0 0.0 15.940502535085017 0.0 37 1.680719347880893E-4 0.0 0.0 16.272724726182805 0.0 38 1.680719347880893E-4 0.0 0.0 16.57693492814925 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGTAACG 190 0.0 44.000004 1 TAGTACG 175 0.0 44.000004 1 TGATCAC 25 4.4438326E-5 44.0 33 TCACGAG 25 4.4438326E-5 44.0 1 TGTTTCG 25 4.4438326E-5 44.0 1 AACCGGC 20 7.857653E-4 44.0 34 AACCGCA 35 1.4466787E-7 44.0 10 ATCTCGA 50 2.7284841E-11 44.0 39 TCGTTAG 75 0.0 44.0 1 AGTCCGA 25 4.4438326E-5 44.0 34 GGTACGA 30 2.528508E-6 44.0 8 GTCGCAT 20 7.857653E-4 44.0 29 CGAACTC 55 1.8189894E-12 44.0 13 ACGCCCA 25 4.4438326E-5 44.0 16 GCGACAA 20 7.857653E-4 44.0 8 GGTAATC 60 0.0 44.0 8 CTCCGAT 30 2.528508E-6 44.0 21 CCTAGTT 40 8.3164196E-9 44.0 34 CACGGAT 20 7.857653E-4 44.0 23 CGACGGT 105 0.0 44.0 28 >>END_MODULE