##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546197_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1683877 Sequences flagged as poor quality 0 Sequence length 50 %GC 37 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.93104128151878 31.0 31.0 34.0 30.0 34.0 2 32.28937624303913 33.0 31.0 34.0 30.0 34.0 3 32.16912636730593 33.0 31.0 34.0 30.0 34.0 4 35.92369216991502 37.0 35.0 37.0 35.0 37.0 5 35.9317277924694 37.0 35.0 37.0 35.0 37.0 6 36.0048127030656 37.0 35.0 37.0 35.0 37.0 7 36.21226609782068 37.0 35.0 37.0 35.0 37.0 8 36.10719488418691 37.0 36.0 37.0 35.0 37.0 9 37.87528423988213 39.0 38.0 39.0 35.0 39.0 10 37.60410291250489 39.0 37.0 39.0 35.0 39.0 11 37.394459334024994 39.0 37.0 39.0 35.0 39.0 12 36.867971948069844 39.0 35.0 39.0 33.0 39.0 13 36.71568647828791 39.0 35.0 39.0 33.0 39.0 14 37.895256601283826 40.0 35.0 41.0 33.0 41.0 15 38.05857019247843 40.0 35.0 41.0 33.0 41.0 16 38.15203188831488 40.0 35.0 41.0 34.0 41.0 17 38.060515108882655 40.0 35.0 41.0 34.0 41.0 18 37.8507824502621 39.0 36.0 41.0 34.0 41.0 19 37.57097282046135 38.0 36.0 41.0 34.0 41.0 20 37.23465906357768 38.0 35.0 41.0 34.0 41.0 21 37.15572871415193 38.0 35.0 41.0 33.0 41.0 22 37.08501095982664 38.0 35.0 41.0 33.0 41.0 23 37.023668593371134 38.0 35.0 41.0 33.0 41.0 24 36.962807259675145 38.0 35.0 41.0 33.0 41.0 25 36.93325700155059 38.0 35.0 41.0 33.0 41.0 26 36.861082489991844 38.0 35.0 41.0 33.0 41.0 27 36.788699530903976 38.0 35.0 41.0 33.0 41.0 28 36.72318286905754 38.0 35.0 41.0 33.0 41.0 29 36.640635865921325 38.0 35.0 41.0 33.0 41.0 30 36.4124107639691 38.0 35.0 41.0 32.0 41.0 31 36.06712010437817 38.0 35.0 41.0 31.0 41.0 32 35.64014414354492 38.0 35.0 41.0 29.0 41.0 33 35.152385833407074 38.0 35.0 41.0 24.0 41.0 34 34.6110624469602 38.0 35.0 41.0 21.0 41.0 35 34.312445623997476 38.0 34.0 41.0 18.0 41.0 36 34.120264722423315 38.0 34.0 41.0 18.0 41.0 37 34.06721809253289 38.0 34.0 41.0 17.0 41.0 38 34.00157612462193 38.0 34.0 40.0 17.0 41.0 39 33.934748203105094 37.0 34.0 40.0 16.0 41.0 40 33.8051205640317 37.0 34.0 40.0 15.0 41.0 41 33.66685690225592 37.0 34.0 40.0 15.0 41.0 42 33.57478248114322 37.0 34.0 40.0 14.0 41.0 43 33.42483566198719 37.0 33.0 40.0 12.0 41.0 44 33.271522207382134 37.0 33.0 40.0 10.0 41.0 45 33.2291378764601 37.0 33.0 40.0 10.0 41.0 46 33.14238569681752 36.0 33.0 40.0 10.0 41.0 47 33.13071382292175 36.0 33.0 40.0 10.0 41.0 48 33.069653543578305 36.0 33.0 40.0 10.0 41.0 49 32.99027007317043 36.0 33.0 40.0 10.0 41.0 50 32.8656154814158 36.0 33.0 40.0 10.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 4.0 9 1.0 10 3.0 11 3.0 12 3.0 13 5.0 14 5.0 15 35.0 16 78.0 17 231.0 18 553.0 19 1185.0 20 2317.0 21 3940.0 22 6336.0 23 10482.0 24 16530.0 25 28221.0 26 45355.0 27 53543.0 28 47608.0 29 39693.0 30 37650.0 31 39146.0 32 46376.0 33 59370.0 34 107651.0 35 230915.0 36 97684.0 37 115313.0 38 196417.0 39 497224.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.0466174192058 23.88220754841357 28.396967236918137 21.674207795462493 2 34.80753047877012 25.557329899986758 29.453041997723112 10.182097623520008 3 23.55154206631482 23.455632448213258 42.53725183015149 10.45557365532043 4 21.73953323194034 26.398008880696157 41.2676222788244 10.594835608539103 5 19.44708550565154 28.659219170996458 41.0877397814686 10.805955541883403 6 17.572898733102242 37.628401599404235 35.81146366391369 8.987236003579833 7 76.00341355098978 4.50080379980248 18.051259088401352 1.4445235608064009 8 76.56164909907315 4.173879683611095 17.228396135822273 2.036075081493482 9 72.41817543680446 6.088152519453618 18.84739799878495 2.6462740449569653 10 38.54960902726268 29.914595899819286 23.42017855223392 8.115616520684112 11 33.4040431694239 20.59895111103721 35.30038120361523 10.69662451592367 12 31.727851856162893 20.838339142348282 35.877026647433276 11.556782354055551 13 15.933764758352304 36.58390725688396 34.8152507576266 12.667077227137135 14 11.636182452756346 35.10951215557906 38.177254039338976 15.077051352325615 15 9.729095414926388 24.584159056748206 52.862649706599704 12.824095821725695 16 12.664226662636285 22.64625029025279 47.479180486460706 17.21034256065021 17 12.455779133511532 23.3096597910655 38.90052539466956 25.334035680753402 18 15.698415026750768 25.778129875281863 42.89173140318444 15.63172369478293 19 20.205276276117555 26.739660913475273 35.86722783196159 17.187834978445576 20 21.03336526361486 24.106986436657785 39.96669590474839 14.892952394978968 21 16.72259909720247 28.79996579322599 39.02618777974876 15.451247329822785 22 18.110942782637924 25.248637519248735 35.12020177245726 21.52021792565609 23 13.799463975100318 29.310751319722282 36.473150948673805 20.416633756503593 24 13.562926508290094 25.15736006846106 48.476818674998235 12.802894748250615 25 12.30844058087378 29.097255915960606 42.639337671338225 15.954965831827383 26 12.52775588715803 32.7411681494551 38.02356110333475 16.70751486005213 27 13.052972396439882 34.39936527430448 36.82157307214244 15.726089257113198 28 11.095169065198943 30.72552211355105 43.21924938698017 14.960059434269843 29 12.132002515623173 24.883884036660636 41.77264728955856 21.211466158157634 30 14.773881940307993 32.491684368870175 37.25770944077269 15.476724250049143 31 18.783141523994924 30.97559976174032 35.180182400495994 15.061076313768762 32 19.592642455476263 28.478624032515437 35.08914249675006 16.83959101525824 33 20.178195913359467 31.24177122200731 31.52463036195637 17.05540250267686 34 14.873057830233444 28.276115179434125 35.24224156514995 21.60858542518248 35 17.433696166644 28.27213626648502 34.920424710355924 19.373742856515054 36 22.15244937724074 30.062528320061382 31.026316055151298 16.758706247546584 37 15.885364548598266 32.58616870472131 36.060591123936014 15.467875622744417 38 15.820395432683029 31.557590013997462 34.972922606579935 17.649091946739578 39 16.208012818038373 33.303798317810624 32.78826185047958 17.699927013671427 40 19.01029588265651 28.898072721463624 32.14450936737065 19.94712202850921 41 14.764498832159356 29.62544176326418 34.061038900109686 21.549020504466775 42 16.95765189500183 28.944275621081587 31.544584313462327 22.553488170454255 43 17.1298735002616 29.69741851691068 31.88795856229404 21.284749420533686 44 14.236609918657955 31.325922261542853 33.38011030496883 21.057357514830358 45 15.405935231611334 36.433480592703624 29.312117215212275 18.848466960472766 46 18.04508286531617 33.40968491166516 31.57136774241824 16.973864480600422 47 16.90586663990303 31.229418775836955 32.5323049130073 19.33240967125271 48 17.271748470939386 27.551715475655286 35.547073806459736 19.62946224694559 49 18.328357712588268 28.896884986254932 33.55726101134465 19.217496289812143 50 16.610061186179276 32.21684244157976 32.12200178516602 19.051094587074946 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 6596.0 1 7921.0 2 9246.0 3 27079.0 4 44912.0 5 33252.0 6 21592.0 7 23582.5 8 25573.0 9 27936.0 10 30299.0 11 30839.5 12 31380.0 13 31124.5 14 30869.0 15 27241.0 16 23613.0 17 21892.5 18 20172.0 19 19082.0 20 17992.0 21 19463.0 22 20934.0 23 21447.0 24 21960.0 25 24155.5 26 26351.0 27 33856.5 28 41362.0 29 42998.0 30 44634.0 31 58601.0 32 72568.0 33 80831.5 34 89095.0 35 93734.5 36 98374.0 37 101882.0 38 105390.0 39 106768.0 40 108146.0 41 124834.0 42 141522.0 43 138118.0 44 134714.0 45 123791.5 46 112869.0 47 104555.5 48 96242.0 49 89564.5 50 82887.0 51 76425.5 52 69964.0 53 57237.5 54 44511.0 55 36870.5 56 29230.0 57 24432.5 58 19635.0 59 18364.0 60 17093.0 61 15601.5 62 14110.0 63 11873.5 64 9637.0 65 8528.5 66 7420.0 67 6227.5 68 5035.0 69 4076.5 70 3118.0 71 2578.0 72 2038.0 73 1672.5 74 1307.0 75 1004.0 76 701.0 77 545.0 78 389.0 79 293.0 80 197.0 81 151.0 82 105.0 83 75.0 84 45.0 85 32.0 86 19.0 87 20.0 88 21.0 89 11.5 90 2.0 91 2.0 92 2.0 93 2.0 94 2.0 95 2.5 96 3.0 97 2.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1683877.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.597133908379703 #Duplication Level Percentage of deduplicated Percentage of total 1 79.75171308514992 18.0216014000781 2 8.39220440642889 3.7927953351713564 3 3.0093248133492674 2.0400634734318945 4 1.5035763757525011 1.35906066817422 5 0.9709003480923711 1.0969782588767887 6 0.6522331201087906 0.8843159492747188 7 0.48348906875173386 0.764782706087451 8 0.38990753431054714 0.704863421176127 9 0.30800009264137423 0.6263927403489438 >10 3.1613476642896527 15.974022039272526 >50 0.7703397896167532 12.168133352141174 >100 0.5141743900020073 23.644126632591153 >500 0.07349124956906436 11.549811445360875 >1k 0.018769347911523633 5.3699478662788875 >5k 2.6435701283836097E-4 0.30728768451535265 >10k+ 2.6435701283836097E-4 1.695817027220418 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 28388 1.6858713552118119 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 5144 0.3054854956745653 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGC 2432 0.14442860137646635 No Hit GAGAGAGGACGAGAGAAAGAGAGAAAGAGAAAGAGAGAAAGAGAGAAAGA 2000 0.11877352086880455 No Hit TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1694 0.10060117217587745 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.06752274661391539 0.0 2 0.0 0.0 0.0 0.281374470938198 0.0 3 0.0 0.0 0.0 0.41267859825866143 0.0 4 0.0 0.0 0.0 0.6442869639528302 0.0 5 0.0 0.0 0.0 1.1279327409306024 0.0 6 0.0 0.0 0.0 1.5390672834179693 0.0 7 0.0 0.0 0.0 1.79781539863066 0.0 8 0.0 0.0 0.0 2.428027700360537 0.0 9 0.0 0.0 0.0 2.6618333761907786 0.0 10 0.0 0.0 0.0 3.127960058840402 0.0 11 0.0 0.0 0.0 3.7068621995549558 0.0 12 0.0 0.0 0.0 4.130943055817022 0.0 13 0.0 0.0 0.0 4.28861490477036 0.0 14 0.0 0.0 0.0 4.3461012888708614 0.0 15 0.0 0.0 0.0 4.435597136845506 0.0 16 0.0 0.0 0.0 4.649627021451091 0.0 17 0.0 0.0 0.0 4.902911554703818 0.0 18 0.0 0.0 0.0 5.227519587238261 0.0 19 0.0 0.0 0.0 5.405264161218426 0.0 20 0.0 0.0 0.0 5.6285583804517785 0.0 21 0.0 0.0 0.0 5.88273371511102 0.0 22 0.0 0.0 0.0 6.147598666648455 0.0 23 0.0 0.0 0.0 6.456944301751256 0.0 24 0.0 0.0 0.0 6.672933949451178 0.0 25 0.0 0.0 0.0 6.874730161407276 0.0 26 0.0 0.0 0.0 7.086384575595486 0.0 27 0.0 0.0 0.0 7.290734418250264 0.0 28 0.0 0.0 0.0 7.538377209261721 0.0 29 0.0 0.0 0.0 7.766719303131999 0.0 30 0.0 0.0 0.0 8.05029108420627 0.0 31 0.0 0.0 0.0 8.33142800810273 0.0 32 0.0 0.0 0.0 8.581505656291997 0.0 33 0.0 0.0 0.0 8.832355332366912 0.0 34 0.0 0.0 0.0 9.085342931817467 0.0 35 0.0 0.0 0.0 9.412860915613194 0.0 36 0.0 0.0 0.0 9.673687567441089 0.0 37 0.0 0.0 0.0 9.941224923198073 0.0 38 0.0 0.0 0.0 10.19130257138734 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTAGACG 40 8.3164196E-9 44.000004 1 AGCGTCG 20 7.8575255E-4 44.000004 17 GGTACGT 20 7.8575255E-4 44.000004 34 ACGCCTA 20 7.8575255E-4 44.000004 30 CTATACG 20 7.8575255E-4 44.000004 1 CCGGATG 80 0.0 44.000004 1 TCGGCCA 20 7.8575255E-4 44.000004 44 TAACCCG 20 7.8575255E-4 44.000004 37 TGCGCAA 20 7.8575255E-4 44.000004 1 GTTCGGC 40 8.3164196E-9 44.000004 32 CTCGGAA 20 7.8575255E-4 44.000004 30 CCGAATC 20 7.8575255E-4 44.000004 18 CGGTCTA 80 0.0 44.000004 31 ACCGTCA 20 7.8575255E-4 44.000004 15 CCAACGT 20 7.8575255E-4 44.000004 18 ATACGTC 20 7.8575255E-4 44.000004 9 CACGTCG 40 8.3164196E-9 44.000004 1 AGGATCG 20 7.8575255E-4 44.000004 12 GTAAGCG 80 0.0 44.000004 1 ATACGAG 20 7.8575255E-4 44.000004 1 >>END_MODULE