##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546196_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1726938 Sequences flagged as poor quality 0 Sequence length 50 %GC 37 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.869534980410414 31.0 31.0 34.0 30.0 34.0 2 32.26657355388555 33.0 31.0 34.0 30.0 34.0 3 32.274622482104164 34.0 31.0 34.0 30.0 34.0 4 35.9664857684526 37.0 35.0 37.0 35.0 37.0 5 35.90171795397403 37.0 35.0 37.0 35.0 37.0 6 35.99024632036587 37.0 35.0 37.0 35.0 37.0 7 36.18922219558548 37.0 35.0 37.0 35.0 37.0 8 36.08710156357669 37.0 35.0 37.0 35.0 37.0 9 37.85184586823615 39.0 38.0 39.0 35.0 39.0 10 37.6088828898316 39.0 37.0 39.0 35.0 39.0 11 37.401245441353424 39.0 37.0 39.0 35.0 39.0 12 36.863278820664085 39.0 35.0 39.0 33.0 39.0 13 36.672225638673766 39.0 35.0 39.0 33.0 39.0 14 37.83973425797568 40.0 35.0 41.0 33.0 41.0 15 38.0366046725476 40.0 35.0 41.0 33.0 41.0 16 38.12033205592789 40.0 35.0 41.0 34.0 41.0 17 38.04142650170417 40.0 35.0 41.0 34.0 41.0 18 37.836072864225585 39.0 36.0 41.0 34.0 41.0 19 37.56428835314296 38.0 36.0 41.0 34.0 41.0 20 37.22399298643032 38.0 35.0 41.0 34.0 41.0 21 37.145579632853064 38.0 35.0 41.0 33.0 41.0 22 37.08257621292716 38.0 35.0 41.0 33.0 41.0 23 37.01037211526992 38.0 35.0 41.0 33.0 41.0 24 36.94988470923681 38.0 35.0 41.0 33.0 41.0 25 36.914754322390266 38.0 35.0 41.0 33.0 41.0 26 36.862864793061476 38.0 35.0 41.0 33.0 41.0 27 36.78012875968911 38.0 35.0 41.0 33.0 41.0 28 36.71221086107318 38.0 35.0 41.0 33.0 41.0 29 36.63227400173023 38.0 35.0 41.0 33.0 41.0 30 36.404551871578484 38.0 35.0 41.0 32.0 41.0 31 36.059568438473185 38.0 35.0 41.0 31.0 41.0 32 35.63957536402581 38.0 35.0 41.0 29.0 41.0 33 35.136063946707985 38.0 35.0 41.0 24.0 41.0 34 34.684049456320956 38.0 35.0 41.0 21.0 41.0 35 34.35528664028471 38.0 34.0 41.0 18.0 41.0 36 34.14642737608414 38.0 34.0 41.0 18.0 41.0 37 34.02817877653975 38.0 34.0 40.0 17.0 41.0 38 33.966946699881525 38.0 34.0 40.0 17.0 41.0 39 33.91040963833097 37.0 34.0 40.0 16.0 41.0 40 33.796421759206176 37.0 34.0 40.0 15.0 41.0 41 33.67830518524695 37.0 34.0 40.0 15.0 41.0 42 33.5732018173206 37.0 34.0 40.0 14.0 41.0 43 33.449185784318836 37.0 33.0 40.0 12.0 41.0 44 33.29025766993372 37.0 33.0 40.0 10.0 41.0 45 33.24898635619808 37.0 33.0 40.0 10.0 41.0 46 33.17200154261473 36.0 33.0 40.0 10.0 41.0 47 33.14020422273411 36.0 33.0 40.0 10.0 41.0 48 33.09213532854103 36.0 33.0 40.0 10.0 41.0 49 33.00702572993356 36.0 33.0 40.0 10.0 41.0 50 32.855947926329726 36.0 33.0 40.0 10.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 3.0 10 2.0 11 1.0 12 6.0 13 6.0 14 18.0 15 18.0 16 81.0 17 233.0 18 625.0 19 1247.0 20 2294.0 21 3982.0 22 6629.0 23 10636.0 24 17009.0 25 28367.0 26 45290.0 27 54085.0 28 49561.0 29 41764.0 30 39184.0 31 40594.0 32 48176.0 33 62104.0 34 112801.0 35 232445.0 36 100803.0 37 118939.0 38 203696.0 39 506339.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.192023106793645 23.939191794957317 28.469927698620335 21.398857399628707 2 34.82487500998877 25.587079559312492 29.423233491879845 10.16481193881888 3 23.51132466828572 23.455040076713814 42.51808692610852 10.515548328891947 4 21.7878117222506 26.400831992810396 41.28156309027886 10.529793194660146 5 19.463871893490094 28.66402847120163 41.064763182001904 10.807336453306373 6 17.546431892748902 37.58646807239172 35.77638571853767 9.090714316321721 7 75.97418089126535 4.533747013500196 18.013732977095877 1.4783391181385783 8 76.51444348320553 4.218217446138773 17.186488455289073 2.0808506153666197 9 72.35662195168558 6.139073898426 18.816425372537985 2.6878787773504316 10 38.51545336312016 29.989495859144917 23.401824500937497 8.09322627679743 11 33.28579254148094 20.680418173669235 35.35025577061828 10.683533514231547 12 31.7008485539145 20.87052343512043 35.78431883483947 11.644309176125605 13 16.0552376518439 36.455159362988134 34.784514556978884 12.705088428189084 14 11.705399962245314 35.1190372786979 38.117928958653984 15.057633800402796 15 9.837990709568032 24.634873979262718 52.66876981107602 12.858365500093228 16 12.72112837866791 22.70069915654181 47.41038763406677 17.167784830723512 17 12.578563909069116 23.353415119708988 38.810831656955834 25.25718931426606 18 15.723783945920466 25.823683305364753 42.782369720279476 15.670163028435299 19 20.209005766275336 26.706285923408945 35.8542692325955 17.23043907772022 20 21.02849088965556 24.17017866304407 39.88533462116185 14.915995826138516 21 16.682590805228674 28.82998694799698 39.079978551633005 15.407443695141342 22 18.154444456025637 25.204552798073816 35.114462707983726 21.52654003791682 23 13.843114228767911 29.34795574595035 36.406228828133955 20.402701197147785 24 13.586011773439463 25.21045920583136 48.28135115447109 12.922177866258084 25 12.323256538451293 29.073481503099707 42.61838004606998 15.98488191237902 26 12.533049825760973 32.693704116766206 37.983818758982665 16.78942729849016 27 13.033299400441706 34.36747584452945 36.866060043846396 15.733164711182452 28 11.134563024266072 30.656514594038697 43.21249517932896 14.99642720236627 29 12.099739538999083 24.971133879733955 41.70439239856903 21.224734182697933 30 14.863417215904681 32.42751042596781 37.260689150392196 15.448383207735308 31 18.764367915929814 31.009335598614424 35.1673308480096 15.058965637446162 32 19.59057013048529 28.46309479552827 35.03953239780467 16.906802676181773 33 20.16169659825657 31.22497738772324 31.467950789200305 17.145375224819883 34 14.91402702355267 28.31033887724979 35.04636530089673 21.729268798300808 35 17.421702458339556 28.198001317939614 34.87450041634384 19.505795807376987 36 22.234440379446163 30.009241790961806 30.85715873992002 16.899159089672008 37 15.957666111927585 32.50852086177963 36.00494053637131 15.528872489921469 38 15.780415973242814 31.50228902253584 34.973114263511484 17.744180740709858 39 16.15912094122661 33.32238910719435 32.74784618787704 17.770643763701997 40 19.03160391397954 28.856623688864335 32.189053689246514 19.922718707909606 41 14.818366380263798 29.606563756197385 33.952869182333124 21.622200681205694 42 17.03315347742652 28.919741183528302 31.537669563122705 22.50943577592247 43 17.165584404304035 29.66632270527373 31.884584159940886 21.283508730481348 44 14.317306122165357 31.327297216228956 33.226091498363 21.129305163242687 45 15.532173129550683 36.3273609127832 29.174701118395678 18.96576483927043 46 18.0179022061012 33.44051726234526 31.455095666433884 17.08648486511965 47 16.983354353196233 31.221039782551546 32.4178980368722 19.37770782738002 48 17.282786064120426 27.521949253534288 35.50469096169058 19.690573720654708 49 18.39278538083012 28.840525832427105 33.422045261613334 19.34464352512945 50 16.670256836087923 32.155352421453465 32.08493877603018 19.08945196642844 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 6871.0 1 8171.0 2 9471.0 3 27849.0 4 46227.0 5 34009.5 6 21792.0 7 23997.5 8 26203.0 9 28430.5 10 30658.0 11 31295.5 12 31933.0 13 31599.5 14 31266.0 15 27581.0 16 23896.0 17 22224.5 18 20553.0 19 19417.0 20 18281.0 21 19944.0 22 21607.0 23 21912.5 24 22218.0 25 24770.5 26 27323.0 27 34778.0 28 42233.0 29 43745.0 30 45257.0 31 60004.0 32 74751.0 33 82560.0 34 90369.0 35 95257.5 36 100146.0 37 103802.0 38 107458.0 39 109202.0 40 110946.0 41 127972.5 42 144999.0 43 142100.5 44 139202.0 45 127156.5 46 115111.0 47 107596.0 48 100081.0 49 93014.5 50 85948.0 51 79803.0 52 73658.0 53 59905.0 54 46152.0 55 37984.5 56 29817.0 57 25006.0 58 20195.0 59 18987.0 60 17779.0 61 16058.0 62 14337.0 63 12029.0 64 9721.0 65 8546.0 66 7371.0 67 6244.0 68 5117.0 69 4071.5 70 3026.0 71 2594.5 72 2163.0 73 1740.5 74 1318.0 75 1018.5 76 719.0 77 546.5 78 374.0 79 278.0 80 182.0 81 144.5 82 107.0 83 80.5 84 54.0 85 36.5 86 19.0 87 18.5 88 18.0 89 11.0 90 4.0 91 3.0 92 2.0 93 1.0 94 0.0 95 0.5 96 1.0 97 2.5 98 4.0 99 2.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1726938.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.49023477771 #Duplication Level Percentage of deduplicated Percentage of total 1 79.44502119005237 17.867371784844238 2 8.462261737873881 3.8063650647043166 3 3.095399464294185 2.0884878204832193 4 1.59618720115665 1.435944996127555 5 0.977177744291225 1.0988478444331355 6 0.6621132059295867 0.8934648870467191 7 0.503348153148942 0.7924292697472503 8 0.386491713963224 0.6953831509337957 9 0.30992229026087903 0.6273202563731479 >10 3.1957511094100512 16.05584551020605 >50 0.7579490198073096 11.95226251363427 >100 0.5168743402747682 23.829199232131867 >500 0.07180250363097043 11.327946636387946 >1k 0.01918189627686575 5.528576165881386 >5k 2.5921481455223986E-4 0.31253568721109853 >10k+ 2.5921481455223986E-4 1.6880191798540123 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 28955 1.6766670256836087 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 5361 0.3104338430215792 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGC 2625 0.152003140819184 No Hit GAGAGAGGACGAGAGAAAGAGAGAAAGAGAAAGAGAGAAAGAGAGAAAGA 2008 0.11627516448187486 No Hit TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1777 0.10289888808978666 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.06948715008876984 0.0 2 0.0 0.0 0.0 0.2945097044595695 0.0 3 0.0 0.0 0.0 0.4367267383079184 0.0 4 0.0 0.0 0.0 0.666613393184932 0.0 5 0.0 0.0 0.0 1.1619409614010463 0.0 6 0.0 0.0 0.0 1.590445053615127 0.0 7 0.0 0.0 0.0 1.855943872912635 0.0 8 0.0 0.0 0.0 2.501132061486863 0.0 9 0.0 0.0 0.0 2.742947343795782 0.0 10 0.0 0.0 0.0 3.2203819708640378 0.0 11 0.0 0.0 0.0 3.83945457219657 0.0 12 0.0 0.0 0.0 4.288457373686837 0.0 13 0.0 0.0 0.0 4.450014997643227 0.0 14 0.0 0.0 0.0 4.508268391800979 0.0 15 0.0 0.0 0.0 4.604392282757111 0.0 16 0.0 0.0 0.0 4.8209026612420365 0.0 17 0.0 0.0 0.0 5.079510671489075 0.0 18 0.0 0.0 0.0 5.420750484383342 0.0 19 0.0 0.0 0.0 5.609176473040723 0.0 20 0.0 0.0 0.0 5.848791328930164 0.0 21 0.0 0.0 0.0 6.116201044855114 0.0 22 0.0 0.0 0.0 6.40474643559873 0.0 23 0.0 0.0 0.0 6.7339997151026845 0.0 24 0.0 0.0 0.0 6.966550044066435 0.0 25 0.0 0.0 0.0 7.179122817379663 0.0 26 0.0 0.0 0.0 7.394417170738034 0.0 27 0.0 0.0 0.0 7.611332890931811 0.0 28 0.0 0.0 0.0 7.87295201101603 0.0 29 0.0 0.0 0.0 8.107818578316072 0.0 30 0.0 0.0 0.0 8.401633411274753 0.0 31 5.7905958407308196E-5 0.0 0.0 8.690468331810406 0.0 32 5.7905958407308196E-5 0.0 0.0 8.941722285339717 0.0 33 5.7905958407308196E-5 0.0 0.0 9.19784033937524 0.0 34 5.7905958407308196E-5 0.0 0.0 9.466234456593115 0.0 35 5.7905958407308196E-5 0.0 0.0 9.812801617660854 0.0 36 5.7905958407308196E-5 0.0 0.0 10.082180136171651 0.0 37 5.7905958407308196E-5 0.0 0.0 10.356017413479812 0.0 38 5.7905958407308196E-5 0.0 0.0 10.614972859477295 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTTCGCC 30 2.5284571E-6 44.000004 32 GCCGTAT 30 2.5284571E-6 44.000004 36 CGGAATA 55 1.8189894E-12 44.0 34 AATCCGG 80 0.0 44.0 2 CGAACGC 20 7.857583E-4 44.0 42 CGAACAC 20 7.857583E-4 44.0 20 CGAGTGT 25 4.443773E-5 44.0 21 CATGCGG 55 1.8189894E-12 44.0 2 GCGCGTA 50 2.7284841E-11 44.0 7 CGTGACA 20 7.857583E-4 44.0 22 ACCGAGA 20 7.857583E-4 44.0 18 CAATTCG 20 7.857583E-4 44.0 21 CACGACC 20 7.857583E-4 44.0 27 TAACGAA 40 8.3164196E-9 44.0 11 CGTTCAC 25 4.443773E-5 44.0 21 TAGTTCG 20 7.857583E-4 44.0 1 CTAACCG 50 2.7284841E-11 44.0 40 TCTACGA 20 7.857583E-4 44.0 32 GTATGCG 40 8.3164196E-9 44.0 1 CTACGCG 40 8.3164196E-9 44.0 1 >>END_MODULE