FastQCFastQC Report
Thu 26 May 2016
SRR1546194_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1546194_1.fastq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences4041879
Sequences flagged as poor quality0
Sequence length50
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT592261.4653085854376147No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA421741.0434255948780258No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA290440.7185766817858724No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA161870.40048205302533796No Hit
AGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG126540.3130722122062536No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA98780.2443912843506696No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA97150.2403585065262963No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA95630.23659787935264762No Hit
GGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA95520.23632572870192306No Hit
GAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA94270.23323310767096195No Hit
TAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA89610.22170381646753898No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCC67370.16667990308467917No Hit
CCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTG57510.14228530839245807No Hit
GAAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA52740.1304838665383105No Hit
GAATCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTT50300.12444707028587447No Hit
TATGCAGTTTTCACCATTCTATATTGTAAAGAATATATATCCAGTATGTA49820.12325950380998539No Hit
GAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA48610.12026584665201508No Hit
AGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG44770.11076531484490257No Hit
GAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA44560.11024575451170113No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGC44460.10999834482922421No Hit
CTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGC41910.1036893979260636TruSeq Adapter, Index 13 (95% over 21bp)
AGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG41340.10227916273594534No Hit
GAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA40440.10005247559365335No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGATA1500.044.0000049
GGTACGA408.3218765E-944.012
ACACGAA302.5293048E-644.027
CAACCGT408.3218765E-944.031
CTAACCG207.858838E-444.01
TACGCGT408.3218765E-944.022
TGCGCAA302.5293048E-644.01
CCATACG254.4448363E-544.042
CGTACTC302.5293048E-644.07
AATTACG1200.044.01
TCGAGTA207.858838E-444.030
ATACGTA351.4472971E-744.026
AATACGT351.4472971E-744.025
TACCGGA408.3218765E-944.03
CCTTACG1300.043.99999637
CGCATAC454.802132E-1043.99999644
CTACGCG454.802132E-1043.9999961
TTGCGTA454.802132E-1043.99999611
TACGTTG2400.043.0833321
GCGATAA3400.042.705889