SRR1546193_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546193_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3019110
Sequences flagged as poor quality	0
Sequence length	50
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	48037	1.5910980388260116	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	21084	0.6983515009390184	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	10224	0.3386428450768604	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	9453	0.3131055178512873	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	8517	0.28210300386537757	No Hit
GAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	7136	0.23636104679855985	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA	5119	0.16955327894644448	No Hit
TAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	4682	0.15507881461755285	No Hit
AGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	4451	0.14742755315308154	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3819	0.12649423174379204	No Hit
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3544	0.11738558714323094	No Hit
GAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	3249	0.10761449566262905	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAATTA	20	7.8585185E-4	44.000004	32
GTCCGAT	20	7.8585185E-4	44.000004	16
TAAGCGT	40	8.3200575E-9	44.000004	38
CAATACG	30	2.5290901E-6	44.000004	1
CCGTACA	25	4.4445667E-5	44.0	41
CGTTTTT	26690	0.0	41.70026	1
ATATCGC	85	0.0	41.411766	39
GTATGCG	170	0.0	41.411766	1
ACGTAGG	395	0.0	41.215187	2
GCGTTAG	150	0.0	41.066666	1
TCGATAT	150	0.0	41.066666	15
GCGCTAA	70	0.0	40.857143	9
TACGGGA	805	0.0	40.720497	4
TACGTGC	120	0.0	40.333336	32
GGACTAA	2720	0.0	39.955883	8
GGGACTA	2915	0.0	39.849056	7
GGATGCC	9130	0.0	39.73494	8
CCCTAGC	2160	0.0	39.62037	21
TTTACGA	50	1.3496901E-9	39.600002	32
ACGGGAT	1020	0.0	39.470585	5