##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546189_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1346804 Sequences flagged as poor quality 0 Sequence length 50 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.837252488112597 31.0 31.0 34.0 30.0 34.0 2 32.19259966557866 33.0 31.0 34.0 30.0 34.0 3 32.11593372161057 33.0 31.0 34.0 30.0 34.0 4 35.872484043706436 37.0 35.0 37.0 35.0 37.0 5 35.847518272889005 37.0 35.0 37.0 35.0 37.0 6 35.88151356841827 37.0 35.0 37.0 35.0 37.0 7 36.1283631471246 37.0 35.0 37.0 35.0 37.0 8 36.03132155829653 37.0 35.0 37.0 35.0 37.0 9 37.7737480732163 39.0 38.0 39.0 35.0 39.0 10 37.446378240634864 39.0 37.0 39.0 35.0 39.0 11 37.26887876780883 39.0 37.0 39.0 34.0 39.0 12 36.54388463354727 39.0 35.0 39.0 33.0 39.0 13 36.30820000534599 39.0 35.0 39.0 33.0 39.0 14 37.36773650805908 40.0 35.0 41.0 33.0 41.0 15 37.60679579211229 40.0 35.0 41.0 33.0 41.0 16 37.73523838658038 40.0 35.0 41.0 33.0 41.0 17 37.68366295318398 39.0 35.0 41.0 33.0 41.0 18 37.52760089812623 39.0 36.0 41.0 33.0 41.0 19 37.29182939759609 38.0 35.0 41.0 33.0 41.0 20 36.99307768613696 38.0 35.0 41.0 33.0 41.0 21 36.912581934713586 38.0 35.0 41.0 33.0 41.0 22 36.817880701275016 38.0 35.0 41.0 33.0 41.0 23 36.77518035289471 38.0 35.0 41.0 32.0 41.0 24 36.70946626235146 38.0 35.0 41.0 33.0 41.0 25 36.73262107923647 38.0 35.0 41.0 33.0 41.0 26 36.6599490349004 38.0 35.0 41.0 33.0 41.0 27 36.58167261160496 38.0 35.0 41.0 32.0 41.0 28 36.52887205562205 38.0 35.0 41.0 32.0 41.0 29 36.486416731759036 38.0 35.0 41.0 32.0 41.0 30 36.29492041900677 37.0 35.0 41.0 31.0 41.0 31 35.986875595855075 37.0 35.0 40.0 31.0 41.0 32 35.64449838283819 37.0 35.0 41.0 30.0 41.0 33 35.2476915720476 37.0 35.0 40.0 27.0 41.0 34 34.859208169859905 37.0 35.0 40.0 24.0 41.0 35 34.60080531391353 37.0 34.0 40.0 23.0 41.0 36 34.45376016109248 37.0 34.0 40.0 22.0 41.0 37 34.406584031529455 37.0 34.0 40.0 22.0 41.0 38 34.40117641468246 37.0 34.0 40.0 22.0 41.0 39 34.35152330999908 37.0 34.0 40.0 21.0 41.0 40 34.20080056192289 37.0 34.0 40.0 21.0 41.0 41 34.10844191136943 37.0 34.0 40.0 19.0 41.0 42 34.020884256358016 36.0 34.0 40.0 18.0 41.0 43 33.85479921354555 36.0 33.0 40.0 18.0 41.0 44 33.71012560105257 36.0 33.0 40.0 18.0 41.0 45 33.65547028372354 36.0 33.0 40.0 18.0 41.0 46 33.582488617497425 36.0 33.0 40.0 18.0 41.0 47 33.53219250908076 36.0 33.0 40.0 18.0 41.0 48 33.46918111321321 36.0 33.0 40.0 18.0 41.0 49 33.43180076685249 36.0 33.0 40.0 18.0 41.0 50 33.20522214071238 35.0 33.0 40.0 15.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 3.0 12 1.0 13 11.0 14 11.0 15 19.0 16 59.0 17 195.0 18 436.0 19 985.0 20 1818.0 21 2912.0 22 4653.0 23 7491.0 24 11335.0 25 18516.0 26 29304.0 27 36856.0 28 36580.0 29 32881.0 30 32702.0 31 34675.0 32 42007.0 33 54506.0 34 98053.0 35 206038.0 36 78497.0 37 90709.0 38 152951.0 39 372599.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.907481712261028 24.66877140252034 30.854303967021185 18.569442918197453 2 33.51979946599506 24.025990418798877 30.53139135315903 11.922818762047038 3 24.063857844200047 24.13194496006843 40.50723045075601 11.296966744975512 4 21.588516220623045 26.678714942931563 38.995354929150785 12.737413907294604 5 20.08310043629214 29.093320186159232 38.41702281846505 12.406556559083578 6 18.56788367126917 37.85806991960226 35.292143474477356 8.281902934651217 7 77.05441920279416 5.039486072212438 15.522080421501569 2.3840143034918224 8 78.69118297836954 3.7364753891434836 14.754114184395057 2.8182274480919274 9 73.8622694913291 5.427887057062498 17.4556208624269 3.254222589181499 10 43.594910618026084 25.731880808194806 21.574037499146126 9.099171074632984 11 39.79168461038132 18.158469977814143 29.690140510423195 12.359704901381344 12 33.574744357753616 20.294638269562608 33.79845916703544 12.332158205648334 13 17.189583636520236 38.16650381198749 32.020694919231005 12.623217632261262 14 10.457646398436594 39.06099179984616 37.13108960175349 13.350272199963767 15 10.029001992866075 22.230034956831133 55.729341463197315 12.011621587105473 16 10.896834283236462 19.823819947074707 50.32231861503232 18.957027154656505 17 11.142378549514257 22.230406206099772 36.965289678379335 29.661925566006637 18 15.893032690725601 23.693202574390927 43.5014300521828 16.912334682700674 19 21.38930386307139 23.034532121971722 36.857998639742675 18.71816537521421 20 22.468376987297333 22.24377117977078 38.17392879736027 17.11392303557162 21 17.429336414207263 26.599416099150286 38.238451920249716 17.732795566392735 22 17.709852361590848 25.11182027971405 33.07749308733862 24.100834271356486 23 13.143931856454245 28.368864363337202 34.70156013792653 23.785643642282025 24 12.248478620497117 23.991686986376635 47.99555094876463 15.764283444361615 25 11.58876867012572 27.244350328629853 43.99652807683969 17.17035292440474 26 12.112081639199172 32.072224317718096 37.62403438065227 18.191659662430464 27 12.500259874488048 34.763781515350416 35.473090368011974 17.262868242149562 28 10.73578635050089 30.14239636947915 43.286105476372214 15.835711803647747 29 12.806020772139078 25.161864681126577 40.33578753849854 21.696327008235794 30 15.037451626220296 30.393583624640257 37.876409633473024 16.692555115666423 31 20.967787443458736 29.655540078586046 33.098802795358495 16.277869682596723 32 22.835097014858878 26.533779228454918 34.242621792035074 16.38850196465113 33 21.545896804583293 27.904580027977342 32.213521789362076 18.336001378077285 34 16.33370557260002 26.677378445564464 35.06248867689731 21.92642730493821 35 17.159066946638116 26.245838295698558 34.61201481433081 21.983079943332513 36 23.429392844096096 26.001853276349046 33.93893989028842 16.629813989266438 37 16.46208356969537 31.090492751729283 35.848052129337304 16.599371549238047 38 15.416942628623021 30.426550559695396 33.82927285633247 20.327233955349108 39 17.224555317626024 30.28963382942136 32.655976667725966 19.829834185226655 40 18.66648747701967 24.918696410168074 32.94139310545558 23.473423007356676 41 14.08497450260023 26.175152434949705 32.8292015764729 26.910671485977172 42 17.087564337498254 25.787493948636918 32.115066483319026 25.0098752305458 43 17.661738456375243 24.991758266236218 35.16547322401775 22.181030053370794 44 15.217284771949 29.062877746130837 33.979628810131246 21.740208671788917 45 15.454067555486917 34.51058951413866 30.240034927131195 19.795308003243235 46 19.729893882109053 29.705732979706028 33.09620405047802 17.468169087706897 47 17.230346806216794 28.537411531299284 33.110534272247484 21.12170739023644 48 17.449755123982406 27.225193866368087 34.91859246037286 20.406458549276657 49 19.09037989195161 24.27153468507667 36.20140718322785 20.43667823974387 50 17.803629926849045 30.15345959768459 32.27559466707851 19.76731580838786 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 5395.0 1 5843.5 2 6292.0 3 18137.5 4 29983.0 5 21700.5 6 13418.0 7 14956.0 8 16494.0 9 17842.0 10 19190.0 11 19223.0 12 19256.0 13 17864.5 14 16473.0 15 14999.5 16 13526.0 17 12805.5 18 12085.0 19 12323.0 20 12561.0 21 11842.0 22 11123.0 23 11956.0 24 12789.0 25 17299.5 26 21810.0 27 23483.5 28 25157.0 29 29729.0 30 34301.0 31 44146.0 32 53991.0 33 57720.0 34 61449.0 35 68481.5 36 75514.0 37 72238.0 38 68962.0 39 78405.0 40 87848.0 41 103438.0 42 119028.0 43 120920.0 44 122812.0 45 109554.0 46 96296.0 47 92319.0 48 88342.0 49 88238.0 50 88134.0 51 82557.0 52 76980.0 53 61547.0 54 46114.0 55 36138.5 56 26163.0 57 21503.0 58 16843.0 59 15118.5 60 13394.0 61 12499.5 62 11605.0 63 9635.0 64 7665.0 65 6435.5 66 5206.0 67 4635.0 68 4064.0 69 3234.5 70 2405.0 71 2117.5 72 1830.0 73 1501.5 74 1173.0 75 821.5 76 470.0 77 438.5 78 407.0 79 264.5 80 122.0 81 101.5 82 81.0 83 57.0 84 33.0 85 21.5 86 10.0 87 7.0 88 4.0 89 2.5 90 1.0 91 1.5 92 2.0 93 1.5 94 1.0 95 1.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1346804.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.9165547959646 #Duplication Level Percentage of deduplicated Percentage of total 1 76.17021392983744 17.45558881343466 2 9.58882422348058 4.394856314925309 3 3.897116143100874 2.6792542691882817 4 2.063626948954736 1.8916488021660178 5 1.2794036604869778 1.465976204585376 6 0.8868157619693059 1.2193657201856818 7 0.5934093013116459 0.9519227738960382 8 0.45084508006308965 0.8265452785405473 9 0.3621772302007927 0.7469868907572436 >10 3.364037350004647 17.156487217054522 >50 0.7649891480285365 12.194611772746535 >100 0.5024002517631089 23.362419594554613 >500 0.06182386517809407 9.815297375109822 >1k 0.013991716856094977 4.5016637863645546 >5k 0.0 0.0 >10k+ 3.25388764095232E-4 1.3373751864907781 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 17935 1.3316711266078805 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 4283 0.3180121235161167 No Hit AGGCATGGAGTACCAGAGTGCTTTATATTTAGATTATATTTTAAGTCATG 2125 0.15778093917154984 No Hit GAGCGAGGGAGTTTTCTTTTTCTTTATTGGTTGATATTACTCTCACTGGA 1982 0.14716321008847613 No Hit AGAGATGGGATCCTGCAACTTCTCAAACTGTACTAAATTGATATTTCTTG 1846 0.13706522998149692 No Hit AGACGTGGGTGCCCTTCTTTTATTTTATGTGTATCTATAAGTGCCTACAT 1825 0.13550598305321337 No Hit CCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGTCTTCTG 1824 0.1354317331994856 No Hit AGTTTTAGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 1658 0.12310625748067276 No Hit AAGGTGGGGTTTGTAAATTAACTTTTATAAACTTTACCTTTTTATACATA 1630 0.1210272615762947 No Hit TTTATAGGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAA 1569 0.11649802049889962 No Hit TTTATAGGGAGTAATCCATGGTTTTCTTGCATTTCCTTCCACCCATCAAG 1539 0.11427052488706597 No Hit TCTTGGTGGGGTATGTGAATGTGTGTATTTTATAGTTGTTACGTATTACC 1524 0.11315677708114914 No Hit CTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGTCTTCTGC 1492 0.11078078176185993 No Hit TGTGAGGGTTTATAAAACTGAAGTACATGTGTAAATTAGAAACTAACATT 1466 0.10885028556493744 No Hit GTAGTAGGGTGTATTCTATGGGGATTCTCTGGCTTTCTCTGAGTTCTTTG 1460 0.1084047864425707 No Hit GCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGTCTTCTG 1410 0.10469229375618129 No Hit TTTTTAGGGATGCCACAACTAGATACATCAACATGATTTATCACAATTAT 1409 0.10461804390245351 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 1374 0.10201929902198092 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGC 1352 0.10038580223996958 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.12748699885061227 0.0 2 0.0 0.0 0.0 0.539425187332381 0.0 3 0.0 0.0 0.0 0.7455427812807208 0.0 4 0.0 0.0 0.0 1.074989382270917 0.0 5 0.0 0.0 0.0 1.8048654444150745 0.0 6 0.0 0.0 0.0 2.4802421139230355 0.0 7 0.0 0.0 0.0 2.953659181291413 0.0 8 0.0 0.0 0.0 4.0253815699983075 0.0 9 0.0 0.0 0.0 4.529538076809989 0.0 10 0.0 0.0 0.0 5.495528673808512 0.0 11 0.0 0.0 0.0 6.547723350984999 0.0 12 0.0 0.0 0.0 7.503021969046721 0.0 13 0.0 0.0 0.0 7.829721325448989 0.0 14 0.0 0.0 0.0 7.950674337171556 0.0 15 0.0 0.0 0.0 8.136150471783571 0.0 16 0.0 0.0 0.0 8.549796406901079 0.0 17 0.0 0.0 0.0 9.079717612956303 0.0 18 0.0 0.0 0.0 9.864167317590384 0.0 19 0.0 0.0 0.0 10.191386422968748 0.0 20 0.0 0.0 0.0 10.606146105892172 0.0 21 0.0 0.0 0.0 11.084834912875221 0.0 22 0.0 0.0 0.0 11.520236055134971 0.0 23 0.0 0.0 0.0 12.039539532107122 0.0 24 0.0 0.0 0.0 12.38606359945471 0.0 25 0.0 0.0 0.0 12.673781782649888 0.0 26 0.0 0.0 0.0 12.985334168891688 0.0 27 0.0 0.0 0.0 13.284858078829584 0.0 28 0.0 0.0 0.0 13.649796109901663 0.0 29 0.0 0.0 0.0 13.950508017499205 0.0 30 0.0 0.0 0.0 14.421400589840838 0.0 31 0.0 0.0 0.0 14.854351486927571 0.0 32 0.0 0.0 0.0 15.205776044621192 0.0 33 0.0 0.0 0.0 15.535296895465116 0.0 34 0.0 0.0 0.0 15.85575926415425 0.0 35 7.424985372778816E-5 0.0 0.0 16.32138009688121 0.0 36 7.424985372778816E-5 0.0 0.0 16.67243340530619 0.0 37 7.424985372778816E-5 0.0 0.0 17.008413993424433 0.0 38 7.424985372778816E-5 0.0 0.0 17.295463927936062 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTATGG 30 2.5280424E-6 44.000004 2 GTCGAAA 30 2.5280424E-6 44.000004 22 ACTAGGT 30 2.5280424E-6 44.000004 17 CATCGAG 60 0.0 44.000004 1 CGATGCG 30 2.5280424E-6 44.000004 10 ATTTGCG 60 0.0 44.000004 1 CTAGGTC 30 2.5280424E-6 44.000004 18 GCGTAAG 60 0.0 44.000004 1 TGCGTAG 60 0.0 44.000004 1 AGTCGAA 30 2.5280424E-6 44.000004 21 AACCGTC 20 7.8569644E-4 44.0 14 CGGAACC 25 4.4432498E-5 44.0 39 ACACGAT 40 8.314601E-9 44.0 29 CACGGTC 25 4.4432498E-5 44.0 18 CGACGGT 75 0.0 44.0 28 GCGAATG 145 0.0 44.0 1 ACGTTGC 25 4.4432498E-5 44.0 31 CGCATGT 25 4.4432498E-5 44.0 38 GAATCGT 55 1.8189894E-12 44.0 9 CCGTGAT 25 4.4432498E-5 44.0 17 >>END_MODULE