##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546188_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1380387 Sequences flagged as poor quality 0 Sequence length 50 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.773706214271794 31.0 31.0 34.0 30.0 34.0 2 32.16646853382421 33.0 31.0 34.0 30.0 34.0 3 32.2051671016896 33.0 31.0 34.0 30.0 34.0 4 35.90692610115859 37.0 35.0 37.0 35.0 37.0 5 35.808201613025915 37.0 35.0 37.0 35.0 37.0 6 35.871126720260335 37.0 35.0 37.0 35.0 37.0 7 36.10784149662377 37.0 35.0 37.0 35.0 37.0 8 36.011644560547154 37.0 35.0 37.0 35.0 37.0 9 37.74872916073536 39.0 38.0 39.0 35.0 39.0 10 37.44586047246171 39.0 37.0 39.0 35.0 39.0 11 37.26981201648523 39.0 37.0 39.0 34.0 39.0 12 36.53332145260713 39.0 35.0 39.0 33.0 39.0 13 36.24552462461614 39.0 35.0 39.0 32.0 39.0 14 37.29831344398346 40.0 35.0 41.0 33.0 41.0 15 37.5803300089033 40.0 35.0 41.0 33.0 41.0 16 37.69678213428553 40.0 35.0 41.0 33.0 41.0 17 37.652088146295206 39.0 35.0 41.0 33.0 41.0 18 37.51712671881146 39.0 36.0 41.0 33.0 41.0 19 37.28618423673941 38.0 35.0 41.0 33.0 41.0 20 36.99090544897916 38.0 35.0 41.0 33.0 41.0 21 36.89825606876912 38.0 35.0 41.0 33.0 41.0 22 36.8123077079109 38.0 35.0 41.0 33.0 41.0 23 36.75407258978822 38.0 35.0 41.0 32.0 41.0 24 36.694274866396164 38.0 35.0 41.0 32.0 41.0 25 36.709126498583366 38.0 35.0 41.0 33.0 41.0 26 36.65479173594072 38.0 35.0 41.0 33.0 41.0 27 36.561237537009546 38.0 35.0 41.0 32.0 41.0 28 36.509370198357416 38.0 35.0 41.0 32.0 41.0 29 36.477027819010175 38.0 35.0 41.0 32.0 41.0 30 36.28552500132209 37.0 35.0 41.0 31.0 41.0 31 35.984883949211344 37.0 35.0 40.0 31.0 41.0 32 35.6550010975183 37.0 35.0 40.0 30.0 41.0 33 35.23684227683976 37.0 35.0 40.0 27.0 41.0 34 34.92178642656009 37.0 35.0 40.0 24.0 41.0 35 34.634695922230506 37.0 34.0 40.0 23.0 41.0 36 34.48185762398516 37.0 34.0 40.0 22.0 41.0 37 34.36504617907877 37.0 34.0 40.0 22.0 41.0 38 34.37196742652604 37.0 34.0 40.0 22.0 41.0 39 34.32880416868603 37.0 34.0 40.0 21.0 41.0 40 34.19837697689126 37.0 34.0 40.0 21.0 41.0 41 34.12070890264832 37.0 34.0 40.0 19.0 41.0 42 34.016906128498746 36.0 34.0 40.0 18.0 41.0 43 33.87823124964231 36.0 34.0 40.0 18.0 41.0 44 33.727361964434614 36.0 33.0 40.0 18.0 41.0 45 33.66099869094681 36.0 33.0 40.0 18.0 41.0 46 33.6035894281821 36.0 33.0 40.0 18.0 41.0 47 33.530243330312445 36.0 33.0 40.0 18.0 41.0 48 33.48276099383724 36.0 33.0 40.0 18.0 41.0 49 33.44372339061437 36.0 33.0 40.0 18.0 41.0 50 33.18797047494652 35.0 33.0 40.0 15.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 0.0 9 1.0 10 1.0 11 2.0 12 5.0 13 3.0 14 11.0 15 25.0 16 64.0 17 206.0 18 474.0 19 972.0 20 1827.0 21 3065.0 22 5098.0 23 7670.0 24 11708.0 25 18662.0 26 29529.0 27 37425.0 28 37321.0 29 33824.0 30 33543.0 31 36318.0 32 43622.0 33 56191.0 34 103389.0 35 208188.0 36 80671.0 37 93879.0 38 157451.0 39 379241.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.015675314241587 24.864693741682586 30.76941466414853 18.350216279927295 2 33.55877735736428 24.072089928404136 30.50376452400667 11.865368190224915 3 24.04927024088172 24.110484958203752 40.583474054739725 11.256770746174805 4 21.641104994468943 26.64100719580813 39.022172767492016 12.69571504223091 5 20.096683031642577 29.115603088119492 38.32316589478168 12.464547985456251 6 18.656289866537428 37.80975914725363 35.178395623835925 8.355555362373016 7 77.09222123940606 5.028589808510222 15.47942714615539 2.3997618059283377 8 78.69952411896084 3.763582241791614 14.659657038207403 2.877236601040143 9 73.8220513522657 5.482810255384903 17.410769588528435 3.2843688038209575 10 43.67311485836943 25.62491533171495 21.478759217523784 9.223210592391844 11 39.79499951825104 18.154401627949262 29.637051058869723 12.413547794929974 12 33.53074174126532 20.295540308623597 33.75292580993591 12.420792140175182 13 17.219881091317145 38.11641228148338 32.02688811181213 12.636818515387352 14 10.487711054943286 38.98732746686255 37.136035039449084 13.388926438745077 15 9.979447792539338 22.144949206273314 55.785515221456016 12.090087779731336 16 10.992714361986893 19.745766947964594 50.25105278447276 19.010465905575753 17 11.199612862190095 22.158785905691662 36.929426313055686 29.71217491906255 18 15.901772473951144 23.60359812139639 43.5326470040648 16.96198240058766 19 21.370890916822603 23.079976847072597 36.87364485466757 18.675487381437232 20 22.387634771987855 22.219928179561236 38.17813410297257 17.214302945478334 21 17.34484604679702 26.580009808843464 38.3204130435885 17.754731100771014 22 17.65468669293466 25.004219831105335 33.17316085996174 24.167932615998268 23 13.129071774799387 28.344007876052153 34.68947476323669 23.837445585911777 24 12.233598259038951 23.996966068211307 47.86505523451032 15.904380438239421 25 11.639272175121903 27.14296787784875 43.89066254608309 17.327097400946258 26 12.073932889834516 31.984726022485 37.657917670914024 18.28342341676646 27 12.48954097655223 34.72794223648875 35.48200613306268 17.300510653896335 28 10.667443260476952 30.120900877797315 43.27866025976773 15.932995601958003 29 12.902830872791471 25.069056721049964 40.261897569304836 21.766214836853724 30 15.038463851079445 30.356414541719097 37.85315277527244 16.751968831929016 31 20.893416121710796 29.65595879995972 33.04573282709849 16.404892251230997 32 22.74615741817331 26.553567948698444 34.29429573011047 16.405978903017775 33 21.516429812798872 27.840091220795326 32.19488447804855 18.44859448835725 34 16.33925848330939 26.58790614516074 35.08204583207463 21.990789539455243 35 17.202060002013926 26.16374973105368 34.474390152906395 22.159800114025995 36 23.44574383850326 25.807835049156502 34.01698219412383 16.729438918216413 37 16.391417769074902 30.906115458925647 35.92775069600047 16.774716075998978 38 15.415966681807348 30.38198708043469 33.82457238441104 20.377473853346924 39 17.33412441583411 30.02875280627824 32.66308651124648 19.974036266641164 40 18.721851191006582 24.82521206009619 32.862088675132405 23.59084807376482 41 14.073661951322347 25.909473212946803 32.87628759181302 27.14057724391783 42 17.160260129949066 25.664831674016053 32.10845943927319 25.066448756761687 43 17.798486946052087 24.813041560084237 35.09718651363712 22.291284980226557 44 15.33367091982176 28.891463046232683 33.965185125620565 21.809680908324985 45 15.583600830781513 34.296251703326675 30.28665149700772 19.833495968884087 46 19.786552611695125 29.56743290106325 33.051383416389754 17.59463107085187 47 17.206406609161053 28.44803667377337 33.10289071108319 21.24266600598238 48 17.497701731470958 27.153182404644493 34.87384334972729 20.47527251415726 49 19.168609962278694 24.11019518439394 36.156382231939304 20.56481262138806 50 17.918380859860314 29.864523499569323 32.23559769832663 19.981497942243735 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 5502.0 1 6055.0 2 6608.0 3 18519.5 4 30431.0 5 22045.0 6 13659.0 7 15151.5 8 16644.0 9 18140.0 10 19636.0 11 19508.0 12 19380.0 13 18140.0 14 16900.0 15 15196.5 16 13493.0 17 12911.0 18 12329.0 19 12519.0 20 12709.0 21 12113.0 22 11517.0 23 12312.5 24 13108.0 25 17681.5 26 22255.0 27 23918.5 28 25582.0 29 30130.0 30 34678.0 31 44839.5 32 55001.0 33 58725.5 34 62450.0 35 69691.5 36 76933.0 37 73510.0 38 70087.0 39 79724.0 40 89361.0 41 105338.0 42 121315.0 43 123001.5 44 124688.0 45 111706.0 46 98724.0 47 95227.5 48 91731.0 49 91783.0 50 91835.0 51 86510.5 52 81186.0 53 64890.5 54 48595.0 55 37835.5 56 27076.0 57 22240.5 58 17405.0 59 15555.5 60 13706.0 61 12846.0 62 11986.0 63 9954.5 64 7923.0 65 6671.5 66 5420.0 67 4746.5 68 4073.0 69 3187.5 70 2302.0 71 2042.5 72 1783.0 73 1485.0 74 1187.0 75 835.5 76 484.0 77 460.5 78 437.0 79 279.0 80 121.0 81 110.0 82 99.0 83 66.5 84 34.0 85 19.5 86 5.0 87 5.0 88 5.0 89 4.5 90 4.0 91 2.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1380387.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.896635985227 #Duplication Level Percentage of deduplicated Percentage of total 1 76.01782366423126 17.405524368290777 2 9.605383572966193 4.39861942337372 3 3.991792552497201 2.741958630092056 4 2.0200264334630487 1.8500723971015918 5 1.330913211009866 1.5236717660211254 6 0.8502739052404882 1.168104725761731 7 0.6708645705618639 1.0752379307278441 8 0.4541065936917146 0.8318010699400455 9 0.3549413403529668 0.7314266399553399 >10 3.3691989159711557 17.20259773312835 >50 0.7596257267113051 12.083200753730473 >100 0.495809154247975 22.82014155226309 >500 0.06523804661155097 10.291739275975836 >1k 0.013684078069739961 4.532492353110935 >5k 0.0 0.0 >10k+ 3.1823437371488275E-4 1.3434113805270769 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 18437 1.3356399328594082 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 4331 0.3137525925700546 No Hit AGGCATGGAGTACCAGAGTGCTTTATATTTAGATTATATTTTAAGTCATG 2232 0.1616937858730921 No Hit GAGCGAGGGAGTTTTCTTTTTCTTTATTGGTTGATATTACTCTCACTGGA 2007 0.14539400907136912 No Hit CCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGTCTTCTG 1967 0.14249627097328502 No Hit AGAGATGGGATCCTGCAACTTCTCAAACTGTACTAAATTGATATTTCTTG 1877 0.13597636025259582 No Hit AGACGTGGGTGCCCTTCTTTTATTTTATGTGTATCTATAAGTGCCTACAT 1772 0.12836979774512508 No Hit AAGGTGGGGTTTGTAAATTAACTTTTATAAACTTTACCTTTTTATACATA 1700 0.12315386916857375 No Hit AGTTTTAGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 1699 0.12308142571612164 No Hit TTTATAGGGAGTAATCCATGGTTTTCTTGCATTTCCTTCCACCCATCAAG 1646 0.11924192273616023 No Hit TCTTGGTGGGGTATGTGAATGTGTGTATTTTATAGTTGTTACGTATTACC 1634 0.11837260130673499 No Hit TTTATAGGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAA 1601 0.1159819673758156 No Hit CTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGTCTTCTGC 1534 0.11112825606152477 No Hit GTAGTAGGGTGTATTCTATGGGGATTCTCTGGCTTTCTCTGAGTTCTTTG 1526 0.11054870844190796 No Hit GCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGTCTTCTG 1497 0.108447848320797 No Hit TGTGAGGGTTTATAAAACTGAAGTACATGTGTAAATTAGAAACTAACATT 1481 0.10728875308156337 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1427 0.10337680664914983 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 1422 0.10301458938688933 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGC 1393 0.10091372926577837 No Hit TTTTTAGGGATGCCACAACTAGATACATCAACATGATTTATCACAATTAT 1383 0.10018929474125735 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.13090531858094867 0.0 2 0.0 0.0 0.0 0.5515844469703062 0.0 3 0.0 0.0 0.0 0.7540638965739318 0.0 4 0.0 0.0 0.0 1.0885353165452876 0.0 5 0.0 0.0 0.0 1.8284727398910596 0.0 6 0.0 0.0 0.0 2.515888660209057 0.0 7 0.0 0.0 0.0 2.9916248124620126 0.0 8 0.0 0.0 0.0 4.086462709370633 0.0 9 0.0 0.0 0.0 4.592262894391211 0.0 10 0.0 0.0 0.0 5.612411591821714 0.0 11 0.0 0.0 0.0 6.710147226828418 0.0 12 0.0 0.0 0.0 7.705954924235015 0.0 13 0.0 0.0 0.0 8.052162183503611 0.0 14 0.0 0.0 0.0 8.178793338389886 0.0 15 0.0 0.0 0.0 8.375042651082632 0.0 16 0.0 0.0 0.0 8.818976127709114 0.0 17 0.0 0.0 0.0 9.381137318737427 0.0 18 0.0 0.0 0.0 10.207861998120817 0.0 19 0.0 0.0 0.0 10.553562153222249 0.0 20 0.0 0.0 0.0 10.989744180436356 0.0 21 0.0 0.0 0.0 11.486416490447969 0.0 22 0.0 0.0 0.0 11.930277523622 0.0 23 0.0 0.0 0.0 12.474038077727478 0.0 24 0.0 0.0 0.0 12.844441450115076 0.0 25 0.0 0.0 0.0 13.151167027797277 0.0 26 0.0 0.0 0.0 13.469773331681623 0.0 27 0.0 0.0 0.0 13.77468782305252 0.0 28 0.0 0.0 0.0 14.146395177584257 0.0 29 0.0 0.0 0.0 14.471738722546649 0.0 30 0.0 0.0 0.0 14.940085642649489 0.0 31 0.0 0.0 0.0 15.391263464521181 0.0 32 0.0 0.0 0.0 15.740440905340314 0.0 33 0.0 0.0 0.0 16.07042083125964 0.0 34 0.0 0.0 0.0 16.405471798850613 0.0 35 0.0 0.0 0.0 16.872804510619122 0.0 36 0.0 0.0 0.0 17.2390061627645 0.0 37 0.0 0.0 0.0 17.585792969652715 0.0 38 0.0 0.0 0.0 17.87824718720185 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CAGGTAA 30 2.5280897E-6 44.0 10 AAGTACG 40 8.314601E-9 44.0 1 GGTACGA 20 7.857032E-4 44.0 8 ACACGAT 20 7.857032E-4 44.0 29 CGTATTA 165 0.0 44.0 42 GATCGTA 20 7.857032E-4 44.0 1 CGTATAA 20 7.857032E-4 44.0 36 GATCGGC 25 4.4433073E-5 44.0 9 GTCGAAA 20 7.857032E-4 44.0 22 CGAGTGA 20 7.857032E-4 44.0 33 GACACGT 50 2.7284841E-11 44.0 14 GTTTACG 30 2.5280897E-6 44.0 1 GTTTACC 20 7.857032E-4 44.0 21 CGCATGT 20 7.857032E-4 44.0 38 GCTATCC 35 1.4463694E-7 44.0 23 CCGTGAT 35 1.4463694E-7 44.0 17 TTCGTAC 250 0.0 44.0 33 CGACATA 35 1.4463694E-7 44.0 20 TCGATTG 35 1.4463694E-7 44.0 31 CGCGACC 25 4.4433073E-5 44.0 10 >>END_MODULE