##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546187_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2236086 Sequences flagged as poor quality 0 Sequence length 50 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.9870139162805 33.0 31.0 34.0 30.0 34.0 2 32.365200175664086 33.0 31.0 34.0 31.0 34.0 3 32.29124416502764 34.0 31.0 34.0 30.0 34.0 4 36.01053000644877 37.0 35.0 37.0 35.0 37.0 5 36.002832180873185 37.0 35.0 37.0 35.0 37.0 6 36.05319249796296 37.0 35.0 37.0 35.0 37.0 7 36.22889101760845 37.0 35.0 37.0 35.0 37.0 8 36.13439912418395 37.0 36.0 37.0 35.0 37.0 9 37.86284561506132 39.0 38.0 39.0 35.0 39.0 10 37.55523043389208 39.0 37.0 39.0 35.0 39.0 11 37.47249926881167 39.0 37.0 39.0 35.0 39.0 12 37.185241980854045 39.0 37.0 39.0 34.0 39.0 13 37.08934540084773 39.0 37.0 39.0 33.0 39.0 14 38.32409978864856 40.0 37.0 41.0 33.0 41.0 15 38.41942215102639 40.0 37.0 41.0 34.0 41.0 16 38.473069908760216 40.0 37.0 41.0 34.0 41.0 17 38.392115956184156 40.0 37.0 41.0 34.0 41.0 18 38.1992669333827 40.0 37.0 41.0 34.0 41.0 19 38.02454780361757 40.0 36.0 41.0 34.0 41.0 20 37.75838138604687 40.0 35.0 41.0 34.0 41.0 21 37.705522059527226 39.0 35.0 41.0 34.0 41.0 22 37.625994259612554 39.0 35.0 41.0 33.0 41.0 23 37.53838179748006 39.0 35.0 41.0 33.0 41.0 24 37.49170783234634 39.0 35.0 41.0 33.0 41.0 25 37.48970433158653 39.0 35.0 41.0 33.0 41.0 26 37.42786771170697 39.0 35.0 41.0 33.0 41.0 27 37.345791709263416 39.0 35.0 41.0 33.0 41.0 28 37.284516785132595 39.0 35.0 41.0 33.0 41.0 29 37.219840829019994 39.0 35.0 41.0 33.0 41.0 30 37.04125691051239 39.0 35.0 41.0 33.0 41.0 31 36.81187172586385 39.0 35.0 41.0 32.0 41.0 32 36.49742093998174 39.0 35.0 41.0 31.0 41.0 33 36.144673326517854 39.0 35.0 41.0 30.0 41.0 34 35.72116591222341 39.0 35.0 41.0 26.0 41.0 35 35.48091128874292 39.0 35.0 41.0 24.0 41.0 36 35.34052133951914 39.0 35.0 41.0 23.0 41.0 37 35.306385800903904 39.0 35.0 41.0 23.0 41.0 38 35.233923471637496 39.0 35.0 41.0 23.0 41.0 39 35.132373262924595 39.0 35.0 41.0 23.0 41.0 40 35.01505532434799 39.0 35.0 41.0 22.0 41.0 41 34.875800394081445 39.0 35.0 41.0 21.0 41.0 42 34.81087534200384 38.0 35.0 41.0 20.0 41.0 43 34.67931868452287 38.0 35.0 41.0 19.0 41.0 44 34.564967984236745 38.0 34.0 41.0 18.0 41.0 45 34.48374212798613 38.0 34.0 40.0 20.0 41.0 46 34.409277192379896 38.0 34.0 40.0 19.0 41.0 47 34.35038589750126 38.0 34.0 40.0 19.0 41.0 48 34.24411896501297 38.0 34.0 40.0 18.0 41.0 49 34.18356986269759 38.0 34.0 40.0 18.0 41.0 50 34.05806932291513 38.0 34.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 2.0 10 3.0 11 7.0 12 7.0 13 20.0 14 27.0 15 28.0 16 112.0 17 232.0 18 604.0 19 1149.0 20 2311.0 21 3761.0 22 6392.0 23 9998.0 24 16068.0 25 26597.0 26 43504.0 27 54131.0 28 52930.0 29 46770.0 30 44519.0 31 47026.0 32 56157.0 33 72546.0 34 125315.0 35 223723.0 36 138321.0 37 174184.0 38 308004.0 39 781636.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.80272583433732 23.709732094382773 29.4516400532001 20.035902018079803 2 35.47922575428673 25.02189092906087 28.213762798031915 11.285120518620483 3 25.041255121672425 23.936825327827286 39.40850217746545 11.613417373034848 4 24.273574451072097 25.019565437107516 38.53170226905405 12.175157842766334 5 21.27301901626324 28.544608749395152 37.38948323096697 12.792889003374647 6 19.28503644314217 37.40996544855609 34.51150805469915 8.79349005360259 7 76.76028560618867 4.47509621722957 16.61098902278356 2.153629153798199 8 77.95080332330689 4.020373098351316 15.709860890860192 2.3189626874816085 9 71.77228425024798 6.213222568362755 18.27147971947412 3.7430134619151496 10 33.45492972989411 30.121113409770466 25.498527337499542 10.925429522835884 11 28.50386791921241 23.383850173919964 34.438120895171295 13.67416101169633 12 26.114961589133873 21.54662208877476 37.285014977062595 15.05340134502877 13 18.275057399402346 28.484145958608032 37.75328855866903 15.48750808332059 14 14.134832023455267 31.10121882610955 39.32098318222108 15.442965968214104 15 13.430073798592721 24.771900544075677 46.99094757536159 14.807078081970012 16 16.32244913657167 23.362562978346986 43.950724614348466 16.364263270732877 17 15.841653675216428 24.488503572760617 37.60687200760614 22.062970744416806 18 17.26051681375403 25.14648363256154 41.19349613565847 16.39950341802596 19 19.627330970275743 25.89913804746329 37.35974376656354 17.113787215697428 20 20.715616483444734 25.114687002199375 38.10358814464202 16.066108369713866 21 18.444639428000535 26.938141019620893 38.830438543061405 15.786781009317172 22 19.155256103745565 24.06888643817814 37.19409718588641 19.58176027218989 23 16.01521587273477 26.67008335099813 37.79948535074232 19.51521542552478 24 15.33890020330166 25.16763666513721 43.730250088771186 15.763213042789948 25 15.129471764502798 28.032329704671465 40.108564697422196 16.729633833403547 26 15.33116347045686 29.607000804083565 37.01145662555018 18.050379099909396 27 15.22557719157492 29.688169417455324 37.55097075872752 17.53528263224223 28 13.931262035538882 28.073159976852413 41.096496288604285 16.89908169900442 29 15.204916089989384 25.47334941500461 40.63569111384804 18.68604338115797 30 16.12634755550547 28.30271286524758 38.852485995619126 16.71845358362782 31 18.888808391090503 28.666205145955924 35.86387106757075 16.581115395382824 32 19.129899297254223 27.22261129491442 36.66464527750722 16.982844130324146 33 18.93214303922121 29.17114994682673 34.71226061967205 17.184446394280005 34 17.159581518778793 27.414643265062256 36.388448387047724 19.037326829111223 35 18.0597257887219 27.89821142836188 36.13622195210739 17.905840830808835 36 19.569104229443766 29.36027505203288 34.263530114673586 16.807090603849762 37 17.171164257546444 30.873097009685672 36.02195979939949 15.933778933368394 38 16.964463799692854 28.54000248648755 35.868164283484624 18.62736943033497 39 17.148490711001276 30.466806732835856 34.27207182550224 18.112630730660626 40 18.587523020134288 28.104241071228923 34.45913976474966 18.84909614388713 41 15.604587658971973 28.44273431343875 35.280888123265385 20.671789904323894 42 17.459525259761925 28.822415595822342 33.29979258400616 20.418266560409574 43 17.104127479891204 28.297882997344466 34.20852328577702 20.389466236987307 44 16.89845560501698 29.577395502677444 33.596248087059266 19.92790080524631 45 16.164449846741135 32.2536789729912 32.350365773051664 19.231505407216 46 18.676428366350848 30.036769605462403 33.24813983004232 18.038662198144436 47 16.96128860875655 29.96973282780716 34.46338825966443 18.60559030377186 48 16.67471644650519 27.95469405022884 36.247666681871806 19.122922821394166 49 18.317005696560866 27.808545825160568 35.59956996287263 18.274878515405938 50 17.004399651891745 29.735931444497215 34.72200979747648 18.53765910613456 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 5411.0 1 9407.0 2 13403.0 3 39746.0 4 66089.0 5 46358.5 6 26628.0 7 27016.5 8 27405.0 9 28209.5 10 29014.0 11 27978.5 12 26943.0 13 26261.0 14 25579.0 15 23353.0 16 21127.0 17 20108.5 18 19090.0 19 20639.5 20 22189.0 21 23578.5 22 24968.0 23 29000.0 24 33032.0 25 38086.0 26 43140.0 27 51595.5 28 60051.0 29 77209.5 30 94368.0 31 99367.0 32 104366.0 33 117444.5 34 130523.0 35 133466.5 36 136410.0 37 140933.0 38 145456.0 39 149350.0 40 153244.0 41 153897.5 42 154551.0 43 148887.0 44 143223.0 45 138181.0 46 133139.0 47 126511.5 48 119884.0 49 111306.0 50 102728.0 51 89649.0 52 76570.0 53 66833.0 54 57096.0 55 52815.0 56 48534.0 57 45966.0 58 43398.0 59 41088.5 60 38779.0 61 35560.0 62 32341.0 63 28975.5 64 25610.0 65 21742.0 66 17874.0 67 15149.5 68 12425.0 69 10449.5 70 8474.0 71 6953.5 72 5433.0 73 4406.5 74 3380.0 75 2791.0 76 2202.0 77 1589.5 78 977.0 79 774.5 80 572.0 81 397.5 82 223.0 83 177.5 84 132.0 85 103.0 86 74.0 87 45.0 88 16.0 89 14.0 90 12.0 91 6.5 92 1.0 93 1.5 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2236086.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.332053779952133 #Duplication Level Percentage of deduplicated Percentage of total 1 77.61727728194823 16.557359332319766 2 8.183798746282141 3.4915446995999098 3 3.1029636979201043 1.9857776544381245 4 1.6730770207382042 1.4276067593755786 5 1.132649780023864 1.2080873010660012 6 0.7935459211120344 1.0156778559614144 7 0.6082425763652506 0.9082544345196117 8 0.49613369817860864 0.8466840585274096 9 0.421826615993855 0.8098585252376519 >10 4.61278099805626 22.288969866756226 >50 0.7065173197735745 10.309155529140206 >100 0.5818842326825598 26.80737940517736 >500 0.06401993783647325 9.034064426605301 >1k 0.005070886165265208 1.613481734129011 >5k 0.0 0.0 >10k+ 2.11286923552717E-4 1.6960984171464553 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 37631 1.682895917241108 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2909 0.13009338639032667 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCC 2492 0.11144472976441873 No Hit AATGAATGATACCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTAT 2342 0.10473657989898422 No Hit TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2278 0.10187443595639882 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03595568327872899 0.0 2 0.0 0.0 0.0 0.1862182402644621 0.0 3 0.0 0.0 0.0 0.30294004792302265 0.0 4 0.0 0.0 0.0 0.5161250506465315 0.0 5 0.0 0.0 0.0 1.0146300276465217 0.0 6 0.0 0.0 0.0 1.4129152456569203 0.0 7 0.0 0.0 0.0 1.7078949557396272 0.0 8 0.0 0.0 0.0 2.2799659762638824 0.0 9 0.0 0.0 0.0 2.5098319116527716 0.0 10 0.0 0.0 0.0 3.0002871088142404 0.0 11 0.0 0.0 0.0 3.5149363664903763 0.0 12 0.0 0.0 0.0 3.9811080611389724 0.0 13 0.0 0.0 0.0 4.253011735684584 0.0 14 0.0 0.0 0.0 4.313072037479775 0.0 15 0.0 0.0 0.0 4.452064902691578 0.0 16 0.0 0.0 0.0 4.651386395693189 0.0 17 0.0 0.0 0.0 4.8680596363467235 0.0 18 0.0 0.0 0.0 5.171715220255392 0.0 19 0.0 0.0 0.0 5.360348394471411 0.0 20 0.0 0.0 0.0 5.558686025492758 0.0 21 0.0 0.0 0.0 5.80402542657125 0.0 22 0.0 0.0 0.0 6.078120430072905 0.0 23 0.0 0.0 0.0 6.3494427316301785 0.0 24 0.0 0.0 0.0 6.558379239438913 0.0 25 0.0 0.0 0.0 6.7532286325302335 0.0 26 0.0 0.0 0.0 6.940430734774959 0.0 27 0.0 0.0 0.0 7.141541067740686 0.0 28 0.0 0.0 0.0 7.336211576835596 0.0 29 0.0 0.0 0.0 7.544611432655095 0.0 30 0.0 0.0 0.0 7.810030562330787 0.0 31 0.0 0.0 0.0 8.04673881058242 0.0 32 0.0 0.0 0.0 8.269941317104978 0.0 33 0.0 0.0 0.0 8.491131378667905 0.0 34 0.0 0.0 0.0 8.713931396198536 0.0 35 4.472099910289676E-5 0.0 0.0 8.98677421172531 0.0 36 4.472099910289676E-5 0.0 0.0 9.214985470147392 0.0 37 4.472099910289676E-5 0.0 0.0 9.440245142628683 0.0 38 4.472099910289676E-5 0.0 0.0 9.693142392555563 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CAACCGA 20 7.858082E-4 44.0 40 GTGTCGA 20 7.858082E-4 44.0 39 TATTACG 85 0.0 44.0 1 TCGAGTA 75 0.0 44.0 10 CCGTTAG 40 8.3182385E-9 44.0 1 AATCGTC 25 4.4441953E-5 44.0 16 TACCGTA 30 2.5287954E-6 44.0 14 ATTACGT 105 0.0 41.904762 42 CGTTTTT 21345 0.0 41.8974 1 CGGATCG 80 0.0 41.25 6 CGACGAA 135 0.0 40.74074 44 TGCGTAG 135 0.0 40.74074 1 CCGCTTA 65 0.0 40.615383 21 TAAATCG 65 0.0 40.615383 33 TCGTACA 120 0.0 40.333332 32 ATCTCGA 100 0.0 39.6 11 TTACGCG 100 0.0 39.6 1 TTTAGCG 190 0.0 39.36842 1 GCTACGA 95 0.0 39.36842 10 TAGTGCG 95 0.0 39.36842 1 >>END_MODULE