##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546185_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3339146 Sequences flagged as poor quality 0 Sequence length 50 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.920911813978783 31.0 31.0 34.0 30.0 34.0 2 32.28523281102414 33.0 31.0 34.0 30.0 34.0 3 32.20119845014264 34.0 31.0 34.0 30.0 34.0 4 35.94488471004263 37.0 35.0 37.0 35.0 37.0 5 35.94311629380686 37.0 35.0 37.0 35.0 37.0 6 35.990103757068425 37.0 35.0 37.0 35.0 37.0 7 36.20104631543514 37.0 35.0 37.0 35.0 37.0 8 36.08953307222865 37.0 35.0 37.0 35.0 37.0 9 37.79271017200206 39.0 38.0 39.0 35.0 39.0 10 37.52563619560211 39.0 37.0 39.0 35.0 39.0 11 37.40699178772057 39.0 37.0 39.0 35.0 39.0 12 37.18111966353074 39.0 37.0 39.0 34.0 39.0 13 37.120773095875414 39.0 37.0 39.0 33.0 39.0 14 38.36889012939236 40.0 38.0 41.0 33.0 41.0 15 38.43081195012138 40.0 38.0 41.0 34.0 41.0 16 38.48726919996909 40.0 38.0 41.0 34.0 41.0 17 38.381012390593284 40.0 37.0 41.0 34.0 41.0 18 38.182955761742676 40.0 37.0 41.0 34.0 41.0 19 37.98933439867559 40.0 37.0 41.0 34.0 41.0 20 37.75584146365568 40.0 35.0 41.0 34.0 41.0 21 37.65355962272989 39.0 35.0 41.0 33.0 41.0 22 37.559236104081705 39.0 35.0 41.0 33.0 41.0 23 37.51133673100847 39.0 35.0 41.0 33.0 41.0 24 37.446344963652386 39.0 35.0 41.0 33.0 41.0 25 37.438663658312635 39.0 35.0 41.0 33.0 41.0 26 37.37737673045743 39.0 35.0 41.0 33.0 41.0 27 37.28681704843095 39.0 35.0 41.0 33.0 41.0 28 37.2124096999652 39.0 35.0 41.0 33.0 41.0 29 37.11725513050343 39.0 35.0 41.0 33.0 41.0 30 36.929420875876644 39.0 35.0 41.0 32.0 41.0 31 36.709983031589516 39.0 35.0 41.0 31.0 41.0 32 36.42492960775 39.0 35.0 41.0 30.0 41.0 33 36.052346917445355 39.0 35.0 41.0 29.0 41.0 34 35.60190060572374 39.0 35.0 41.0 24.0 41.0 35 35.35182678445327 39.0 35.0 41.0 23.0 41.0 36 35.21310209257098 39.0 35.0 41.0 22.0 41.0 37 35.1531358616844 39.0 35.0 41.0 22.0 41.0 38 35.053791298733266 39.0 35.0 41.0 21.0 41.0 39 34.957788009269436 39.0 35.0 41.0 21.0 41.0 40 34.8495214045747 39.0 35.0 41.0 20.0 41.0 41 34.720431511530194 39.0 34.0 41.0 18.0 41.0 42 34.6775828310592 39.0 34.0 41.0 18.0 41.0 43 34.53879375145621 38.0 34.0 41.0 18.0 41.0 44 34.395726032943756 38.0 34.0 41.0 18.0 41.0 45 34.337269469499084 38.0 34.0 40.0 18.0 41.0 46 34.2589353685044 38.0 34.0 40.0 18.0 41.0 47 34.22218195909972 38.0 34.0 40.0 18.0 41.0 48 34.11366499098872 38.0 34.0 40.0 18.0 41.0 49 34.032692490834485 38.0 34.0 40.0 18.0 41.0 50 33.91990047754725 38.0 34.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 4.0 10 7.0 11 12.0 12 5.0 13 11.0 14 28.0 15 72.0 16 189.0 17 420.0 18 1042.0 19 2228.0 20 4049.0 21 6807.0 22 10669.0 23 16553.0 24 25759.0 25 43038.0 26 68250.0 27 84870.0 28 82168.0 29 73314.0 30 70775.0 31 74410.0 32 86927.0 33 110082.0 34 180008.0 35 298892.0 36 207043.0 37 262828.0 38 469411.0 39 1159272.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.60189641303495 22.48736653024456 27.511585297558117 19.399151759162372 2 37.314031791362225 23.758919196704788 28.062594447801924 10.864454564131067 3 26.54079815617526 23.520445047925428 38.179372809694456 11.759383986204856 4 23.57977159429387 25.74718206391694 38.106300233652554 12.56674610813663 5 20.585982164301893 29.560432517775503 36.85331518897347 13.000270128949138 6 19.62049577945978 36.97118963950663 34.92997910244116 8.478335478592431 7 77.35247275800458 4.629686752241442 15.998701464386404 2.019139025367564 8 77.44587987467455 4.293582850225777 15.93823690248944 2.3223003726102425 9 70.8203235198461 7.758450813471468 18.165453082914016 3.2557725837684246 10 31.109002122099483 33.733535460863344 24.56433471312725 10.593127703909921 11 26.536126302952912 24.03165360244805 36.72465953869642 12.707560555902617 12 25.725559768875033 22.82934019656523 37.27767519000367 14.167424844556061 13 18.86281701968108 29.024157673848343 36.34318475442523 15.769840552045345 14 14.835619646460502 30.629178837942394 38.203660456895264 16.331541058701834 15 14.36223513437268 27.088153677616972 44.159015508755836 14.390595679254517 16 17.050677029396137 25.330997806025852 41.48635609224634 16.131969072331668 17 16.339477219624417 26.036597381486164 37.55292520902051 20.071000189868908 18 18.029370383924512 26.597668984824264 39.62381399315873 15.749146638092496 19 19.566170511861415 27.726041329130265 36.03454296397941 16.67324519502891 20 20.974195198413007 26.15294449538894 38.00597518048028 14.866885125717774 21 18.87404743608096 27.608945520800827 38.470165725008734 15.04684131810948 22 19.509119996550016 24.822843924763998 37.12682823692045 18.541207841765527 23 17.110392896866443 27.88431533092593 36.92210523289488 18.083186539312745 24 15.561254284778203 26.189690417849356 43.05768600714075 15.191369290231693 25 16.266135113588923 30.045736245135735 38.18979463611355 15.498334005161798 26 16.228969922249583 30.13878398848089 36.36681355053059 17.26543253873895 27 15.419840881470892 31.412552790444025 36.67470664654975 16.492899681535338 28 14.533506471415148 29.701336808872686 39.634116028469556 16.131040691242614 29 16.156226771755414 26.47491304662929 38.618227534824776 18.750632646790528 30 16.892043654275675 29.701486547758023 37.49207132602168 15.914398471944624 31 18.78713898703441 30.537957908998287 34.67191910746041 16.00298399650689 32 19.168523927974398 29.1389175555666 34.39169775745056 17.30086075900844 33 18.674565293041994 31.021105396409745 34.10192306655654 16.202406243991728 34 17.523043317063706 28.99151459684602 35.5008136811029 17.984628404987383 35 18.711910171043733 29.779081238136936 34.06212247083536 17.446886119983972 36 20.328431281531266 32.301103336002676 31.62652965758311 15.743935724882949 37 17.51873083716615 32.34605494937927 34.79904742110707 15.336166792347505 38 17.641247193144594 32.11623570817209 33.96245626875854 16.28006082992478 39 17.95896316004152 31.855809838803097 33.16524644325226 17.01998055790313 40 19.126267614533777 30.50798018415487 32.75328482192752 17.61246737938383 41 16.19482945639394 30.318740180872595 33.50482428740762 19.981606075325846 42 17.746064412876823 30.4161902474465 31.560614600260067 20.277130739416606 43 17.359258924287825 30.934256842917318 32.3276969620376 19.378787270757254 44 17.383247093717973 31.018739522021498 32.118002627019 19.480010757241523 45 17.110153314649914 33.826463413100235 29.92732273461538 19.13606053763447 46 17.727676477758088 33.25646737219636 31.80522804333803 17.210628106707524 47 17.92865600965037 30.88184823305121 33.4280381870095 17.76145757028893 48 17.36833310073893 30.057715355962273 34.47297602440864 18.10097551889016 49 17.362463336433926 31.481732155467295 32.88754070651598 18.268263801582798 50 16.478345061881093 31.760575907732097 33.918642670910465 17.842436359476345 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 5442.0 1 10933.0 2 16424.0 3 59471.0 4 102518.0 5 70898.5 6 39279.0 7 39818.0 8 40357.0 9 41471.5 10 42586.0 11 42258.0 12 41930.0 13 40897.0 14 39864.0 15 38058.5 16 36253.0 17 35252.0 18 34251.0 19 34727.0 20 35203.0 21 37923.0 22 40643.0 23 47214.0 24 53785.0 25 58741.5 26 63698.0 27 79484.5 28 95271.0 29 110244.5 30 125218.0 31 143825.5 32 162433.0 33 186236.5 34 210040.0 35 209968.5 36 209897.0 37 220970.5 38 232044.0 39 230138.5 40 228233.0 41 222460.0 42 216687.0 43 211006.0 44 205325.0 45 195664.5 46 186004.0 47 180942.0 48 175880.0 49 164721.5 50 153563.0 51 133525.5 52 113488.0 53 101028.0 54 88568.0 55 79921.5 56 71275.0 57 67207.5 58 63140.0 59 58979.5 60 54819.0 61 49899.0 62 44979.0 63 39616.5 64 34254.0 65 29875.5 66 25497.0 67 21658.0 68 17819.0 69 14751.5 70 11684.0 71 10287.0 72 8890.0 73 7114.5 74 5339.0 75 4248.5 76 3158.0 77 2570.5 78 1983.0 79 1335.0 80 687.0 81 580.5 82 474.0 83 322.0 84 170.0 85 114.0 86 58.0 87 37.5 88 17.0 89 10.5 90 4.0 91 4.5 92 5.0 93 4.5 94 4.0 95 4.5 96 5.0 97 3.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 3339146.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.83891972507785 #Duplication Level Percentage of deduplicated Percentage of total 1 78.47845265212882 15.569277223139066 2 8.0404583708129 3.1902801634277465 3 3.0049617909741375 1.7884558724418624 4 1.627698434292742 1.2916711429827445 5 1.0300813620927682 1.0217850726428641 6 0.7137646581432121 0.8496191853300493 7 0.5564583271943209 0.7727672458491466 8 0.4386169683128828 0.6961349459533038 9 0.38202627280532053 0.6821089703149902 >10 4.0921198803420085 18.75968325400406 >50 0.8902584226790461 12.226807801866569 >100 0.6457981620608382 26.565154606088264 >500 0.08830479313405683 11.613030216084299 >1k 0.010694352109660861 2.8909823284251908 >5k 1.5277645870944085E-4 0.19037207893270944 >10k+ 1.5277645870944085E-4 1.8918698925172408 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 62419 1.8693102967046065 No Hit GGCTCTGGGCTCCTCTACAAAAACAAAAGTTAAAAAAAAACACACAAAAA 6281 0.188101987753755 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3474 0.10403857752850579 No Hit TTTCTAGGGATTATCAAACATTGATGGGGTTAATATTACAGTCTATGAAA 3418 0.1023615020127901 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04740733109603473 0.0 2 0.0 0.0 0.0 0.16022060730498158 0.0 3 0.0 0.0 0.0 0.23715644658843907 0.0 4 0.0 0.0 0.0 0.3732990411320739 0.0 5 0.0 0.0 0.0 0.6788262627629938 0.0 6 0.0 0.0 0.0 1.0103781026645735 0.0 7 0.0 0.0 0.0 1.2221687820778127 0.0 8 0.0 0.0 0.0 1.6818671600463113 0.0 9 0.0 0.0 0.0 1.8831761174863273 0.0 10 0.0 0.0 0.0 2.219609445049722 0.0 11 0.0 0.0 0.0 2.5743708121777247 0.0 12 0.0 0.0 0.0 2.8735790528476444 0.0 13 0.0 0.0 0.0 2.9914535033808045 0.0 14 0.0 0.0 0.0 3.0400886933365596 0.0 15 0.0 0.0 0.0 3.1153474571043014 0.0 16 0.0 0.0 0.0 3.269279031225349 0.0 17 0.0 0.0 0.0 3.447108931445346 0.0 18 0.0 0.0 0.0 3.6790544648242394 0.0 19 2.9947777066351694E-5 0.0 0.0 3.813639774960424 0.0 20 2.9947777066351694E-5 0.0 0.0 3.959335710388225 0.0 21 2.9947777066351694E-5 0.0 0.0 4.16106393670717 0.0 22 2.9947777066351694E-5 0.0 0.0 4.371806443923087 0.0 23 2.9947777066351694E-5 0.0 0.0 4.601326207359606 0.0 24 2.9947777066351694E-5 0.0 0.0 4.780743339764119 0.0 25 2.9947777066351694E-5 0.0 0.0 4.9424613359224185 0.0 26 2.9947777066351694E-5 0.0 0.0 5.101603823253011 0.0 27 2.9947777066351694E-5 0.0 0.0 5.264220252723301 0.0 28 5.989555413270339E-5 0.0 0.0 5.438306680810004 0.0 29 5.989555413270339E-5 0.0 0.0 5.632667753970626 0.0 30 5.989555413270339E-5 0.0 0.0 5.8728189782657 0.0 31 5.989555413270339E-5 0.0 0.0 6.080716446660314 0.0 32 5.989555413270339E-5 0.0 0.0 6.284630860705103 0.0 33 5.989555413270339E-5 0.0 0.0 6.482615614890753 0.0 34 5.989555413270339E-5 0.0 0.0 6.684134206770234 0.0 35 5.989555413270339E-5 0.0 0.0 6.933928615280673 0.0 36 5.989555413270339E-5 0.0 0.0 7.147186735770164 0.0 37 5.989555413270339E-5 0.0 0.0 7.371854959321935 0.0 38 8.984333119905509E-5 0.0 0.0 7.61479132688418 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATTACGC 20 7.8586384E-4 44.000004 9 CGTTTTT 34275 0.0 42.20277 1 TACGTTG 80 0.0 41.250004 1 TACGGGA 1290 0.0 41.100773 4 TGCTACG 265 0.0 40.67925 1 TATACGG 430 0.0 39.90698 2 CGACGGT 290 0.0 39.448273 28 CTAAGCG 90 0.0 39.11111 1 GCCCTAC 2915 0.0 38.867924 26 GCCCTAG 2945 0.0 38.8455 20 CGAATAT 425 0.0 38.823532 14 TAACGTT 85 0.0 38.82353 12 CGGTCTA 290 0.0 38.689655 31 GCGTAAG 165 0.0 38.666668 1 CAATTAT 5875 0.0 38.645107 44 ATTAGCG 120 0.0 38.5 1 ATACTCG 355 0.0 38.422535 44 CCCTAGC 2995 0.0 38.196995 21 ACGGGAC 800 0.0 37.95 5 AGTACGG 470 0.0 37.91489 2 >>END_MODULE