##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546183_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1694345 Sequences flagged as poor quality 0 Sequence length 50 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.85654043302869 31.0 31.0 34.0 30.0 34.0 2 32.21391334114363 33.0 31.0 34.0 30.0 34.0 3 32.15767804077682 33.0 31.0 34.0 30.0 34.0 4 35.90094756380784 37.0 35.0 37.0 35.0 37.0 5 35.88987071700274 37.0 35.0 37.0 35.0 37.0 6 35.93242226347054 37.0 35.0 37.0 35.0 37.0 7 36.154659765278026 37.0 35.0 37.0 35.0 37.0 8 36.05146059391682 37.0 35.0 37.0 35.0 37.0 9 37.78746418232414 39.0 38.0 39.0 35.0 39.0 10 37.483811148260834 39.0 37.0 39.0 35.0 39.0 11 37.33112028542003 39.0 37.0 39.0 34.0 39.0 12 36.82479188122844 39.0 35.0 39.0 33.0 39.0 13 36.64111205214994 39.0 35.0 39.0 33.0 39.0 14 37.81944055077331 40.0 35.0 41.0 33.0 41.0 15 37.979783338104106 40.0 35.0 41.0 33.0 41.0 16 38.06132399245726 40.0 35.0 41.0 34.0 41.0 17 37.97770701952672 40.0 35.0 41.0 34.0 41.0 18 37.81237233267133 39.0 36.0 41.0 34.0 41.0 19 37.62028925632029 39.0 36.0 41.0 34.0 41.0 20 37.35133930811021 39.0 35.0 41.0 34.0 41.0 21 37.253878047269005 39.0 35.0 41.0 33.0 41.0 22 37.179187237546074 39.0 35.0 41.0 33.0 41.0 23 37.11660907312265 38.0 35.0 41.0 33.0 41.0 24 37.060933871200966 38.0 35.0 41.0 33.0 41.0 25 37.05132307764948 38.0 35.0 41.0 33.0 41.0 26 36.988737830843185 38.0 35.0 41.0 33.0 41.0 27 36.929397495787455 38.0 35.0 41.0 33.0 41.0 28 36.88360811995196 38.0 35.0 41.0 33.0 41.0 29 36.81534162168862 38.0 35.0 41.0 32.0 41.0 30 36.627301995756476 38.0 35.0 41.0 32.0 41.0 31 36.3569025198528 38.0 35.0 41.0 31.0 41.0 32 36.03748705251882 38.0 35.0 41.0 30.0 41.0 33 35.64078331154517 38.0 35.0 41.0 28.0 41.0 34 35.19134296734136 38.0 35.0 41.0 24.0 41.0 35 34.952642466557876 38.0 35.0 41.0 23.0 41.0 36 34.78647441931838 38.0 35.0 41.0 22.0 41.0 37 34.75049473395324 38.0 35.0 41.0 22.0 41.0 38 34.72229150497685 38.0 34.0 41.0 22.0 41.0 39 34.636818947734966 38.0 34.0 41.0 21.0 41.0 40 34.52582915521927 38.0 34.0 40.0 21.0 41.0 41 34.416393945743046 38.0 34.0 40.0 19.0 41.0 42 34.3422171989766 38.0 34.0 40.0 18.0 41.0 43 34.22785914320873 38.0 34.0 40.0 18.0 41.0 44 34.100025673637894 38.0 34.0 40.0 18.0 41.0 45 34.061815037669426 38.0 34.0 40.0 18.0 41.0 46 33.99109213294813 37.0 34.0 40.0 18.0 41.0 47 33.937248907394896 37.0 34.0 40.0 18.0 41.0 48 33.86523464819739 37.0 34.0 40.0 18.0 41.0 49 33.78809274380365 37.0 34.0 40.0 18.0 41.0 50 33.628160734679184 37.0 33.0 40.0 17.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 0.0 10 1.0 11 8.0 12 7.0 13 14.0 14 16.0 15 37.0 16 91.0 17 222.0 18 528.0 19 1085.0 20 1954.0 21 3252.0 22 5384.0 23 8479.0 24 13582.0 25 23129.0 26 37170.0 27 46316.0 28 43276.0 29 37555.0 30 36399.0 31 39540.0 32 47216.0 33 61256.0 34 108332.0 35 222789.0 36 97115.0 37 123083.0 38 212294.0 39 524213.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.21886923855531 24.21856233529771 28.458489858913033 19.104078567233945 2 33.508464923023354 25.12180223036041 29.75261826841641 11.617114578199836 3 24.71503737432459 24.715863652325826 39.24590328415996 11.323195689189628 4 22.15457890807362 26.670011125243086 39.46870324520685 11.706706721476442 5 19.621092516577203 30.286157777784332 38.39164987059897 11.7010998350395 6 19.09534362836376 37.52423502887547 35.01547795755882 8.36494338520195 7 78.13414623350026 4.792884566012235 15.158896210630065 1.9140729898574378 8 79.34558782302305 3.870581257063939 14.467478583169308 2.3163523367436976 9 73.93305377594291 6.0883114123746935 16.694828975208708 3.2838058364736815 10 37.0914424158008 33.14478456276614 21.2312722615524 8.532500759880662 11 32.619389793696094 21.484231369644316 33.16154620221974 12.734832634439858 12 30.327058538845396 20.683922105592426 35.8851355538571 13.103883801705082 13 16.226978566938847 36.64501621570577 33.209706405720205 13.918298811635173 14 12.08325341061 36.99305631379678 35.77500450026411 15.14868577532911 15 11.116449129309556 24.593515488286034 50.84749563990805 13.442539742496361 16 12.640282823155852 22.539211317647823 45.972868571630926 18.8476372875654 17 12.792908173955128 23.110346476071875 36.29567768075569 27.80106766921731 18 15.393500143123154 25.749360372297257 42.263057405664135 16.594082078915452 19 19.551567124759124 26.921081597903612 34.47078369517424 19.05656758216302 20 22.21566446030767 23.6646609751851 37.191008914949435 16.928665649557793 21 17.057092858892375 27.97854037991082 37.33401402902006 17.63035273217674 22 19.227961247561744 24.62373365518829 32.232042470689265 23.916262626560705 23 14.124160073656784 28.72880080503085 34.84449743116072 22.30254169015165 24 13.171520558091771 24.85875072668199 47.485252413174415 14.484476302051824 25 12.673511002776886 29.64349055239635 41.73866597416701 15.944332470659752 26 14.265276552296019 31.261224839097114 35.53083935089961 18.942659257707255 27 12.935677208596832 33.97938436386922 34.34530747870121 18.739630948832733 28 11.671471866709554 30.185646960920003 40.21713405475273 17.92574711761772 29 12.290295069776226 25.31981385137029 39.001797154652685 23.3880939242008 30 13.938483602808166 31.975424131449024 36.14978059368074 17.936311672062068 31 18.91728071909794 32.50270753595047 32.33461898255668 16.245392762394907 32 20.19388023100372 27.268649537136767 33.08529254667733 19.45217768518218 33 20.023076764177308 31.327268059338564 29.82975722181728 18.819897954666846 34 15.349648389200546 28.331892265152607 33.1782488218161 23.140210523830742 35 16.1243430352142 29.169561098831704 34.08060341902033 20.625492446933773 36 22.448674856655522 30.957567673643798 29.936347083976404 16.657410385724276 37 14.47326252917794 33.13103293603133 35.411147080435214 16.984557454355517 38 15.397513493414861 31.07070873995556 34.497755769928794 19.03402199670079 39 16.247871596398607 33.07059660222682 32.57783981420549 18.103691987169082 40 18.06798497354435 28.63460511289023 32.78812756551942 20.509282348046 41 13.8844214135846 29.308493842753396 33.50563196987626 23.30145277378574 42 15.786690431995845 30.13984755170877 30.849207215767745 23.22425480052764 43 16.2339429100921 28.726440010741616 32.97451227465481 22.065104804511478 44 15.028226246720708 30.337564073432503 31.88329413431149 22.750915545535292 45 14.69806916537069 36.04047581808899 28.562895986354608 20.698559030185706 46 18.768255579589756 33.48946052899498 30.688378104813363 17.053905786601902 47 16.10439432347013 31.14749357421304 32.40862988352431 20.33948221879251 48 16.334571766670898 28.148104429735383 34.47155095331824 21.045772850275476 49 17.73552611776232 27.36408464627924 35.39651015584193 19.503879080116505 50 16.58103869046741 31.529174990925696 32.34435725899979 19.545429059607105 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 4518.0 1 5668.5 2 6819.0 3 21273.5 4 35728.0 5 26578.5 6 17429.0 7 18737.0 8 20045.0 9 21604.5 10 23164.0 11 22930.0 12 22696.0 13 21638.5 14 20581.0 15 19165.0 16 17749.0 17 16307.0 18 14865.0 19 14223.0 20 13581.0 21 14901.0 22 16221.0 23 17485.5 24 18750.0 25 21986.5 26 25223.0 27 28151.0 28 31079.0 29 40423.5 30 49768.0 31 62700.5 32 75633.0 33 88643.5 34 101654.0 35 107937.5 36 114221.0 37 110030.5 38 105840.0 39 114942.5 40 124045.0 41 134613.5 42 145182.0 43 142098.5 44 139015.0 45 136102.0 46 133189.0 47 122548.5 48 111908.0 49 102041.5 50 92175.0 51 75890.0 52 59605.0 53 50115.0 54 40625.0 55 33687.5 56 26750.0 57 24251.0 58 21752.0 59 20075.5 60 18399.0 61 16707.5 62 15016.0 63 12695.0 64 10374.0 65 8726.0 66 7078.0 67 6138.0 68 5198.0 69 4255.5 70 3313.0 71 2760.0 72 2207.0 73 1825.0 74 1443.0 75 1045.5 76 648.0 77 559.0 78 470.0 79 343.5 80 217.0 81 153.0 82 89.0 83 67.5 84 46.0 85 31.5 86 17.0 87 13.5 88 10.0 89 9.5 90 9.0 91 4.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1694345.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.458931776133355 #Duplication Level Percentage of deduplicated Percentage of total 1 77.31774952093461 18.13791811095772 2 8.930021811795235 4.189775448845744 3 3.4601682451982216 2.435155523941445 4 1.807116168199389 1.6957205960534798 5 1.1433601489539413 1.3411003864930093 6 0.7883265002825534 1.1095978552467836 7 0.5940752225938426 0.9755459081704131 8 0.47496516569437536 0.891374033445138 9 0.3742348762828926 0.7901235387873076 >10 3.8150523144383963 19.855536068128483 >50 0.7204228753612079 11.70224829037948 >100 0.5107854065197055 24.572329370529435 >500 0.056894414058574316 9.095295509526164 >1k 0.006574465624546365 1.9572372647971392 >5k 0.0 0.0 >10k+ 2.5286406248255255E-4 1.2510420946983383 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 21090 1.2447287890010594 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3099 0.18290253755876165 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.09366451342554202 0.0 2 0.0 0.0 0.0 0.3615556453968938 0.0 3 0.0 0.0 0.0 0.5112890231918529 0.0 4 0.0 0.0 0.0 0.8070965476334513 0.0 5 0.0 0.0 0.0 1.4383139207186257 0.0 6 0.0 0.0 0.0 2.0059078877088194 0.0 7 0.0 0.0 0.0 2.3690570692509496 0.0 8 0.0 0.0 0.0 3.20790630007466 0.0 9 0.0 0.0 0.0 3.510087969097203 0.0 10 0.0 0.0 0.0 4.0264527000109185 0.0 11 0.0 0.0 0.0 4.5974698187205085 0.0 12 0.0 0.0 0.0 5.114365728349303 0.0 13 5.9019857230965356E-5 0.0 0.0 5.304055549489626 0.0 14 5.9019857230965356E-5 0.0 0.0 5.374466239166168 0.0 15 5.9019857230965356E-5 0.0 0.0 5.491738695484096 0.0 16 5.9019857230965356E-5 0.0 0.0 5.747353697151406 0.0 17 5.9019857230965356E-5 0.0 0.0 6.074146646639262 0.0 18 5.9019857230965356E-5 0.0 0.0 6.511306729149022 0.0 19 5.9019857230965356E-5 0.0 0.0 6.720945262033411 0.0 20 5.9019857230965356E-5 0.0 0.0 6.978980077847192 0.0 21 5.9019857230965356E-5 0.0 0.0 7.320823090928943 0.0 22 5.9019857230965356E-5 0.0 0.0 7.671637122309801 0.0 23 5.9019857230965356E-5 0.0 0.0 8.09274380365274 0.0 24 5.9019857230965356E-5 0.0 0.0 8.384656017517093 0.0 25 5.9019857230965356E-5 0.0 0.0 8.633188636316689 0.0 26 5.9019857230965356E-5 0.0 0.0 8.904561939864667 0.0 27 5.9019857230965356E-5 0.0 0.0 9.15539633309627 0.0 28 5.9019857230965356E-5 0.0 0.0 9.450849738394483 0.0 29 5.9019857230965356E-5 0.0 0.0 9.74051919768406 0.0 30 5.9019857230965356E-5 0.0 0.0 10.146457775718641 0.0 31 5.9019857230965356E-5 0.0 0.0 10.524125842139588 0.0 32 5.9019857230965356E-5 0.0 0.0 10.843482289616341 0.0 33 5.9019857230965356E-5 0.0 0.0 11.146313177068425 0.0 34 5.9019857230965356E-5 0.0 0.0 11.472574947841201 0.0 35 5.9019857230965356E-5 0.0 0.0 11.897222820617998 0.0 36 5.9019857230965356E-5 0.0 0.0 12.233990125977884 0.0 37 5.9019857230965356E-5 0.0 0.0 12.57300018591255 0.0 38 5.9019857230965356E-5 0.0 0.0 12.878959125797875 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTGCTA 20 7.8575395E-4 44.000004 44 CGACGAA 65 0.0 44.000004 21 CTAACGG 40 8.3164196E-9 44.000004 2 TAGGCGA 20 7.8575395E-4 44.000004 17 ATCGGGT 65 0.0 44.000004 4 ACGACAG 65 0.0 44.000004 1 CGAAGTT 40 8.3164196E-9 44.000004 21 GTACGAT 20 7.8575395E-4 44.000004 24 AGTCCGT 25 4.4437365E-5 44.0 44 ACCGGTC 25 4.4437365E-5 44.0 34 TCCGCAT 25 4.4437365E-5 44.0 23 ACCGCTT 25 4.4437365E-5 44.0 13 TGCGGTA 60 0.0 44.0 4 TACGCGG 50 2.7284841E-11 44.0 2 TATCTCG 30 2.5284298E-6 44.0 1 GCGATAC 75 0.0 44.0 9 CGGTCTA 45 4.802132E-10 44.0 31 CGATACT 45 4.802132E-10 44.0 10 AGTCGTA 45 4.802132E-10 44.0 33 ACGGTCC 30 2.5284298E-6 44.0 33 >>END_MODULE