SRR1546180_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546180_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2393997
Sequences flagged as poor quality	0
Sequence length	50
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	41732	1.7431934960653668	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCC	5932	0.24778644250598478	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTT	4507	0.18826255839084177	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3212	0.1341689233528697	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATG	2867	0.11975787772499297	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCTAA	80	0.0	44.000004	11
CGTTTTT	23820	0.0	42.309826	1
TCACGAC	220	0.0	42.0	25
CTAGACG	80	0.0	41.250004	2
TATACGA	80	0.0	41.250004	26
TCCGATT	65	0.0	40.615383	13
TCGTAAG	170	0.0	40.11765	1
CACGACC	105	0.0	39.809525	27
CGCTATA	50	1.3496901E-9	39.600002	27
CGTAAGG	420	0.0	39.285713	2
ATAGCGG	320	0.0	39.187504	2
CCGATGA	645	0.0	38.88372	18
CGAATCC	85	0.0	38.823532	30
TAATGCG	85	0.0	38.823532	1
GACCGAT	460	0.0	38.73913	9
ATCCTAG	3580	0.0	38.71508	14
GCGAATC	40	4.1270323E-7	38.500004	32
TAACGGG	520	0.0	38.499996	3
CCCTACA	3510	0.0	38.358974	27
GTCGTTT	155	0.0	38.322582	9