##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546180_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2393997 Sequences flagged as poor quality 0 Sequence length 50 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.778371067298746 31.0 31.0 34.0 30.0 34.0 2 32.178749597430574 33.0 31.0 34.0 30.0 34.0 3 32.23391215611381 33.0 31.0 34.0 30.0 34.0 4 35.942607279791915 37.0 35.0 37.0 35.0 37.0 5 35.844387858464316 37.0 35.0 37.0 35.0 37.0 6 35.91249696637047 37.0 35.0 37.0 35.0 37.0 7 36.10738568176986 37.0 35.0 37.0 35.0 37.0 8 35.98545737525987 37.0 35.0 37.0 35.0 37.0 9 37.712287024586914 39.0 38.0 39.0 35.0 39.0 10 37.422266193316034 39.0 37.0 39.0 34.0 39.0 11 37.33656433153425 39.0 37.0 39.0 34.0 39.0 12 37.035564372052264 39.0 35.0 39.0 33.0 39.0 13 36.87779266222974 39.0 35.0 39.0 33.0 39.0 14 38.03036052259046 40.0 37.0 41.0 33.0 41.0 15 38.14190535744197 40.0 37.0 41.0 33.0 41.0 16 38.22229351164601 40.0 37.0 41.0 33.0 41.0 17 38.10948008706778 40.0 36.0 41.0 33.0 41.0 18 37.96136837264207 39.0 36.0 41.0 33.0 41.0 19 37.76303311992454 39.0 36.0 41.0 33.0 41.0 20 37.50969362116995 39.0 35.0 41.0 33.0 41.0 21 37.447782098306725 39.0 35.0 41.0 33.0 41.0 22 37.36593446023533 39.0 35.0 41.0 33.0 41.0 23 37.29960355004622 39.0 35.0 41.0 33.0 41.0 24 37.240547920486115 39.0 35.0 41.0 33.0 41.0 25 37.24855920872081 39.0 35.0 41.0 33.0 41.0 26 37.17772620433526 39.0 35.0 41.0 33.0 41.0 27 37.10662586461052 39.0 35.0 41.0 33.0 41.0 28 37.03013746466683 39.0 35.0 41.0 33.0 41.0 29 36.95043143328918 39.0 35.0 41.0 32.0 41.0 30 36.77213755906962 39.0 35.0 41.0 32.0 41.0 31 36.562380821696934 39.0 35.0 41.0 31.0 41.0 32 36.279793165989766 39.0 35.0 41.0 30.0 41.0 33 35.881345715972074 39.0 35.0 41.0 29.0 41.0 34 35.466082037696786 39.0 35.0 41.0 25.0 41.0 35 35.168926694561435 39.0 35.0 41.0 23.0 41.0 36 34.993401411948305 38.0 35.0 41.0 22.0 41.0 37 34.9048282015391 38.0 35.0 41.0 21.0 41.0 38 34.840929207513625 38.0 35.0 41.0 21.0 41.0 39 34.74840402891065 38.0 35.0 41.0 20.0 41.0 40 34.64502670638267 38.0 34.0 41.0 20.0 41.0 41 34.523984365895195 38.0 34.0 41.0 18.0 41.0 42 34.45550015309125 38.0 34.0 41.0 18.0 41.0 43 34.36330037172144 38.0 34.0 41.0 18.0 41.0 44 34.23520121370244 38.0 34.0 40.0 18.0 41.0 45 34.187949274790235 38.0 34.0 40.0 18.0 41.0 46 34.11946506198629 38.0 34.0 40.0 18.0 41.0 47 34.05277032510901 38.0 34.0 40.0 18.0 41.0 48 34.01252048352609 38.0 34.0 40.0 18.0 41.0 49 33.90923463980949 37.0 33.0 40.0 18.0 41.0 50 33.74189483111299 37.0 33.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 2.0 11 6.0 12 8.0 13 10.0 14 24.0 15 55.0 16 151.0 17 368.0 18 833.0 19 1681.0 20 3184.0 21 5189.0 22 8300.0 23 12790.0 24 19066.0 25 31506.0 26 49567.0 27 61643.0 28 60491.0 29 54433.0 30 52833.0 31 57104.0 32 67499.0 33 85115.0 34 144802.0 35 231416.0 36 155270.0 37 190803.0 38 328165.0 39 771681.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.09389610763923 22.316485776715677 29.09264297323681 19.49697514240828 2 34.72038603222978 24.773005145787568 29.262735082792503 11.24387373919015 3 25.493097944567182 23.832778403648796 39.03893780986359 11.635185841920437 4 23.02225107216091 25.548778883181555 38.843239987351694 12.585730057305836 5 21.142173528204086 28.633285672454896 37.392319205078365 12.832221594262649 6 18.410549386653365 37.57903623103955 34.91746230258434 9.092952079722739 7 76.5246572990693 4.636973229289762 16.670196328566828 2.168173143074114 8 76.74692157091258 4.79474285055495 15.701398122052785 2.7569374564796867 9 70.91725678854233 6.47682515892877 18.095093686416483 4.510824366112405 10 34.65146364009646 28.94468957145727 25.424259094727354 10.979587693718914 11 29.698032203047873 22.4489420830519 34.07268263076353 13.780343083136696 12 29.157012310374657 20.518613849557873 35.245198719964975 15.079175120102489 13 19.417735277028335 28.43270062577355 35.84946012881387 16.300103968384256 14 15.517229136043195 28.97898368293695 37.293196273846625 18.210590907173234 15 14.236191607591822 24.554959759765783 45.75903812744962 15.44981050519278 16 16.854741254897146 22.814230761358516 41.1501768799209 19.180851103823436 17 16.39442321774004 25.295478649304908 36.34728865575019 21.962809477204857 18 18.371576906737978 25.5282274789818 39.83977423530606 16.26042137897416 19 20.01698414826752 27.04999212613884 34.59636749753655 18.336656228057095 20 21.7351984985779 23.9985680850895 38.10054899818171 16.1656844181509 21 18.04902011155402 28.53863225392513 36.58688795349367 16.82545968102717 22 19.441043576913422 23.007213459331822 36.716796219878304 20.834946743876454 23 17.26698070214791 26.900367878489405 35.9495437964208 19.883107622941885 24 16.23631942730087 23.642051347599853 43.59065612864176 16.53097309645751 25 16.721574839066214 29.043520104661784 36.90727264904676 17.327632407225238 26 15.862718290791507 28.49740413208538 36.424565277233015 19.2153122998901 27 15.833144318894302 29.09393787878598 36.086469615459 18.98644818686072 28 14.706492948821573 26.51131141768348 40.207151470950045 18.5750441625449 29 16.520697394357637 23.772043156277974 38.64420047310001 21.063058976264383 30 17.119862723303328 28.12626749323412 37.40455815107538 17.349311632387174 31 19.49718399814202 28.071839689022166 35.14795549033688 17.283020822498944 32 21.382274079708537 25.04293029606971 34.77932512029046 18.79547050393129 33 20.33386006749382 27.748614555490253 33.853885364100286 18.063640012915638 34 17.09956194598406 25.832237885009878 36.197831492687754 20.870368676318307 35 18.55060804169763 27.113275413461253 35.80952691252328 18.526589632317837 36 20.844303480747886 29.9368796201499 31.727483367773644 17.491333531328568 37 16.628007470351886 30.005133673935262 36.83571867466835 16.531140181044503 38 17.114975499133873 28.99285170365711 35.327446107910745 18.564726689298276 39 17.65587007836685 28.838089604957734 34.635172892864944 18.870867423810473 40 18.95127688129935 27.777144248718777 34.22230687841296 19.04927199156891 41 16.21175799301336 27.40525572922606 34.893736291231775 21.489249986528804 42 17.534232499038218 26.976391365569796 32.73124402411532 22.758132111276662 43 17.66125855629727 27.568413828421672 33.77552269280204 20.99480492247902 44 18.129053628722176 27.46085312554694 32.78354149984315 21.626551745887735 45 17.1219512806407 31.030907724612856 31.097073221060846 20.7500677736856 46 18.474542783470486 30.501541981882184 32.363281992416866 18.66063324223046 47 16.778467140936268 28.56812268352884 35.65509898299789 18.998311192537 48 17.69417421993428 26.03637347916476 36.02343695501707 20.24601534588389 49 17.93820125923299 26.653625714652108 35.44966848329384 19.958504542821064 50 16.956746395254463 29.03449753696433 34.39423691842555 19.614519149355658 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 4688.0 1 8285.5 2 11883.0 3 41212.0 4 70541.0 5 48707.0 6 26873.0 7 27396.5 8 27920.0 9 28758.5 10 29597.0 11 28655.5 12 27714.0 13 26825.0 14 25936.0 15 24452.5 16 22969.0 17 21439.5 18 19910.0 19 21862.5 20 23815.0 21 22315.5 22 20816.0 23 23041.5 24 25267.0 25 28568.0 26 31869.0 27 43554.0 28 55239.0 29 63559.5 30 71880.0 31 87162.0 32 102444.0 33 115045.0 34 127646.0 35 131865.0 36 136084.0 37 136394.5 38 136705.0 39 142283.0 40 147861.0 41 153664.0 42 159467.0 43 168909.0 44 178351.0 45 172749.5 46 167148.0 47 157346.0 48 147544.0 49 132323.0 50 117102.0 51 104370.0 52 91638.0 53 82719.5 54 73801.0 55 69410.5 56 65020.0 57 61544.5 58 58069.0 59 55204.5 60 52340.0 61 47498.0 62 42656.0 63 37314.5 64 31973.0 65 27599.0 66 23225.0 67 18651.0 68 14077.0 69 11755.5 70 9434.0 71 7784.5 72 6135.0 73 4876.5 74 3618.0 75 2909.0 76 2200.0 77 1734.0 78 1268.0 79 964.0 80 660.0 81 487.0 82 314.0 83 235.0 84 156.0 85 114.5 86 73.0 87 51.0 88 29.0 89 21.5 90 14.0 91 10.5 92 7.0 93 9.5 94 12.0 95 10.0 96 8.0 97 4.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2393997.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.42194870352399 #Duplication Level Percentage of deduplicated Percentage of total 1 76.75274607351001 17.97698881388354 2 8.791125095694374 4.1181056207523214 3 3.3230272259247586 2.3349531967807002 4 1.816569755605878 1.7019041452869594 5 1.1322374520913776 1.3259603761546475 6 0.8236833895505431 1.1575362058798555 7 0.6169332265190401 1.0114844869519954 8 0.4959374272697584 0.9292656785335954 9 0.43110931756932075 0.9087678289547879 >10 4.617989604940693 24.245875799832913 >50 0.6787892059444801 10.879368688429798 >100 0.46752425322967356 22.375715888467294 >500 0.04727561621856176 7.272466987756948 >1k 0.004691473365200785 1.747189094073351 >5k 1.804412832769533E-4 0.25070331404763113 >10k+ 1.804412832769533E-4 1.7637138742137122 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 41732 1.7431934960653668 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCC 5932 0.24778644250598478 No Hit GAATCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTT 4507 0.18826255839084177 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3212 0.1341689233528697 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATG 2867 0.11975787772499297 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0838764626689173 0.0 2 0.0 0.0 0.0 0.3065584459796733 0.0 3 0.0 0.0 0.0 0.4518802655141172 0.0 4 0.0 0.0 0.0 0.7445706907736309 0.0 5 0.0 0.0 0.0 1.4141621731355554 0.0 6 0.0 0.0 0.0 1.954388414020569 0.0 7 0.0 0.0 0.0 2.3174632215495676 0.0 8 0.0 0.0 0.0 3.110655527137252 0.0 9 0.0 0.0 0.0 3.436595785207751 0.0 10 0.0 0.0 0.0 4.235803135927071 0.0 11 0.0 0.0 0.0 4.8440328037169635 0.0 12 0.0 0.0 0.0 5.488060344269437 0.0 13 0.0 0.0 0.0 5.69858692387668 0.0 14 4.1771146747468774E-5 0.0 0.0 5.792613775205232 0.0 15 4.1771146747468774E-5 0.0 0.0 5.934844529880364 0.0 16 4.1771146747468774E-5 0.0 0.0 6.214669441941656 0.0 17 4.1771146747468774E-5 0.0 0.0 6.512873658571836 0.0 18 4.1771146747468774E-5 0.0 0.0 6.8995491640131545 0.0 19 4.1771146747468774E-5 0.0 0.0 7.154394930319461 0.0 20 4.1771146747468774E-5 0.0 0.0 7.408906527451789 0.0 21 4.1771146747468774E-5 0.0 0.0 7.757069035591941 0.0 22 4.1771146747468774E-5 0.0 0.0 8.13054485866106 0.0 23 4.1771146747468774E-5 0.0 0.0 8.506151010214298 0.0 24 4.1771146747468774E-5 0.0 0.0 8.803895744230257 0.0 25 4.1771146747468774E-5 0.0 0.0 9.064297073053977 0.0 26 4.1771146747468774E-5 0.0 0.0 9.327538839856524 0.0 27 4.1771146747468774E-5 0.0 0.0 9.624030439470058 0.0 28 4.1771146747468774E-5 0.0 0.0 9.899552923416362 0.0 29 4.1771146747468774E-5 0.0 0.0 10.216470613789408 0.0 30 4.1771146747468774E-5 0.0 0.0 10.582845341911456 0.0 31 4.1771146747468774E-5 0.0 0.0 10.894541638941067 0.0 32 4.1771146747468774E-5 0.0 0.0 11.198593816115894 0.0 33 4.1771146747468774E-5 0.0 0.0 11.500390351366356 0.0 34 4.1771146747468774E-5 0.0 0.0 11.823949654072248 0.0 35 4.1771146747468774E-5 0.0 0.0 12.21668197579195 0.0 36 4.1771146747468774E-5 0.0 0.0 12.513841913753442 0.0 37 4.1771146747468774E-5 0.0 0.0 12.836064539763417 0.0 38 4.1771146747468774E-5 0.0 0.0 13.198011526330234 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGCTAA 80 0.0 44.000004 11 CGTTTTT 23820 0.0 42.309826 1 TCACGAC 220 0.0 42.0 25 CTAGACG 80 0.0 41.250004 2 TATACGA 80 0.0 41.250004 26 TCCGATT 65 0.0 40.615383 13 TCGTAAG 170 0.0 40.11765 1 CACGACC 105 0.0 39.809525 27 CGCTATA 50 1.3496901E-9 39.600002 27 CGTAAGG 420 0.0 39.285713 2 ATAGCGG 320 0.0 39.187504 2 CCGATGA 645 0.0 38.88372 18 CGAATCC 85 0.0 38.823532 30 TAATGCG 85 0.0 38.823532 1 GACCGAT 460 0.0 38.73913 9 ATCCTAG 3580 0.0 38.71508 14 GCGAATC 40 4.1270323E-7 38.500004 32 TAACGGG 520 0.0 38.499996 3 CCCTACA 3510 0.0 38.358974 27 GTCGTTT 155 0.0 38.322582 9 >>END_MODULE