##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546177_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1107524 Sequences flagged as poor quality 0 Sequence length 50 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.956624867722958 33.0 31.0 34.0 30.0 34.0 2 32.31298373669555 33.0 31.0 34.0 31.0 34.0 3 32.24076047110491 34.0 31.0 34.0 30.0 34.0 4 35.98403556040321 37.0 35.0 37.0 35.0 37.0 5 35.959922313195925 37.0 35.0 37.0 35.0 37.0 6 35.99710254585905 37.0 35.0 37.0 35.0 37.0 7 36.19790722368093 37.0 35.0 37.0 35.0 37.0 8 36.103344938800426 37.0 35.0 37.0 35.0 37.0 9 37.85294765621332 39.0 38.0 39.0 35.0 39.0 10 37.60133505007566 39.0 37.0 39.0 35.0 39.0 11 37.40975545450934 39.0 37.0 39.0 35.0 39.0 12 36.691111885611505 39.0 35.0 39.0 33.0 39.0 13 36.45309176144264 39.0 35.0 39.0 33.0 39.0 14 37.55258937955295 40.0 35.0 41.0 33.0 41.0 15 37.7976125122345 40.0 35.0 41.0 33.0 41.0 16 37.90917036560833 40.0 35.0 41.0 34.0 41.0 17 37.858129485230116 40.0 35.0 41.0 34.0 41.0 18 37.6666790065046 39.0 36.0 41.0 34.0 41.0 19 37.44909275103745 38.0 36.0 41.0 34.0 41.0 20 37.13014345513054 38.0 35.0 41.0 34.0 41.0 21 37.02109480246026 38.0 35.0 41.0 33.0 41.0 22 36.9809457853735 38.0 35.0 41.0 33.0 41.0 23 36.89479144470007 38.0 35.0 41.0 33.0 41.0 24 36.81961022966545 38.0 35.0 41.0 33.0 41.0 25 36.85259642228972 38.0 35.0 41.0 33.0 41.0 26 36.78602721024556 38.0 35.0 41.0 33.0 41.0 27 36.72557344129789 38.0 35.0 41.0 33.0 41.0 28 36.69860607986825 38.0 35.0 41.0 33.0 41.0 29 36.6361243638964 38.0 35.0 41.0 33.0 41.0 30 36.460374673596235 38.0 35.0 41.0 32.0 41.0 31 36.14134682408688 38.0 35.0 41.0 31.0 41.0 32 35.76919506936193 38.0 35.0 41.0 30.0 41.0 33 35.341894171142116 38.0 35.0 41.0 27.0 41.0 34 34.906366814624334 37.0 35.0 41.0 23.0 41.0 35 34.67523322293693 37.0 35.0 41.0 23.0 41.0 36 34.51267963493342 37.0 35.0 40.0 21.0 41.0 37 34.48151733054995 37.0 34.0 40.0 21.0 41.0 38 34.444831895290754 37.0 34.0 40.0 21.0 41.0 39 34.390296733975966 37.0 34.0 40.0 21.0 41.0 40 34.27148215298269 37.0 34.0 40.0 20.0 41.0 41 34.154922150671226 37.0 34.0 40.0 18.0 41.0 42 34.07291489845818 37.0 34.0 40.0 18.0 41.0 43 33.939477609514555 36.0 34.0 40.0 18.0 41.0 44 33.786116598827654 36.0 34.0 40.0 18.0 41.0 45 33.74637840805256 36.0 34.0 40.0 18.0 41.0 46 33.6770670432424 36.0 34.0 40.0 18.0 41.0 47 33.66483254538954 36.0 33.0 40.0 18.0 41.0 48 33.58707982851839 36.0 34.0 40.0 18.0 41.0 49 33.5357455007747 36.0 34.0 40.0 17.0 41.0 50 33.35588845027286 35.0 33.0 40.0 15.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 2.0 10 2.0 11 8.0 12 4.0 13 4.0 14 9.0 15 10.0 16 44.0 17 131.0 18 304.0 19 651.0 20 1346.0 21 2233.0 22 3479.0 23 5506.0 24 8802.0 25 14933.0 26 24304.0 27 30981.0 28 29455.0 29 25354.0 30 24328.0 31 25790.0 32 31364.0 33 41044.0 34 78466.0 35 179048.0 36 61807.0 37 72642.0 38 125573.0 39 319899.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.89901076635811 24.898873523282568 28.611479299771382 19.59063641058794 2 34.78750799079749 24.58231153455817 29.929103116501317 10.70107735814303 3 23.16491561356684 24.616170845959097 40.641376620280916 11.577536920193152 4 21.298680660644827 27.10848703955851 38.6118946406579 12.980937659138764 5 20.306196524860862 29.22672556080049 39.39165200934698 11.075425904991674 6 19.14125562967484 36.55667958437018 35.336931750463194 8.965133035491782 7 75.82463224273243 6.140995590163283 16.092021482152983 1.9423506849512968 8 77.00645764787039 4.1993672371885395 16.175811991433143 2.618363123507933 9 72.52655472928802 6.669652305503086 17.797898736280207 3.005894228928673 10 42.85433092194842 25.757184494421793 22.067241883697328 9.321242699932462 11 38.60819268927806 18.298565087528576 31.461620696255792 11.631621526937565 12 35.36726969347843 18.818192653161468 33.90969405629133 11.904843597068778 13 16.126603125530462 38.578938244227665 32.95431972580278 12.34013890443909 14 11.089421087037392 38.754916372015416 37.47142274117762 12.684239799769575 15 10.152737096442154 23.167443775484774 54.66933447943341 12.010484648639668 16 11.22359425168213 20.034328827185686 51.76077448434526 16.981302436786923 17 12.28262322080605 21.114395715126715 35.97628584120976 30.626695222857474 18 15.271542648285727 24.461952968965008 43.52330062373366 16.743203759015607 19 20.616167234299212 24.756122666416257 35.88626521863183 18.7414448806527 20 22.109678887319824 21.412809112940216 39.9334009917618 16.544111007978156 21 15.98863771800882 27.267309782903126 39.680584799968216 17.06346769911984 22 19.654833665004098 23.747386061159848 32.46033494533753 24.137445328498526 23 14.361494649325884 28.401370986091496 34.37415351721498 22.86298084736764 24 12.268808621754472 23.993069224684973 49.96785622704339 13.770265926517167 25 12.651463986333479 26.224081825766305 44.337459052806075 16.786995135094138 26 12.156576290897533 32.30078987001636 37.41562259598889 18.127011243097215 27 12.970373553981673 34.66082902040949 36.510089171882505 15.85870825372633 28 10.39814938547607 28.658340586750263 43.558424016093554 17.38508601168011 29 10.797147511024592 24.10259281062984 43.326013702637596 21.774245975707977 30 13.410002853211308 32.079214536208696 38.68322492334252 15.827557687237478 31 19.001213517720608 30.365211047345248 35.12248944492399 15.511085990010148 32 20.207688501558433 25.96422289720132 37.4586013485938 16.369487252646444 33 21.31926712197659 30.020478111535283 31.779898223424503 16.880356543063627 34 14.45738421921331 27.04230337220683 35.4846486396683 23.015663768911555 35 16.259241334725026 26.3969900426537 36.57311263683676 20.770655985784504 36 23.528700055258398 27.50847837157479 33.32370224031263 15.639119332854188 37 15.16120643886724 31.75226902532135 37.88071409739202 15.205810438419393 38 14.91389802839487 31.405910842564133 33.148988193483845 20.531202935557154 39 15.849408229528208 31.76364575395206 34.2275201259747 18.159425890545037 40 19.519938168382808 25.597729710597694 32.27604999981942 22.60628212120008 41 13.581285823151463 28.419158411014116 34.20485696021034 23.794698805624076 42 16.29698318049993 27.948378545295633 33.20578154514033 22.54885672906411 43 16.65679479632044 26.81422705061019 34.87238199804248 21.65659615502689 44 13.94497997334595 29.88567290641106 35.416659142375245 20.752687977867748 45 15.17691715935727 36.557582499340874 28.8399167873563 19.425583553945557 46 19.21466261679205 30.980818474362632 33.25887294541698 16.54564596342833 47 16.46600886301335 30.2965895095727 33.45345112160098 19.783950505812967 48 16.938413975679083 26.9996857855902 36.73220625467258 19.32969398405813 49 19.193082948992526 25.758538866877828 35.812858231514625 19.23551995261502 50 17.27781971316197 30.41559370270983 32.65446166403617 19.652124920092024 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 4320.0 1 4705.0 2 5090.0 3 16195.5 4 27301.0 5 19801.5 6 12302.0 7 13458.5 8 14615.0 9 15805.5 10 16996.0 11 17231.0 12 17466.0 13 16278.5 14 15091.0 15 13812.5 16 12534.0 17 11195.0 18 9856.0 19 10482.5 20 11109.0 21 11295.5 22 11482.0 23 11520.5 24 11559.0 25 12482.0 26 13405.0 27 16419.0 28 19433.0 29 24802.0 30 30171.0 31 39443.0 32 48715.0 33 54080.0 34 59445.0 35 59314.0 36 59183.0 37 59309.5 38 59436.0 39 70244.5 40 81053.0 41 96147.0 42 111241.0 43 110839.0 44 110437.0 45 102356.5 46 94276.0 47 83884.0 48 73492.0 49 60162.5 50 46833.0 51 39695.5 52 32558.0 53 27934.0 54 23310.0 55 20105.5 56 16901.0 57 15752.0 58 14603.0 59 13207.0 60 11811.0 61 10794.0 62 9777.0 63 8729.0 64 7681.0 65 6775.0 66 5869.0 67 4709.0 68 3549.0 69 2937.0 70 2325.0 71 1694.5 72 1064.0 73 767.5 74 471.0 75 436.5 76 402.0 77 301.0 78 200.0 79 135.0 80 70.0 81 69.0 82 68.0 83 42.0 84 16.0 85 11.5 86 7.0 87 3.5 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1107524.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.89612008745292 #Duplication Level Percentage of deduplicated Percentage of total 1 77.8805540590339 17.052819641539752 2 8.999450151461842 3.9410608247490977 3 3.304298274550094 2.1705393547293705 4 1.6906137078737709 1.4807152307639257 5 1.0671361591605075 1.1683070745320874 6 0.7187828461938637 0.9443133310237227 7 0.5285458366499521 0.810117217770744 8 0.41150712485289687 0.7208327538097211 9 0.3413596381764318 0.6727006467468566 >10 3.643338504457247 18.499643245615303 >50 0.7952709891681287 11.944976721224181 >100 0.5283848415242781 23.88205890139485 >500 0.07873970187420615 11.917663440343155 >1k 0.011603745539356695 3.3109863526469594 >5k 0.0 0.0 >10k+ 4.144194835484534E-4 1.483265263110261 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 16346 1.4759048110921298 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3486 0.3147561587830151 No Hit TGAATGATACCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGC 3034 0.2739444021077647 No Hit AACAGAGGGAAGTTTGCTGTTTGAGATTTTTTTTTTCCATTCTTAAAGTT 1472 0.13290908368577115 No Hit TGGTAAGGGAAGACCCAAAGCATTCAACCAGAAGATGTTGATATTGTACC 1428 0.12893625781472906 No Hit GTAAATGGGGGGGCATACTTTCATTATTGTGGTTTGTAGTGTTAAGATGA 1350 0.1218935210433363 No Hit TATGTAGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 1340 0.12099060607264492 No Hit TGGCAGAGGGCAGTACTGATAACTCATGTACTATAAATACATATCATTTG 1273 0.11494107576901268 No Hit AGGAGAGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 1250 0.1128643713364225 No Hit AGTAAAGGGATTTCCATGATCACACACTAATAATTGTTTTCCTAATTAGC 1218 0.10997504343021008 No Hit AATCGAGGGTGGAAGGTTTTCATTGAGGATAAATTGCCATAATATGATGC 1193 0.10771775600348164 No Hit GTTTACGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAATT 1149 0.10374493013243957 No Hit GTGAATGGGCATCTACTCACAGTACTGTCTATTTTATTTTTGGTATAATT 1131 0.10211968318519508 No Hit TAGCAGGGGACACTTGCATCTGTTTTTCTTTTCAGCCTGGTTAAAATAGC 1127 0.10175851719691853 No Hit GTTCAAGGGATTTTTAAGATGGTTTAGCTGTTTAAATTTGTTTTGTCTCT 1125 0.10157793420278026 No Hit TTCTGGGATATTTATTTTACTTATTTTACTCTACTTTGTTATTTTTTTGT 1123 0.10139735120864198 No Hit AATTAAGGGTATTTTTTCCACGTATCCTATTATGGATACTGGTTTTGTTA 1122 0.10130705971157285 No Hit CTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC 1118 0.10094589372329629 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.11376728630711389 0.0 2 0.0 0.0 0.0 0.37642525128123633 0.0 3 0.0 0.0 0.0 0.5641412736879743 0.0 4 0.0 0.0 0.0 0.9151043227957136 0.0 5 0.0 0.0 0.0 1.6486324449853909 0.0 6 0.0 0.0 0.0 2.3038778392161254 0.0 7 0.0 0.0 0.0 2.677142888099942 0.0 8 0.0 0.0 0.0 3.5546859481148942 0.0 9 0.0 0.0 0.0 3.8957169325450285 0.0 10 0.0 0.0 0.0 4.463831032104045 0.0 11 0.0 0.0 0.0 5.385797508677013 0.0 12 0.0 0.0 0.0 5.915266847490438 0.0 13 0.0 0.0 0.0 6.200949144217191 0.0 14 0.0 0.0 0.0 6.26803572653956 0.0 15 0.0 0.0 0.0 6.382886510811504 0.0 16 0.0 0.0 0.0 6.6674853095734266 0.0 17 0.0 0.0 0.0 6.975740480567464 0.0 18 0.0 0.0 0.0 7.440651398976455 0.0 19 0.0 0.0 0.0 7.644168433370293 0.0 20 0.0 0.0 0.0 7.914320592601154 0.0 21 0.0 0.0 0.0 8.212372824426378 0.0 22 0.0 0.0 0.0 8.503292027983141 0.0 23 0.0 0.0 0.0 8.844864761395689 0.0 24 0.0 0.0 0.0 9.074024580957163 0.0 25 0.0 0.0 0.0 9.258490109469411 0.0 26 0.0 0.0 0.0 9.483947977651049 0.0 27 0.0 0.0 0.0 9.68385335216212 0.0 28 0.0 0.0 0.0 9.933870507546564 0.0 29 0.0 0.0 0.0 10.152556513448015 0.0 30 0.0 0.0 0.0 10.474626283493631 0.0 31 0.0 0.0 0.0 10.816560182894456 0.0 32 0.0 0.0 0.0 11.074161824032707 0.0 33 0.0 0.0 0.0 11.311538169827472 0.0 34 9.0291497069138E-5 0.0 0.0 11.56724368952727 0.0 35 9.0291497069138E-5 0.0 0.0 11.942766025837814 0.0 36 9.0291497069138E-5 0.0 0.0 12.239915342692347 0.0 37 9.0291497069138E-5 0.0 0.0 12.511692748870454 0.0 38 9.0291497069138E-5 0.0 0.0 12.761168155272482 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCTTCGT 25 4.4427354E-5 44.0 28 CGTGGTT 25 4.4427354E-5 44.0 32 GTGCACG 25 4.4427354E-5 44.0 1 CGGGTAT 125 0.0 44.0 6 TGCCCGC 20 7.856359E-4 44.0 34 GTCGATG 30 2.5276331E-6 44.0 1 AGTTTCG 20 7.856359E-4 44.0 43 CGAGTGT 20 7.856359E-4 44.0 25 CGAGTAA 20 7.856359E-4 44.0 44 CATGCAA 70 0.0 44.0 19 GGCACAC 20 7.856359E-4 44.0 8 GTTTACG 215 0.0 44.0 1 GACGTTG 30 2.5276331E-6 44.0 1 CTATACG 30 2.5276331E-6 44.0 1 ATTACCG 20 7.856359E-4 44.0 1 TTGTACG 50 2.7284841E-11 44.0 1 TACGGAC 25 4.4427354E-5 44.0 35 CCGCTAA 20 7.856359E-4 44.0 33 CCTCGAA 50 2.7284841E-11 44.0 25 TAGCCAA 35 1.4460238E-7 44.0 42 >>END_MODULE