##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546176_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1125653 Sequences flagged as poor quality 0 Sequence length 50 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.8939513331373 31.0 31.0 34.0 30.0 34.0 2 32.28830998540403 33.0 31.0 34.0 31.0 34.0 3 32.32659620682395 34.0 31.0 34.0 30.0 34.0 4 36.018022427870754 37.0 35.0 37.0 35.0 37.0 5 35.92594964878164 37.0 35.0 37.0 35.0 37.0 6 35.98771557487076 37.0 35.0 37.0 35.0 37.0 7 36.180441930150764 37.0 35.0 37.0 35.0 37.0 8 36.08884176562404 37.0 35.0 37.0 35.0 37.0 9 37.82836629049982 39.0 38.0 39.0 35.0 39.0 10 37.599168660324274 39.0 37.0 39.0 35.0 39.0 11 37.413330751128456 39.0 37.0 39.0 35.0 39.0 12 36.689847581803626 39.0 35.0 39.0 33.0 39.0 13 36.40182187583562 39.0 35.0 39.0 33.0 39.0 14 37.50675474591193 40.0 35.0 41.0 33.0 41.0 15 37.77387880634618 40.0 35.0 41.0 33.0 41.0 16 37.88286088163937 40.0 35.0 41.0 34.0 41.0 17 37.837387720727435 40.0 35.0 41.0 34.0 41.0 18 37.649636255577875 39.0 36.0 41.0 34.0 41.0 19 37.441541043287764 38.0 36.0 41.0 34.0 41.0 20 37.129500831961536 38.0 35.0 41.0 34.0 41.0 21 37.018587433249856 38.0 35.0 41.0 33.0 41.0 22 36.98169595781293 38.0 35.0 41.0 33.0 41.0 23 36.88385230617251 38.0 35.0 41.0 33.0 41.0 24 36.8110821007895 38.0 35.0 41.0 33.0 41.0 25 36.83077200522719 38.0 35.0 41.0 33.0 41.0 26 36.78623696645414 38.0 35.0 41.0 33.0 41.0 27 36.71650410917041 38.0 35.0 41.0 33.0 41.0 28 36.67491491605317 38.0 35.0 41.0 33.0 41.0 29 36.619196146592245 38.0 35.0 41.0 33.0 41.0 30 36.455645745180796 38.0 35.0 41.0 32.0 41.0 31 36.13744022358578 38.0 35.0 41.0 31.0 41.0 32 35.76962527528466 38.0 35.0 41.0 30.0 41.0 33 35.33119620344813 37.0 35.0 41.0 27.0 41.0 34 34.97183501487581 37.0 35.0 41.0 24.0 41.0 35 34.71533412161652 37.0 35.0 41.0 23.0 41.0 36 34.54571168912622 37.0 35.0 41.0 21.0 41.0 37 34.44106931709861 37.0 34.0 40.0 21.0 41.0 38 34.41274620153813 37.0 34.0 40.0 21.0 41.0 39 34.37137554823733 37.0 34.0 40.0 21.0 41.0 40 34.26349150226579 37.0 34.0 40.0 20.0 41.0 41 34.173988786953 37.0 34.0 40.0 18.0 41.0 42 34.069734634030205 37.0 34.0 40.0 18.0 41.0 43 33.9554400867763 36.0 34.0 40.0 18.0 41.0 44 33.799383113623826 36.0 34.0 40.0 18.0 41.0 45 33.75908828031374 36.0 34.0 40.0 18.0 41.0 46 33.70017225557076 36.0 34.0 40.0 18.0 41.0 47 33.6628046120785 36.0 33.0 40.0 18.0 41.0 48 33.610566488962405 36.0 34.0 40.0 18.0 41.0 49 33.55253972583025 36.0 34.0 40.0 17.0 41.0 50 33.35426992154776 35.0 33.0 40.0 15.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 2.0 12 3.0 13 2.0 14 5.0 15 21.0 16 39.0 17 128.0 18 319.0 19 704.0 20 1408.0 21 2281.0 22 3501.0 23 5341.0 24 8945.0 25 15156.0 26 24399.0 27 30900.0 28 30492.0 29 26202.0 30 24911.0 31 26563.0 32 32040.0 33 42430.0 34 81261.0 35 178767.0 36 63317.0 37 74562.0 38 128096.0 39 323856.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.011432475194397 24.900391150736507 28.655367151333493 19.432809222735603 2 34.74569871887695 24.55330372681457 30.076853168782918 10.624144385525556 3 23.07691624328279 24.68114063570212 40.60016719184331 11.641775929171779 4 21.438844830511712 27.041459490624554 38.54429384543905 12.975401833424687 5 20.365156935574287 29.13908637919501 39.43186754710377 11.063889138126937 6 19.161411198655358 36.548741041866364 35.31256968177583 8.977278077702454 7 75.77175204081541 6.128353942111823 16.116867276149932 1.9830267409228244 8 76.9229060820697 4.240649649581176 16.180830149255588 2.6556141190935394 9 72.45767567802866 6.6977123500759115 17.796958743058475 3.0476532288369507 10 42.851127301219826 25.65168839775668 22.088334504505386 9.40884979651811 11 38.54464919473408 18.42255117696128 31.417941408231485 11.614858220073149 12 35.31976550500021 18.745919035439872 33.958511193058605 11.97580426650131 13 16.224005088601906 38.46816025897857 32.92266799804203 12.385166654377503 14 11.169427878751268 38.64077117904008 37.462610591363415 12.727190350845245 15 10.216114557505731 23.22953876549878 54.52239722187922 12.031949455116276 16 11.328979712220374 20.076702145332533 51.58818925548104 17.006128886966053 17 12.339948456584755 21.175886352188463 35.86718109399611 30.616984097230677 18 15.24626150332296 24.50151156706374 43.456287150658326 16.79593977895497 19 20.609814925203416 24.73844070952594 35.99270823246595 18.659036132804694 20 22.0455149144541 21.4924137367377 39.86450531380452 16.597566035003684 21 16.007153181308983 27.221710420529238 39.70770743737191 17.06342896078987 22 19.603643396321957 23.767981784795136 32.5045107151138 24.1238641037691 23 14.334524049596101 28.30978996191544 34.45733276595896 22.8983532225295 24 12.203050140673902 24.099167327764416 49.849287480244804 13.848495051316881 25 12.692099607960891 26.205322599415627 44.258577021515514 16.84400077110797 26 12.171957077358652 32.286681597259545 37.43089566678186 18.110465658599942 27 13.006139547444906 34.591121775538284 36.47234094343461 15.930397733582197 28 10.456952542213276 28.62649502111219 43.50505884140139 17.411493595273146 29 10.855743288562284 24.15051530089646 43.2015017061208 21.792239704420457 30 13.371882809355991 31.99511750068627 38.75945784358057 15.87354184637717 31 18.901917375958664 30.369660987888807 35.265219388212884 15.46320224793964 32 20.186860426792272 25.864631462804255 37.497701334247765 16.45080677615571 33 21.183615199355398 29.99032561544277 31.79114700533823 17.0349121798636 34 14.511310323874232 26.993043149176522 35.43285541814395 23.06279110880529 35 16.259540018105046 26.423684741212433 36.44462369842216 20.872151542260358 36 23.584177361940135 27.483958200262425 33.26282611071085 15.66903832708659 37 15.154048361262307 31.643410535928922 37.84958597365263 15.352955129156143 38 14.876342887195253 31.374144607618863 33.14538316870297 20.604129336482913 39 15.840139012644217 31.676102671071817 34.27823672126312 18.205521595020848 40 19.479537655032235 25.629034880198425 32.3392732929242 22.552154171845142 41 13.604103573659025 28.399426821587113 34.25682692623748 23.739642678516383 42 16.34846617918666 27.87946196563239 33.22569210938007 22.54637974580088 43 16.673966133435435 26.82416339671284 34.76959595896782 21.732274510883904 44 14.003960367893125 29.848097060106443 35.33504552468656 20.812897047313868 45 15.237466608270934 36.4365395019602 28.80123803694389 19.52475585282498 46 19.23132617245279 30.94044079303302 33.19895207492895 16.629280959585234 47 16.477013786664273 30.23711570084209 33.42308864277002 19.862781869723616 48 16.95593579904287 26.92161794087521 36.72845894782851 19.393987312253422 49 19.224752210494707 25.74630014755879 35.799398215968864 19.22954942597763 50 17.315193936319627 30.321155809117016 32.679164893621746 19.684485360941608 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 4336.0 1 4838.5 2 5341.0 3 16605.0 4 27869.0 5 20033.0 6 12197.0 7 13364.5 8 14532.0 9 15840.0 10 17148.0 11 17344.5 12 17541.0 13 16442.5 14 15344.0 15 14041.0 16 12738.0 17 11417.5 18 10097.0 19 10667.5 20 11238.0 21 11473.0 22 11708.0 23 11733.0 24 11758.0 25 12866.5 26 13975.0 27 16807.0 28 19639.0 29 25200.0 30 30761.0 31 40032.0 32 49303.0 33 54732.0 34 60161.0 35 59878.5 36 59596.0 37 59769.0 38 59942.0 39 70930.0 40 81918.0 41 97232.0 42 112546.0 43 112361.0 44 112176.0 45 104330.5 46 96485.0 47 86031.0 48 75577.0 49 61965.0 50 48353.0 51 40931.0 52 33509.0 53 28633.0 54 23757.0 55 20750.5 56 17744.0 57 16236.5 58 14729.0 59 13357.5 60 11986.0 61 10859.5 62 9733.0 63 8744.5 64 7756.0 65 6870.0 66 5984.0 67 4808.5 68 3633.0 69 2963.0 70 2293.0 71 1665.5 72 1038.0 73 791.0 74 544.0 75 460.5 76 377.0 77 265.5 78 154.0 79 105.0 80 56.0 81 57.5 82 59.0 83 37.0 84 15.0 85 9.5 86 4.0 87 2.5 88 1.0 89 1.5 90 2.0 91 1.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1125653.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.083771656530292 #Duplication Level Percentage of deduplicated Percentage of total 1 77.78409590412016 17.17766212456243 2 9.094826809532345 4.016961570348045 3 3.3103314232579004 2.1931380977599324 4 1.7355264830258628 1.5330788222001699 5 1.0626383115004332 1.173353091232824 6 0.7231427140255647 0.9581831142974496 7 0.5296305108635203 0.8187367484969029 8 0.4340325915039134 0.766806131381161 9 0.3450182520872219 0.6857373866786474 >10 3.5842041118521086 18.280884989110053 >50 0.7776122762444134 11.801668027176323 >100 0.5289055457941222 23.867255727173458 >500 0.0779227254490577 11.878971523421619 >1k 0.011708596051930949 3.3594479359559837 >5k 0.0 0.0 >10k+ 4.0374469144589483E-4 1.4881147102050367 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 16690 1.4826949335185888 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3486 0.3096869106198802 No Hit TGAATGATACCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGC 2910 0.2585166121353561 No Hit AACAGAGGGAAGTTTGCTGTTTGAGATTTTTTTTTTCCATTCTTAAAGTT 1494 0.13272296169423436 No Hit TGGTAAGGGAAGACCCAAAGCATTCAACCAGAAGATGTTGATATTGTACC 1468 0.13041319127653014 No Hit GTAAATGGGGGGGCATACTTTCATTATTGTGGTTTGTAGTGTTAAGATGA 1370 0.12170713354826043 No Hit TATGTAGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 1343 0.11930852580679836 No Hit TGGCAGAGGGCAGTACTGATAACTCATGTACTATAAATACATATCATTTG 1278 0.11353409976253782 No Hit AGTAAAGGGATTTCCATGATCACACACTAATAATTGTTTTCCTAATTAGC 1242 0.11033595610725508 No Hit AGGAGAGGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAAT 1242 0.11033595610725508 No Hit GTTTACGGGGGAATTCAATACCTTTACAAATGCTTTAACAAGAGGAAATT 1241 0.11024711878349722 No Hit AATTAAGGGTATTTTTTCCACGTATCCTATTATGGATACTGGTTTTGTTA 1186 0.10536106597681524 No Hit AATCGAGGGTGGAAGGTTTTCATTGAGGATAAATTGCCATAATATGATGC 1175 0.10438385541547883 No Hit TAGCAGGGGACACTTGCATCTGTTTTTCTTTTCAGCCTGGTTAAAATAGC 1159 0.10296245823535317 No Hit GTGAATGGGCATCTACTCACAGTACTGTCTATTTTATTTTTGGTATAATT 1155 0.10260710894032177 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.1003861758463754 0.0 2 0.0 0.0 0.0 0.3685860562713376 0.0 3 0.0 0.0 0.0 0.5529235030688854 0.0 4 0.0 0.0 0.0 0.9075620995102398 0.0 5 0.0 0.0 0.0 1.657615623997804 0.0 6 0.0 0.0 0.0 2.325405786685595 0.0 7 0.0 0.0 0.0 2.704829996455391 0.0 8 0.0 0.0 0.0 3.5883171812272523 0.0 9 0.0 0.0 0.0 3.92874180586735 0.0 10 0.0 0.0 0.0 4.516844889144346 0.0 11 0.0 0.0 0.0 5.44244096537743 0.0 12 0.0 0.0 0.0 5.977952352989775 0.0 13 0.0 0.0 0.0 6.264363884785098 0.0 14 0.0 0.0 0.0 6.336588629000234 0.0 15 0.0 0.0 0.0 6.4677125188668265 0.0 16 0.0 0.0 0.0 6.761675223181567 0.0 17 0.0 0.0 0.0 7.075448650694308 0.0 18 0.0 0.0 0.0 7.569917194730525 0.0 19 0.0 0.0 0.0 7.772377455574675 0.0 20 0.0 0.0 0.0 8.064385738766742 0.0 21 0.0 0.0 0.0 8.370696831083825 0.0 22 0.0 0.0 0.0 8.660928367800734 0.0 23 0.0 0.0 0.0 9.010236724816618 0.0 24 0.0 0.0 0.0 9.260935652461283 0.0 25 0.0 0.0 0.0 9.46597219569441 0.0 26 0.0 0.0 0.0 9.700591567738904 0.0 27 0.0 0.0 0.0 9.903407177878085 0.0 28 0.0 0.0 0.0 10.160058206214526 0.0 29 0.0 0.0 0.0 10.38179616631413 0.0 30 0.0 0.0 0.0 10.722309628277987 0.0 31 0.0 0.0 0.0 11.067620305724766 0.0 32 0.0 0.0 0.0 11.326048080536363 0.0 33 0.0 0.0 0.0 11.566974902567665 0.0 34 0.0 0.0 0.0 11.836507342848995 0.0 35 0.0 0.0 0.0 12.219218533597832 0.0 36 0.0 0.0 0.0 12.525796137886188 0.0 37 0.0 0.0 0.0 12.8002146309742 0.0 38 0.0 0.0 0.0 13.05686565931064 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATTCGAT 65 0.0 44.000004 14 AGCCGTA 20 7.856413E-4 44.0 43 GATACTA 50 2.7284841E-11 44.0 9 ACGCCCG 20 7.856413E-4 44.0 17 GTCGATG 40 8.312782E-9 44.0 1 CGTATGG 35 1.446042E-7 44.0 2 CGAAAAT 40 8.312782E-9 44.0 39 CGACGGT 30 2.5276695E-6 44.0 28 TAGGTCG 45 4.802132E-10 44.0 3 GACGTAT 25 4.442782E-5 44.0 9 ACCGAGG 25 4.442782E-5 44.0 2 TAAACGG 35 1.446042E-7 44.0 2 AGGCGAG 30 2.5276695E-6 44.0 1 CCGCTAA 25 4.442782E-5 44.0 33 TCTAGCG 20 7.856413E-4 44.0 1 ACCCTAC 20 7.856413E-4 44.0 10 CCATGCG 25 4.442782E-5 44.0 1 ATCGTAG 25 4.442782E-5 44.0 1 GTAATCG 20 7.856413E-4 44.0 17 TGGCACG 20 7.856413E-4 44.0 1 >>END_MODULE