##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546175_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 837749 Sequences flagged as poor quality 0 Sequence length 50 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.87199387883483 31.0 31.0 34.0 30.0 34.0 2 32.24534198190627 33.0 31.0 34.0 30.0 34.0 3 32.199839092616045 33.0 31.0 34.0 30.0 34.0 4 35.94228939694347 37.0 35.0 37.0 35.0 37.0 5 35.93309093773911 37.0 35.0 37.0 35.0 37.0 6 35.96694236579214 37.0 35.0 37.0 35.0 37.0 7 36.15622817812972 37.0 35.0 37.0 35.0 37.0 8 36.0301343242427 37.0 35.0 37.0 35.0 37.0 9 37.69516645200412 39.0 38.0 39.0 35.0 39.0 10 37.44224821515753 39.0 37.0 39.0 35.0 39.0 11 37.356433728957 39.0 37.0 39.0 34.0 39.0 12 37.15420131805588 39.0 37.0 39.0 34.0 39.0 13 37.08841431025283 39.0 37.0 39.0 33.0 39.0 14 38.298191940545436 40.0 37.0 41.0 33.0 41.0 15 38.36542090769431 40.0 37.0 41.0 33.0 41.0 16 38.39377904360375 40.0 37.0 41.0 34.0 41.0 17 38.29556943666898 40.0 37.0 41.0 34.0 41.0 18 38.105134115349585 40.0 37.0 41.0 34.0 41.0 19 37.96625958371779 40.0 37.0 41.0 34.0 41.0 20 37.757506126536704 40.0 35.0 41.0 34.0 41.0 21 37.668752812596615 40.0 35.0 41.0 33.0 41.0 22 37.59315021563738 39.0 35.0 41.0 33.0 41.0 23 37.528160582704366 39.0 35.0 41.0 33.0 41.0 24 37.44641414075099 39.0 35.0 41.0 33.0 41.0 25 37.42337740779159 39.0 35.0 41.0 33.0 41.0 26 37.39173785943045 39.0 35.0 41.0 33.0 41.0 27 37.323100355834505 39.0 35.0 41.0 33.0 41.0 28 37.2385762322605 39.0 35.0 41.0 33.0 41.0 29 37.15665073906385 39.0 35.0 41.0 33.0 41.0 30 36.99576722860905 39.0 35.0 41.0 32.0 41.0 31 36.78934859964023 39.0 35.0 41.0 31.0 41.0 32 36.54404481533252 39.0 35.0 41.0 31.0 41.0 33 36.21202412655819 39.0 35.0 41.0 30.0 41.0 34 35.783555695082896 39.0 35.0 41.0 26.0 41.0 35 35.57608066377877 39.0 35.0 41.0 24.0 41.0 36 35.465321952040526 39.0 35.0 41.0 24.0 41.0 37 35.43783042414852 39.0 35.0 41.0 23.0 41.0 38 35.33274405579714 39.0 35.0 41.0 23.0 41.0 39 35.244249769322316 39.0 35.0 41.0 23.0 41.0 40 35.14281485265873 39.0 35.0 41.0 23.0 41.0 41 35.016126548644046 39.0 35.0 41.0 22.0 41.0 42 34.95611692762391 39.0 35.0 41.0 22.0 41.0 43 34.84658889476442 38.0 35.0 41.0 21.0 41.0 44 34.72847356427761 38.0 34.0 41.0 21.0 41.0 45 34.67659406337698 38.0 34.0 40.0 20.0 41.0 46 34.622949117217686 38.0 34.0 40.0 20.0 41.0 47 34.562857132625645 38.0 34.0 40.0 20.0 41.0 48 34.45661289956777 38.0 34.0 40.0 20.0 41.0 49 34.39203269714437 38.0 34.0 40.0 20.0 41.0 50 34.27646108798697 38.0 34.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 2.0 10 3.0 11 4.0 12 8.0 13 11.0 14 12.0 15 16.0 16 53.0 17 137.0 18 289.0 19 549.0 20 998.0 21 1694.0 22 2508.0 23 3812.0 24 5994.0 25 9911.0 26 15778.0 27 19262.0 28 18949.0 29 17461.0 30 17130.0 31 18745.0 32 21797.0 33 27365.0 34 46469.0 35 73896.0 36 53599.0 37 69941.0 38 123510.0 39 287845.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.67231593233773 21.49056578999199 27.349361204847757 18.48775707282253 2 36.87715532934089 23.68119806767898 27.354135904668343 12.087510698311785 3 27.220444309691803 23.73097431330864 36.738450299552724 12.310131077446824 4 24.596866125772756 26.061147193252392 35.73803131964347 13.603955361331376 5 21.72774900357983 29.59669304290426 35.33289803986636 13.342659913649554 6 21.16206644233535 36.381064017981515 33.50920144339176 8.947668096291371 7 77.05780609705293 5.069060064530069 15.375727097257055 2.4974067411599417 8 76.63452895795757 5.15751137870651 15.468714376263057 2.7392452870728583 9 69.23076004865419 8.466378354375834 17.99488868384206 4.307972913127918 10 32.920361588017414 30.305616598766456 25.20504351542049 11.56897829779564 11 27.285022124765295 24.84992521626406 34.17658511081482 13.688467548155833 12 25.765593274357833 23.360218872239777 35.798670007364976 15.075517846037418 13 19.968152752196662 27.84473631123403 36.26300956491741 15.924101371651892 14 16.01995347055025 29.634532538982437 37.794613899867386 16.550900090599928 15 15.91455197201071 26.471652010327674 42.78930801469175 14.824488002969863 16 18.278267118194115 25.143091785248327 40.63723143805603 15.941409658501533 17 18.485489090407746 25.24729960883272 36.538271009574466 19.72894029118507 18 18.98623573409219 25.632021046876808 38.755880341247796 16.625862877783202 19 22.12213920876062 26.48573737479842 35.24540166565403 16.14672175078693 20 22.53753809315201 25.692301632111764 36.19843174984393 15.5717285248923 21 20.252963596494894 27.017758302307733 37.27811074677499 15.451167354422388 22 20.038579574550372 25.070158245488805 36.189598555175834 18.701663624784988 23 18.110555786995867 27.676666877549245 36.11236778557778 18.10040954987711 24 17.09664828009344 25.820502322294626 40.23030764584619 16.85254175176574 25 17.83493623985227 28.10412187898762 37.113741705451154 16.947200175708954 26 16.858629494036997 29.584040088379695 35.84438775814713 17.71294265943618 27 16.725296001547 29.402959597683793 36.64773100296151 17.224013397807695 28 15.911329049631812 27.648376781112244 39.314042750274844 17.126251418981102 29 16.754182935461575 26.45768601335245 38.532066287157605 18.256064764028366 30 18.294739832575154 28.47129629519104 36.49553744618018 16.738426426053625 31 19.381938981723643 28.712538003626385 34.85029525550016 17.055227759149815 32 20.87427141064925 27.936768650275916 33.97509277838589 17.21386716068894 33 20.703814627054165 28.73342731534147 33.918273850520855 16.644484207083508 34 18.35036508548503 27.927816088112312 34.9363592197663 18.78545960663636 35 18.25964578889381 29.124475230647846 34.29141664150002 18.324462338958327 36 19.956454737636214 30.82677508418393 32.34345848219455 16.87331169598531 37 18.64078620207246 31.966376563863403 33.162438868921356 16.230398365142783 38 17.681549008115795 31.525671770422882 33.1506214868654 17.642157734595923 39 17.88220576807612 30.79000989556538 33.5176765355733 17.8101078007852 40 18.753827220324943 29.438292376356163 33.49750342883131 18.310376974487585 41 17.009868110854207 29.196573197938765 33.62904640888858 20.16451228231845 42 17.767612972381944 30.062226275411845 32.077746437178675 20.092414315027533 43 18.19112884646833 29.214000852283917 32.55533578673326 20.03953451451449 44 17.35281092546813 30.819493666957527 32.283774734437166 19.54392067313718 45 16.956988310341163 32.00469352992364 32.0609156203111 18.977402539424098 46 18.449678841753318 31.073746432403976 32.39526397524796 18.08131075059475 47 17.703512627290515 30.7247158755188 33.39007268286802 18.181698814322665 48 18.138249045955295 29.38624814831173 33.704606033549425 18.770896772183555 49 17.788621651592543 29.63524874395553 33.98404534054949 18.592084263902432 50 16.634934807442324 30.517732638296195 33.785179093021895 19.062153461239582 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1472.0 1 2780.0 2 4088.0 3 13237.5 4 22387.0 5 15695.5 6 9004.0 7 9073.0 8 9142.0 9 9384.0 10 9626.0 11 9361.5 12 9097.0 13 9003.5 14 8910.0 15 8136.0 16 7362.0 17 7595.0 18 7828.0 19 7845.0 20 7862.0 21 8715.0 22 9568.0 23 11406.0 24 13244.0 25 16251.0 26 19258.0 27 20951.0 28 22644.0 29 26125.5 30 29607.0 31 33581.0 32 37555.0 33 43969.5 34 50384.0 35 50466.5 36 50549.0 37 51059.0 38 51569.0 39 51086.0 40 50603.0 41 53289.5 42 55976.0 43 54369.0 44 52762.0 45 50898.0 46 49034.0 47 46191.0 48 43348.0 49 39545.5 50 35743.0 51 32375.0 52 29007.0 53 26806.0 54 24605.0 55 23195.5 56 21786.0 57 21018.0 58 20250.0 59 19699.0 60 19148.0 61 17849.5 62 16551.0 63 14673.5 64 12796.0 65 10688.0 66 8580.0 67 7160.5 68 5741.0 69 4887.5 70 4034.0 71 3369.0 72 2704.0 73 2157.0 74 1610.0 75 1360.5 76 1111.0 77 864.5 78 618.0 79 467.5 80 317.0 81 222.5 82 128.0 83 105.0 84 82.0 85 50.0 86 18.0 87 24.0 88 30.0 89 18.0 90 6.0 91 5.0 92 4.0 93 2.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 837749.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.500880162629286 #Duplication Level Percentage of deduplicated Percentage of total 1 74.64856174527921 20.52901150869556 2 7.358397991657208 4.047248427149937 3 3.259115014765409 2.688855943718678 4 2.138896730513562 2.352861706643722 5 1.5628334661776488 2.148964793374904 6 1.2755413204524129 2.1047105397746235 7 1.066793731907439 2.0536436605601383 8 0.9178595437637579 2.0193556255338154 9 0.7491882989146176 1.8543003864925487 >10 6.0634603635392805 31.661456785215325 >50 0.605263767691309 11.572791227867352 >100 0.3510355423611594 14.861434503728974 >500 0.0021803449836096857 0.41972984275207914 >1k 4.3606899672193715E-4 0.1646540211710299 >5k 0.0 0.0 >10k+ 4.3606899672193715E-4 1.52098102732132 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12683 1.5139379456137816 No Hit GGCTCTGGGCTCCTCTACAAAAACAAAAGTTAAAAAAAAACACACAAAAA 1373 0.1638915713417742 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 929 0.11089240333321795 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.030319343860750653 0.0 2 0.0 0.0 0.0 0.10337225111578767 0.0 3 0.0 0.0 0.0 0.16210105890905271 0.0 4 0.0 0.0 0.0 0.28767566419058693 0.0 5 0.0 0.0 0.0 0.5636533138207267 0.0 6 0.0 0.0 0.0 0.9102965207956082 0.0 7 0.0 0.0 0.0 1.117279758018213 0.0 8 0.0 0.0 0.0 1.6191007091622909 0.0 9 0.0 0.0 0.0 1.8548515128039544 0.0 10 0.0 0.0 0.0 2.2231002364670087 0.0 11 0.0 0.0 0.0 2.5588810013500463 0.0 12 0.0 0.0 0.0 2.856822270154903 0.0 13 0.0 0.0 0.0 2.9680727759746652 0.0 14 0.0 0.0 0.0 3.013313056774762 0.0 15 0.0 0.0 0.0 3.0743098469828074 0.0 16 0.0 0.0 0.0 3.1964227948944135 0.0 17 0.0 0.0 0.0 3.3319049023036733 0.0 18 0.0 0.0 0.0 3.520028075234945 0.0 19 0.0 0.0 0.0 3.6322335210188252 0.0 20 0.0 0.0 0.0 3.761389151165803 0.0 21 0.0 0.0 0.0 3.9254000900030914 0.0 22 0.0 0.0 0.0 4.110061605564435 0.0 23 0.0 0.0 0.0 4.295200591107838 0.0 24 0.0 0.0 0.0 4.444648695492325 0.0 25 0.0 0.0 0.0 4.572252548197611 0.0 26 0.0 0.0 0.0 4.707376553120326 0.0 27 0.0 0.0 0.0 4.843574865502674 0.0 28 0.0 0.0 0.0 4.985502817669731 0.0 29 0.0 0.0 0.0 5.151423636435257 0.0 30 0.0 0.0 0.0 5.359958651099554 0.0 31 0.0 0.0 0.0 5.544023329183323 0.0 32 0.0 0.0 0.0 5.711854027877085 0.0 33 0.0 0.0 0.0 5.875029394245771 0.0 34 0.0 0.0 0.0 6.058377867356452 0.0 35 0.0 0.0 0.0 6.266316044543174 0.0 36 0.0 0.0 0.0 6.459691387277096 0.0 37 0.0 0.0 0.0 6.647098355235279 0.0 38 0.0 0.0 0.0 6.864466564567669 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGACTT 20 7.8552583E-4 44.0 19 CTAACGT 35 1.44546E-7 44.0 37 TACGCAT 35 1.44546E-7 44.0 27 TCATCGG 20 7.8552583E-4 44.0 43 TAGTGCG 25 4.4418033E-5 44.0 1 TAAGACG 20 7.8552583E-4 44.0 1 TGATGCG 30 2.526891E-6 44.0 1 GCGTAAG 45 4.802132E-10 44.0 1 CGTTTTT 7160 0.0 42.310055 1 TTCACGG 75 0.0 41.066666 2 ATCGGGT 70 0.0 40.857143 4 CGGGTAT 125 0.0 40.479996 6 TTAGCGG 120 0.0 40.333332 2 GTTCACG 60 3.6379788E-12 40.333332 1 GGTACGG 55 7.8216544E-11 40.0 2 GCTACGA 55 7.8216544E-11 40.0 10 ATAGGGC 300 0.0 39.6 4 CACGGGA 140 0.0 39.285713 4 CGACAAT 230 0.0 39.217392 20 GCGTTAG 45 2.3495886E-8 39.11111 1 >>END_MODULE