##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546174_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 853843 Sequences flagged as poor quality 0 Sequence length 50 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.809828036301756 31.0 31.0 34.0 30.0 34.0 2 32.21505944301236 33.0 31.0 34.0 30.0 34.0 3 32.27702750974125 34.0 31.0 34.0 30.0 34.0 4 35.97196908565158 37.0 35.0 37.0 35.0 37.0 5 35.885784623168426 37.0 35.0 37.0 35.0 37.0 6 35.94827269181805 37.0 35.0 37.0 35.0 37.0 7 36.13089408708627 37.0 35.0 37.0 35.0 37.0 8 36.00449262920701 37.0 35.0 37.0 35.0 37.0 9 37.66160406538439 39.0 38.0 39.0 35.0 39.0 10 37.43986657968737 39.0 37.0 39.0 34.0 39.0 11 37.34689164167183 39.0 37.0 39.0 34.0 39.0 12 37.1311646286261 39.0 37.0 39.0 34.0 39.0 13 37.047030894438436 39.0 37.0 39.0 33.0 39.0 14 38.242872518718315 40.0 37.0 41.0 33.0 41.0 15 38.33346411459718 40.0 37.0 41.0 33.0 41.0 16 38.34319892532936 40.0 37.0 41.0 34.0 41.0 17 38.249935878141535 40.0 37.0 41.0 34.0 41.0 18 38.07940335635474 39.0 37.0 41.0 34.0 41.0 19 37.94636718928421 40.0 37.0 41.0 34.0 41.0 20 37.74149580192143 40.0 35.0 41.0 34.0 41.0 21 37.64297651910246 39.0 35.0 41.0 33.0 41.0 22 37.58310134298694 39.0 35.0 41.0 33.0 41.0 23 37.50113896817096 39.0 35.0 41.0 33.0 41.0 24 37.42174146769371 39.0 35.0 41.0 33.0 41.0 25 37.390514415413605 39.0 35.0 41.0 33.0 41.0 26 37.375762288851696 39.0 35.0 41.0 33.0 41.0 27 37.30179435797916 39.0 35.0 41.0 33.0 41.0 28 37.206987701486106 39.0 35.0 41.0 33.0 41.0 29 37.124436225395065 39.0 35.0 41.0 33.0 41.0 30 36.963509685035774 39.0 35.0 41.0 32.0 41.0 31 36.7697914019322 39.0 35.0 41.0 31.0 41.0 32 36.520990392847395 39.0 35.0 41.0 31.0 41.0 33 36.179826970532055 39.0 35.0 41.0 30.0 41.0 34 35.830693698958704 39.0 35.0 41.0 26.0 41.0 35 35.590331009330754 39.0 35.0 41.0 25.0 41.0 36 35.462813421202725 39.0 35.0 41.0 24.0 41.0 37 35.36592909937775 39.0 35.0 41.0 23.0 41.0 38 35.27342848743856 39.0 35.0 41.0 23.0 41.0 39 35.18961448416161 39.0 35.0 41.0 23.0 41.0 40 35.11220915320498 39.0 35.0 41.0 23.0 41.0 41 35.006504708711084 39.0 35.0 41.0 22.0 41.0 42 34.92854658291981 39.0 35.0 41.0 21.0 41.0 43 34.84243707566848 38.0 35.0 41.0 21.0 41.0 44 34.722071856301454 38.0 34.0 41.0 21.0 41.0 45 34.66525579058445 38.0 34.0 40.0 20.0 41.0 46 34.62699934297055 38.0 34.0 40.0 20.0 41.0 47 34.55092212502767 38.0 34.0 40.0 20.0 41.0 48 34.464066578984664 38.0 34.0 40.0 20.0 41.0 49 34.39336388539814 38.0 34.0 40.0 20.0 41.0 50 34.252006516420465 38.0 34.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 2.0 10 4.0 11 6.0 12 2.0 13 9.0 14 12.0 15 26.0 16 63.0 17 141.0 18 274.0 19 570.0 20 1024.0 21 1655.0 22 2672.0 23 4035.0 24 6166.0 25 9991.0 26 15868.0 27 19581.0 28 19490.0 29 18172.0 30 17803.0 31 19202.0 32 22388.0 33 28629.0 34 48459.0 35 74444.0 36 54807.0 37 71562.0 38 125788.0 39 290997.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.70074240814763 21.56977336582955 27.400236343215322 18.329247882807493 2 37.041353035628326 23.553393305326622 27.324109935901564 12.081143723143482 3 27.112478523569322 23.745114734207576 36.79973953056944 12.342667211653664 4 24.725857095508193 25.939663380738615 35.744159055001916 13.59032046875128 5 21.695791849321246 29.487153961559677 35.45300482641422 13.364049362704852 6 21.138546547784546 36.30971970256827 33.566006865430765 8.985726884216419 7 76.99694206077699 5.103162993665112 15.356687353529864 2.543207592028043 8 76.57613870465647 5.187604747008525 15.470525611851361 2.765730936483639 9 69.23169716212465 8.421805882346051 17.99581421877324 4.350682736756055 10 32.92221169465581 30.35183283109424 25.13307481586193 11.592880658388017 11 27.377281303471477 24.81334390514415 34.11294582259268 13.696428968791686 12 25.816924188638897 23.362843051942804 35.7501320500373 15.070100709380998 13 20.046893866905275 27.814129763902734 36.1943589161005 15.944617453091494 14 15.988068064035192 29.558829901984325 37.881554337272775 16.571547696707707 15 15.775851063954379 26.57104409124394 42.7814012646353 14.871703580166376 16 18.35372545069761 25.162119968190872 40.55347411643593 15.93068046467559 17 18.393311182500767 25.167273140378267 36.611063157981036 19.828352519139937 18 19.08161102216684 25.603301777961523 38.64750311239889 16.667584087472758 19 21.988351488505497 26.58954866409867 35.2510941707082 16.171005676687635 20 22.47825419895695 25.80532955121726 36.123619916073565 15.592796333752224 21 20.264146921623766 26.904126402629053 37.3296964430229 15.502030232724284 22 19.93633489997576 25.113399067510066 36.300116063491764 18.650149969022408 23 18.13377869233571 27.639858849929084 36.082043185925286 18.144319271809923 24 17.245090725109886 25.869509968460243 40.06661646227702 16.818782844152846 25 17.825056831290997 28.116644394812628 37.14711018301959 16.911188590876776 26 16.86164786734798 29.528613574158246 35.92170926036754 17.68802929812624 27 16.707169819275908 29.45705475128332 36.50284654204579 17.33292888739499 28 15.834409838811117 27.73203036155359 39.210955644070395 17.2226041555649 29 16.754368191810435 26.58498107965984 38.40670943018799 18.253941298341733 30 18.326319944064657 28.499267429726544 36.389242518823714 16.78517010738508 31 19.214070970892774 28.76688103082183 34.895056819579246 17.123991178706156 32 20.857815781121353 27.966616813629674 33.99032374804267 17.1852436572063 33 20.625220327390398 28.697078971192596 33.948512782794964 16.729187918622042 34 18.34353622387254 27.981256507343854 34.85617379307437 18.819033475709233 35 18.38417601362311 29.0109540044247 34.272342807752715 18.332527174199473 36 19.96233499601215 30.90603307633839 32.29762380203386 16.8340081256156 37 18.6613932537949 31.976019010520666 33.11112230234364 16.25146543334079 38 17.75630882960919 31.43528728349357 33.1750684844872 17.633335402410044 39 17.80046214585117 30.858014880955864 33.51494361375569 17.82657935943727 40 18.784718033643188 29.42379336716469 33.54258335548807 18.24890524370405 41 17.008630392238384 29.207477252843905 33.59692589855512 20.186966456362587 42 17.818615366056758 30.032101920376462 32.04113636816136 20.10814634540542 43 18.157787790026973 29.21122501443474 32.510894860062095 20.120092335476194 44 17.334568533090977 30.851690533271338 32.21774963312928 19.59599130050841 45 16.870314566026774 31.973793777076114 32.11632583507741 19.0395658218197 46 18.409473404361222 31.08756527839427 32.33053383350335 18.172427483741156 47 17.67748871865202 30.74780726667549 33.321816774278176 18.252887240394312 48 18.115039884381552 29.392054511192338 33.67820547805627 18.814700126369836 49 17.79448915081578 29.604505746372578 33.960810125514875 18.640194977296762 50 16.617223541095964 30.471409849351694 33.78782750458808 19.123539104964262 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1438.0 1 2931.5 2 4425.0 3 13678.5 4 22932.0 5 15882.0 6 8832.0 7 9053.5 8 9275.0 9 9476.5 10 9678.0 11 9506.5 12 9335.0 13 9116.5 14 8898.0 15 8209.0 16 7520.0 17 7750.0 18 7980.0 19 7956.5 20 7933.0 21 8758.0 22 9583.0 23 11488.0 24 13393.0 25 16499.5 26 19606.0 27 21340.0 28 23074.0 29 26533.0 30 29992.0 31 34228.5 32 38465.0 33 44940.0 34 51415.0 35 51311.5 36 51208.0 37 51762.5 38 52317.0 39 52463.5 40 52610.0 41 54688.0 42 56766.0 43 55295.5 44 53825.0 45 51879.0 46 49933.0 47 47296.0 48 44659.0 49 40554.0 50 36449.0 51 33076.5 52 29704.0 53 27404.5 54 25105.0 55 23556.5 56 22008.0 57 21355.0 58 20702.0 59 20245.5 60 19789.0 61 18359.5 62 16930.0 63 14839.5 64 12749.0 65 10791.0 66 8833.0 67 7271.0 68 5709.0 69 4884.0 70 4059.0 71 3383.5 72 2708.0 73 2187.0 74 1666.0 75 1434.5 76 1203.0 77 888.0 78 573.0 79 438.5 80 304.0 81 209.5 82 115.0 83 104.0 84 93.0 85 58.0 86 23.0 87 24.0 88 25.0 89 13.5 90 2.0 91 2.0 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 853843.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.5450277592237 #Duplication Level Percentage of deduplicated Percentage of total 1 74.66460443287794 20.566386017350798 2 7.3459069057945445 4.046864192735676 3 3.3988307076170203 2.808626585706383 4 2.0666429282499834 2.2770294730819662 5 1.5884728539062185 2.187726442781004 6 1.2888104628374624 2.130019198514151 7 1.04559462529728 2.0160653085096083 8 0.9194608601850298 2.026125993385308 9 0.7344564224189967 1.8207560289124254 >10 5.997938949732451 31.444796523319614 >50 0.5935674239175445 11.45535041303381 >100 0.3527242387019671 15.123123321273294 >500 0.002135134616839995 0.4150975118866109 >1k 4.2702692336799887E-4 0.16091056850690955 >5k 0.0 0.0 >10k+ 4.2702692336799887E-4 1.5211224210024519 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12932 1.5145641528946188 No Hit GGCTCTGGGCTCCTCTACAAAAACAAAAGTTAAAAAAAAACACACAAAAA 1368 0.1602168080080296 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 867 0.10154091560158016 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.030216327826075754 0.0 2 0.0 0.0 0.0 0.10036974010444544 0.0 3 0.0 0.0 0.0 0.16419880469828763 0.0 4 0.0 0.0 0.0 0.2927938742836798 0.0 5 0.0 0.0 0.0 0.5614615333263844 0.0 6 0.0 0.0 0.0 0.9084808331274017 0.0 7 0.0 0.0 0.0 1.1276077686413075 0.0 8 0.0 0.0 0.0 1.6581502688433354 0.0 9 0.0 0.0 0.0 1.9033944179433455 0.0 10 0.0 0.0 0.0 2.272080464441355 0.0 11 0.0 0.0 0.0 2.618748411593232 0.0 12 0.0 0.0 0.0 2.9171639282631583 0.0 13 0.0 0.0 0.0 3.0313535392337934 0.0 14 1.1711754971347191E-4 0.0 0.0 3.0773807362711882 0.0 15 1.1711754971347191E-4 0.0 0.0 3.137462039274199 0.0 16 1.1711754971347191E-4 0.0 0.0 3.271678751245838 0.0 17 1.1711754971347191E-4 0.0 0.0 3.4194810989842397 0.0 18 1.1711754971347191E-4 0.0 0.0 3.6163557000525857 0.0 19 1.1711754971347191E-4 0.0 0.0 3.731248016321502 0.0 20 1.1711754971347191E-4 0.0 0.0 3.867572844187983 0.0 21 1.1711754971347191E-4 0.0 0.0 4.042780698559337 0.0 22 1.1711754971347191E-4 0.0 0.0 4.232511129095162 0.0 23 1.1711754971347191E-4 0.0 0.0 4.418610915589868 0.0 24 1.1711754971347191E-4 0.0 0.0 4.572737611012798 0.0 25 1.1711754971347191E-4 0.0 0.0 4.711990377622116 0.0 26 1.1711754971347191E-4 0.0 0.0 4.845504384295474 0.0 27 1.1711754971347191E-4 0.0 0.0 4.992252674086454 0.0 28 1.1711754971347191E-4 0.0 0.0 5.142982960567692 0.0 29 1.1711754971347191E-4 0.0 0.0 5.318893520237327 0.0 30 1.1711754971347191E-4 0.0 0.0 5.52747987627702 0.0 31 1.1711754971347191E-4 0.0 0.0 5.716390483964851 0.0 32 1.1711754971347191E-4 0.0 0.0 5.891364103236778 0.0 33 1.1711754971347191E-4 0.0 0.0 6.0687971910526874 0.0 34 1.1711754971347191E-4 0.0 0.0 6.259347444436506 0.0 35 1.1711754971347191E-4 0.0 0.0 6.486321255781215 0.0 36 1.1711754971347191E-4 0.0 0.0 6.681673328703286 0.0 37 1.1711754971347191E-4 0.0 0.0 6.881124515865329 0.0 38 1.1711754971347191E-4 0.0 0.0 7.104116330519779 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACAACGG 30 2.5269492E-6 44.0 2 TTTACGC 20 7.855343E-4 44.0 43 AGCCCGT 20 7.855343E-4 44.0 24 GTCGTTA 20 7.855343E-4 44.0 36 TTCGGTC 35 1.4454963E-7 44.0 29 CGTCGTT 20 7.855343E-4 44.0 35 ATGTTCG 35 1.4454963E-7 44.0 26 TTACACG 40 8.307325E-9 44.0 34 CGTTTTT 7285 0.0 41.85587 1 ATAGGGC 205 0.0 41.853657 4 CGGGTAT 145 0.0 40.965515 6 TCGTAAG 60 3.6379788E-12 40.333332 1 AACGGAT 50 1.3478711E-9 39.6 4 CGGATGG 50 1.3478711E-9 39.6 6 TATCCGG 45 2.3497705E-8 39.11111 2 CGTAAGG 130 0.0 38.92308 2 GTTCGGT 40 4.122885E-7 38.5 28 ATCGGGT 40 4.122885E-7 38.5 4 TAGTACG 40 4.122885E-7 38.5 1 TAGTGCG 35 7.2880084E-6 37.714287 1 >>END_MODULE