SRR1546172_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546172_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3764802
Sequences flagged as poor quality	0
Sequence length	50
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	51042	1.3557685105352153	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4651	0.12353903339405366	No Hit
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3934	0.10449420713227417	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTACGC	20	7.8587665E-4	44.000004	32
TCTACGA	20	7.8587665E-4	44.000004	25
CGTACGT	35	1.4472607E-7	44.0	42
GTCGGTA	50	2.7284841E-11	44.0	33
ATACCGG	180	0.0	41.555557	2
AATACGG	150	0.0	41.066666	2
CGTTTTT	29580	0.0	40.891144	1
CGAAATC	205	0.0	40.780487	24
CATTCGA	60	3.6379788E-12	40.333332	11
CATACCG	60	3.6379788E-12	40.333332	1
CGGTATG	115	0.0	40.173916	6
ACGGGAT	1245	0.0	40.11245	5
TATACGG	395	0.0	40.101265	2
CTCGCTA	55	7.8216544E-11	40.0	26
TGCGAAG	425	0.0	39.34118	1
TACGGGA	1505	0.0	39.17608	4
TATCTCG	45	2.3534085E-8	39.11111	43
TCACGAC	215	0.0	38.883724	25
ATTCGAC	85	0.0	38.823532	10
GCTACGA	250	0.0	38.72	10