##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546172_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3764802 Sequences flagged as poor quality 0 Sequence length 50 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.80858541830354 31.0 31.0 34.0 30.0 34.0 2 32.2168533697124 33.0 31.0 34.0 30.0 34.0 3 32.28561448915507 34.0 31.0 34.0 30.0 34.0 4 35.948907273211184 37.0 35.0 37.0 35.0 37.0 5 35.864106797648326 37.0 35.0 37.0 35.0 37.0 6 35.935251574983226 37.0 35.0 37.0 35.0 37.0 7 36.15239473417194 37.0 35.0 37.0 35.0 37.0 8 36.0363108073147 37.0 35.0 37.0 35.0 37.0 9 37.7270329223157 39.0 38.0 39.0 35.0 39.0 10 37.42659056173472 39.0 37.0 39.0 34.0 39.0 11 37.349061916137956 39.0 37.0 39.0 34.0 39.0 12 37.060445941114565 39.0 37.0 39.0 33.0 39.0 13 36.94878376073961 39.0 37.0 39.0 33.0 39.0 14 38.117748024995734 40.0 37.0 41.0 33.0 41.0 15 38.25908347902492 40.0 37.0 41.0 33.0 41.0 16 38.308305722319524 40.0 37.0 41.0 34.0 41.0 17 38.243175338304646 40.0 37.0 41.0 34.0 41.0 18 38.10216818839344 40.0 37.0 41.0 34.0 41.0 19 37.95597006163936 40.0 36.0 41.0 34.0 41.0 20 37.7625699837601 40.0 35.0 41.0 34.0 41.0 21 37.664726325581 40.0 35.0 41.0 33.0 41.0 22 37.59868593354976 39.0 35.0 41.0 33.0 41.0 23 37.528179702411975 39.0 35.0 41.0 33.0 41.0 24 37.47125346830989 39.0 35.0 41.0 33.0 41.0 25 37.43826474805315 39.0 35.0 41.0 33.0 41.0 26 37.40656055750077 39.0 35.0 41.0 33.0 41.0 27 37.34279810731082 39.0 35.0 41.0 33.0 41.0 28 37.25228259016012 39.0 35.0 41.0 33.0 41.0 29 37.177151945839384 39.0 35.0 41.0 33.0 41.0 30 37.02023054598887 39.0 35.0 41.0 32.0 41.0 31 36.8324769801971 39.0 35.0 41.0 31.0 41.0 32 36.603587652152754 39.0 35.0 41.0 31.0 41.0 33 36.30882952144628 39.0 35.0 41.0 30.0 41.0 34 35.98991819490109 39.0 35.0 41.0 28.0 41.0 35 35.774559724522035 39.0 35.0 41.0 26.0 41.0 36 35.6522327070587 39.0 35.0 41.0 25.0 41.0 37 35.56177589153427 39.0 35.0 41.0 24.0 41.0 38 35.49466479246452 39.0 35.0 41.0 24.0 41.0 39 35.41610767312597 39.0 35.0 41.0 24.0 41.0 40 35.323471991355724 39.0 35.0 41.0 23.0 41.0 41 35.24637710030966 39.0 35.0 41.0 23.0 41.0 42 35.17774666503046 39.0 35.0 41.0 23.0 41.0 43 35.097670475100685 39.0 35.0 41.0 23.0 41.0 44 34.982892858641705 39.0 35.0 41.0 22.0 41.0 45 34.93312503552644 38.0 35.0 40.0 23.0 41.0 46 34.89022556830346 38.0 34.0 40.0 23.0 41.0 47 34.834096985711334 38.0 34.0 40.0 23.0 41.0 48 34.76431695478275 38.0 34.0 40.0 22.0 41.0 49 34.666836927944686 38.0 34.0 40.0 22.0 41.0 50 34.51533945211461 38.0 34.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 9.0 10 13.0 11 9.0 12 4.0 13 18.0 14 47.0 15 65.0 16 179.0 17 461.0 18 1088.0 19 2264.0 20 4088.0 21 6832.0 22 10901.0 23 16525.0 24 25529.0 25 41689.0 26 65287.0 27 82099.0 28 82370.0 29 76609.0 30 76382.0 31 83935.0 32 100443.0 33 127887.0 34 211669.0 35 345473.0 36 234758.0 37 301514.0 38 532648.0 39 1334006.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.956714855123856 23.868453108556572 29.350547518833658 16.824284517485914 2 35.25316869253682 23.337960402698467 30.18660742317923 11.222263481585486 3 27.001765298679718 23.08769491728914 37.597036975649715 12.313502808381424 4 24.459373959108607 26.226478842712048 36.789796648004334 12.524350550175015 5 21.223161271163796 29.64145259166352 36.086413043766974 13.048973093405708 6 20.0599925308157 38.04040690586118 33.25346193504997 8.646138628273146 7 78.38614089134037 4.802430512945966 14.676309670468726 2.1351189252449396 8 78.12174451671031 4.762401847427833 14.4423531436713 2.6735004921905587 9 71.6266087831445 7.550038488079851 16.85528216357726 3.9680705651983823 10 31.902262057871834 33.82610825217369 24.14219924447554 10.129430445478938 11 28.0579695824641 24.32608673709799 34.06184442103463 13.554099259403282 12 25.65473562753101 23.51472932706687 36.37073078477965 14.459804260622471 13 18.55752307823891 29.813015398950593 37.11828669874272 14.511174824067774 14 14.851006772733333 30.252852606856884 38.2297661337834 16.66637448662639 15 13.816662868326143 27.116220189003297 44.35667533113295 14.710441611537606 16 16.086662724892307 25.576803242242224 41.317206057582844 17.019327975282632 17 16.573487795639718 26.00088928979532 36.57278656354305 20.852836351021914 18 17.366092559449342 26.620390660650944 39.72721540203177 16.286301377867947 19 19.187224188682432 27.23303908147095 36.16163612322773 17.418100606618886 20 20.012181251497424 26.675931430125676 37.513871911457755 15.798015406919141 21 18.45565849146914 27.5254050545022 38.105270874802976 15.91366557922568 22 19.076434829773252 25.438920825052687 36.49798847323179 18.986655871942272 23 16.634420614948674 27.751924271183455 36.75678030345288 18.856874810414997 24 15.603237567340859 26.227700686516847 42.413412445063514 15.755649301078781 25 15.555745029884704 29.279893072729983 38.2780820877167 16.886279809668608 26 15.439908924825263 30.82467550750345 35.83203047597191 17.903385091699377 27 15.215328721138588 30.697311571763937 37.21555609033357 16.87180361676391 28 14.235888102481884 29.189078203847107 39.36709022147779 17.207943472193225 29 14.860808084993579 26.964180320771185 38.4330437563516 19.74196783788364 30 16.792516578561102 30.040650212149274 36.52045977451138 16.646373434778244 31 18.024374190196458 30.931241536739517 34.993553445838586 16.050830827225443 32 18.100872237105698 29.068593779965056 35.08598858585392 17.74454539707533 33 18.588733218905006 29.666712884236674 34.28573401735337 17.458819879504954 34 15.874858757512348 28.85551484513661 36.376043149148344 18.893583248202695 35 18.06166698806471 28.652795020827128 34.74472229880881 18.540815692299358 36 20.026923062620558 30.386246076154865 33.468240826476396 16.118590034748177 37 17.136226553215813 32.58301498989854 34.03703567943281 16.243722777452838 38 16.32269107379352 31.396418722684487 35.26578555791248 17.015104645609515 39 16.723269909015134 30.69805530277555 34.97886475835914 17.599810029850175 40 17.83809613360809 29.703872872995714 34.317634765387396 18.140396228008804 41 15.677026308422063 29.911772252564678 34.550927246638736 19.860274192374526 42 17.130303266944715 28.742919282342072 33.72987477163474 20.396902679078472 43 17.46939148459866 29.433261032054276 33.90704212333079 19.19030536001628 44 16.36375565036355 30.826402025923276 32.895966374858496 19.91387594885468 45 16.020603473967554 33.00330269692802 31.519957756078544 19.456136073025885 46 17.96734595869849 31.57860625870896 32.86959048576791 17.58445729682464 47 16.92888497190556 31.341913864261656 34.107265136386985 17.621936027445802 48 17.687676536508427 28.166899613844233 35.79242679960327 18.352997050044063 49 17.944741848309686 29.30180657575086 34.48959600000212 18.263855575937328 50 16.246830510608525 30.810757112857463 34.6099741765968 18.332438199937208 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 8234.0 1 15301.5 2 22369.0 3 56053.5 4 89738.0 5 63388.0 6 37038.0 7 37565.5 8 38093.0 9 39024.5 10 39956.0 11 38502.0 12 37048.0 13 35246.0 14 33444.0 15 32541.5 16 31639.0 17 32821.5 18 34004.0 19 33244.0 20 32484.0 21 40004.5 22 47525.0 23 55416.0 24 63307.0 25 77460.5 26 91614.0 27 105417.0 28 119220.0 29 136536.5 30 153853.0 31 185000.0 32 216147.0 33 224653.5 34 233160.0 35 243903.0 36 254646.0 37 257390.0 38 260134.0 39 260134.0 40 260134.0 41 264549.0 42 268964.0 43 253645.5 44 238327.0 45 229491.0 46 220655.0 47 214366.0 48 208077.0 49 195235.5 50 182394.0 51 152681.0 52 122968.0 53 107318.5 54 91669.0 55 81971.0 56 72273.0 57 65537.0 58 58801.0 59 55262.5 60 51724.0 61 48205.5 62 44687.0 63 39295.0 64 33903.0 65 28482.0 66 23061.0 67 19763.5 68 16466.0 69 14140.5 70 11815.0 71 9273.0 72 6731.0 73 5222.5 74 3714.0 75 3098.0 76 2482.0 77 1867.0 78 1252.0 79 919.5 80 587.0 81 429.5 82 272.0 83 182.5 84 93.0 85 74.5 86 56.0 87 36.0 88 16.0 89 17.5 90 19.0 91 12.0 92 5.0 93 2.5 94 0.0 95 0.0 96 0.0 97 1.5 98 3.0 99 2.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 3764802.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.9627965412769 #Duplication Level Percentage of deduplicated Percentage of total 1 76.47309226239796 14.501436894541495 2 9.370239943680055 3.553719071899016 3 3.5814645141049337 2.0374374870232503 4 1.9071848970078416 1.4466223667422335 5 1.1839188700824108 1.12252063273756 6 0.843405358039991 0.9595994523801089 7 0.6048533537627145 0.8028797759297938 8 0.46471963087716517 0.704990704724879 9 0.3641215913683218 0.621428728806311 >10 3.6968397226114558 15.61265074972563 >50 0.755857214657476 9.92608636237606 >100 0.6114747577473434 24.99627971328782 >500 0.11431904094520778 15.047335857565871 >1k 0.028367007678711607 7.294192197394876 >5k 0.0 0.0 >10k+ 1.4183503839355804E-4 1.372820004865134 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 51042 1.3557685105352153 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 4651 0.12353903339405366 No Hit TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3934 0.10449420713227417 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.06728109472955018 0.0 2 0.0 0.0 0.0 0.26290891260682503 0.0 3 0.0 0.0 0.0 0.38456205664999116 0.0 4 0.0 0.0 0.0 0.5993409480764195 0.0 5 0.0 0.0 0.0 1.0865644461514843 0.0 6 0.0 0.0 0.0 1.530678107374571 0.0 7 0.0 0.0 0.0 1.8208925728364997 0.0 8 0.0 0.0 0.0 2.45285143813672 0.0 9 0.0 0.0 0.0 2.6902078781301113 0.0 10 0.0 0.0 0.0 3.1300185242145537 0.0 11 0.0 0.0 0.0 3.645689733483992 0.0 12 0.0 0.0 0.0 4.0670399133872115 0.0 13 0.0 0.0 0.0 4.229545139425659 0.0 14 0.0 0.0 0.0 4.289707665901155 0.0 15 0.0 0.0 0.0 4.3963533806027515 0.0 16 0.0 0.0 0.0 4.6310005147681075 0.0 17 0.0 0.0 0.0 4.906260674532153 0.0 18 0.0 0.0 0.0 5.264181223873128 0.0 19 0.0 0.0 0.0 5.456887241347619 0.0 20 0.0 0.0 0.0 5.6840970653967995 0.0 21 0.0 0.0 0.0 5.987167452630975 0.0 22 0.0 0.0 0.0 6.306626483942582 0.0 23 0.0 0.0 0.0 6.642181979291341 0.0 24 0.0 0.0 0.0 6.907986130479106 0.0 25 0.0 0.0 0.0 7.149725271076673 0.0 26 0.0 0.0 0.0 7.39451902118624 0.0 27 0.0 0.0 0.0 7.644173584693166 0.0 28 0.0 0.0 0.0 7.90166388564392 0.0 29 0.0 0.0 0.0 8.197881322842477 0.0 30 2.656182184348606E-5 0.0 0.0 8.543424063204386 0.0 31 2.656182184348606E-5 0.0 0.0 8.865937704027994 0.0 32 2.656182184348606E-5 0.0 0.0 9.164572267014307 0.0 33 2.656182184348606E-5 0.0 0.0 9.447933782440616 0.0 34 2.656182184348606E-5 0.0 0.0 9.774192640144156 0.0 35 2.656182184348606E-5 0.0 0.0 10.143216031015708 0.0 36 2.656182184348606E-5 0.0 0.0 10.447800442094962 0.0 37 2.656182184348606E-5 0.0 0.0 10.763886122032448 0.0 38 2.656182184348606E-5 0.0 0.0 11.095218287708091 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATTACGC 20 7.8587665E-4 44.000004 32 TCTACGA 20 7.8587665E-4 44.000004 25 CGTACGT 35 1.4472607E-7 44.0 42 GTCGGTA 50 2.7284841E-11 44.0 33 ATACCGG 180 0.0 41.555557 2 AATACGG 150 0.0 41.066666 2 CGTTTTT 29580 0.0 40.891144 1 CGAAATC 205 0.0 40.780487 24 CATTCGA 60 3.6379788E-12 40.333332 11 CATACCG 60 3.6379788E-12 40.333332 1 CGGTATG 115 0.0 40.173916 6 ACGGGAT 1245 0.0 40.11245 5 TATACGG 395 0.0 40.101265 2 CTCGCTA 55 7.8216544E-11 40.0 26 TGCGAAG 425 0.0 39.34118 1 TACGGGA 1505 0.0 39.17608 4 TATCTCG 45 2.3534085E-8 39.11111 43 TCACGAC 215 0.0 38.883724 25 ATTCGAC 85 0.0 38.823532 10 GCTACGA 250 0.0 38.72 10 >>END_MODULE