SRR1546171_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546171_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3272612
Sequences flagged as poor quality	0
Sequence length	50
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	51673	1.578952836449906	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCC	8888	0.2715873436875499	No Hit
GAATCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTT	6715	0.205187782725236	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATG	4197	0.128246183782251	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAGACG	80	0.0	44.0	1
TAACGCG	40	8.3200575E-9	44.0	1
CGTTTTT	29330	0.0	42.379818	1
TATCGAT	80	0.0	41.25	11
GCGTAAG	160	0.0	41.25	1
CGCACTA	130	0.0	40.615383	43
CCCTACA	1450	0.0	40.206898	27
TACACCG	55	7.8216544E-11	40.0	19
CGACGGT	180	0.0	39.11111	28
AGGGCGA	1515	0.0	39.062706	6
AACGGGA	1315	0.0	38.98099	4
TAACGGG	705	0.0	38.695034	3
AAGGGCG	645	0.0	38.542637	5
ATCGTAC	80	0.0	38.5	44
GCCCTAC	1440	0.0	38.5	26
ACGGGAC	700	0.0	38.342857	5
TCGACCA	115	0.0	38.260868	35
CGGTCTA	185	0.0	38.054054	31
GGACTAA	2335	0.0	37.970024	8
GGGACTA	2795	0.0	37.93918	7