##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546171_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3272612 Sequences flagged as poor quality 0 Sequence length 50 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.84465833407688 31.0 31.0 34.0 30.0 34.0 2 32.21038393796759 33.0 31.0 34.0 30.0 34.0 3 32.1495175718967 33.0 31.0 34.0 30.0 34.0 4 35.89884929835862 37.0 35.0 37.0 35.0 37.0 5 35.88366326347273 37.0 35.0 37.0 35.0 37.0 6 35.92707018124972 37.0 35.0 37.0 35.0 37.0 7 36.12549578135141 37.0 35.0 37.0 35.0 37.0 8 35.98335274698009 37.0 35.0 37.0 35.0 37.0 9 37.67147801205887 39.0 38.0 39.0 35.0 39.0 10 37.38483480473701 39.0 37.0 39.0 34.0 39.0 11 37.31014064606498 39.0 37.0 39.0 34.0 39.0 12 37.09840457713899 39.0 37.0 39.0 33.0 39.0 13 36.99561634559795 39.0 37.0 39.0 33.0 39.0 14 38.21856975406801 40.0 37.0 41.0 33.0 41.0 15 38.30906016356354 40.0 37.0 41.0 33.0 41.0 16 38.36581085689352 40.0 37.0 41.0 34.0 41.0 17 38.23579208289892 40.0 37.0 41.0 34.0 41.0 18 38.06126635238152 39.0 37.0 41.0 34.0 41.0 19 37.884981476569784 39.0 36.0 41.0 34.0 41.0 20 37.64418513407639 39.0 35.0 41.0 33.0 41.0 21 37.57083699503638 39.0 35.0 41.0 33.0 41.0 22 37.47760626679851 39.0 35.0 41.0 33.0 41.0 23 37.40713595134407 39.0 35.0 41.0 33.0 41.0 24 37.33570371311967 39.0 35.0 41.0 33.0 41.0 25 37.33936103638317 39.0 35.0 41.0 33.0 41.0 26 37.280021279638405 39.0 35.0 41.0 33.0 41.0 27 37.20785873791333 39.0 35.0 41.0 33.0 41.0 28 37.12413784463297 39.0 35.0 41.0 33.0 41.0 29 37.03088572675282 39.0 35.0 41.0 32.0 41.0 30 36.86774875848405 39.0 35.0 41.0 32.0 41.0 31 36.663286695764725 39.0 35.0 41.0 31.0 41.0 32 36.369481930641335 39.0 35.0 41.0 30.0 41.0 33 36.03096945192403 39.0 35.0 41.0 29.0 41.0 34 35.59142055336838 39.0 35.0 41.0 25.0 41.0 35 35.356403386652616 39.0 35.0 41.0 23.0 41.0 36 35.233132739230925 39.0 35.0 41.0 23.0 41.0 37 35.18421982196484 39.0 35.0 41.0 23.0 41.0 38 35.09335814939259 39.0 35.0 41.0 22.0 41.0 39 34.971483328912804 39.0 35.0 41.0 21.0 41.0 40 34.83754536131995 39.0 35.0 41.0 21.0 41.0 41 34.722255494999104 38.0 34.0 41.0 20.0 41.0 42 34.670720818722174 38.0 34.0 41.0 19.0 41.0 43 34.53784561078429 38.0 34.0 41.0 18.0 41.0 44 34.40847647078236 38.0 34.0 40.0 18.0 41.0 45 34.38777068592305 38.0 34.0 40.0 18.0 41.0 46 34.30855170120992 38.0 34.0 40.0 18.0 41.0 47 34.24978671470984 38.0 34.0 40.0 18.0 41.0 48 34.17119414094919 38.0 34.0 40.0 18.0 41.0 49 34.10988256475256 38.0 34.0 40.0 18.0 41.0 50 33.97314102618948 38.0 34.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 7.0 10 7.0 11 14.0 12 20.0 13 22.0 14 43.0 15 86.0 16 202.0 17 464.0 18 1109.0 19 2309.0 20 4364.0 21 7294.0 22 11534.0 23 17779.0 24 26887.0 25 42893.0 26 65938.0 27 81194.0 28 78968.0 29 71255.0 30 69907.0 31 75035.0 32 87549.0 33 112155.0 34 181041.0 35 301257.0 36 204536.0 37 258955.0 38 454569.0 39 1115217.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.52909296916347 22.218399248062404 26.39756866991871 18.85493911285542 2 35.811058567285095 24.650004339041722 27.88680723532151 11.652129858351676 3 26.38821834057933 24.710170347111116 36.84824232142399 12.053368990885568 4 23.164829805672042 25.65391192111989 38.491333528080936 12.689924745127135 5 21.911518994613477 28.488803438965572 36.51844459410404 13.081232972316915 6 19.750615104998698 37.81080678063883 33.657763278995496 8.780814835366979 7 75.15486101010447 5.351169035620477 16.94686079498578 2.547109159289277 8 74.72725150430298 5.880134889195541 16.40121102043261 2.991402586068865 9 68.15711731179866 7.860999104079555 19.127993174870713 4.853890409251081 10 31.86140000708914 30.673235935087934 26.198889449772842 11.266474608050084 11 27.280196980271416 24.501713004780278 35.163166302635325 13.054923712312977 12 25.31708616847949 23.35247808172799 36.1341643922347 15.196271357557817 13 18.896740585196167 28.675473902803024 37.02666249466787 15.401123017332944 14 14.405679622271139 31.728417545373546 37.745812824740604 16.120090007614714 15 13.899172893089679 25.849443808187466 45.5467987039099 14.70458459481295 16 16.241827628817592 25.423728813559322 41.90991782710569 16.4245257305174 17 15.723556596382341 25.341959266787505 38.15524113460441 20.779243002225744 18 17.571316123023443 26.236412993657666 39.51611128969765 16.676159593621243 19 19.790766519220732 26.104225004369596 37.0395573932993 17.06545108311037 20 20.83888954755406 25.459021723320703 38.02934781147292 15.672740917652323 21 18.01209553714281 27.621300661367737 38.7192248882544 15.647378913235055 22 18.120021560759415 25.605418546408803 36.6266456274071 19.64791426542468 23 16.70647177239465 27.360713705138277 37.745232248735874 18.1875822737312 24 14.99138914115086 26.44795655580313 42.735771915521916 15.824882387524095 25 15.63038942593867 28.93942208853356 38.69630741438338 16.733881071144392 26 15.797442532142522 29.71552998033375 36.742210808980715 17.74481667854301 27 15.66513231632714 30.62718709092309 36.92927850903193 16.77840208371784 28 14.478923868762934 28.77545520214434 40.13020791954561 16.615413009547115 29 15.173537223477759 26.250591270825872 40.14887802159254 18.42699348410383 30 16.24992513625202 30.332865613155484 36.70474837835955 16.712460872232946 31 18.458955720995952 29.477860497975318 34.75104900917066 17.312134771858076 32 19.16658620086952 27.973618626344948 36.02773564357767 16.832059529207864 33 19.343172976203718 27.88289598644752 34.99449369494459 17.779437342404172 34 16.17249463119979 28.112651301162494 35.622463035642475 20.092391031995238 35 17.392407043670318 27.41006266554055 36.07078993782336 19.126740352965765 36 19.828595629423837 29.98843125918991 32.93457947352146 17.2483936378648 37 16.67557901761651 31.010764490260378 34.8036369725467 17.51001951957641 38 16.68022362565437 30.80340718667535 34.37462186168113 18.14174732598915 39 17.545801335447038 29.86803812978746 34.13169663864827 18.45446389611723 40 17.967941204151302 28.484556067141476 34.34324020079374 19.20426252791348 41 15.916277273321738 29.427228159036268 33.19519698638274 21.46129758125925 42 17.96127985841279 29.087346743213065 32.266336492074224 20.68503690629992 43 17.994678257000828 29.41824450927883 33.115505290575236 19.471571943145108 44 16.364665288766282 30.432571902810356 33.380125722205996 19.82263708621737 45 16.49718940100446 31.714086485046195 32.32253013800597 19.466193975943373 46 18.633709098420468 31.48674514424564 31.879611759658644 17.999933997675253 47 16.713072004869506 30.114355138953226 34.6132080429944 18.559364813182864 48 16.968005984210777 29.589208864356664 34.19024314523078 19.25254200620177 49 17.460303879592203 28.523546329354044 34.66445151457001 19.351698276483738 50 16.0375565450472 30.248712649101083 34.157883672124896 19.55584713372682 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 5362.0 1 10554.0 2 15746.0 3 52709.0 4 89672.0 5 63655.0 6 37638.0 7 38331.0 8 39024.0 9 39604.0 10 40184.0 11 39357.5 12 38531.0 13 36736.5 14 34942.0 15 33482.5 16 32023.0 17 32802.5 18 33582.0 19 32382.5 20 31183.0 21 36415.5 22 41648.0 23 46207.5 24 50767.0 25 61567.5 26 72368.0 27 80933.0 28 89498.0 29 115187.0 30 140876.0 31 153561.5 32 166247.0 33 180487.0 34 194727.0 35 198654.0 36 202581.0 37 203421.5 38 204262.0 39 210515.0 40 216768.0 41 216959.0 42 217150.0 43 208879.5 44 200609.0 45 186141.5 46 171674.0 47 176597.5 48 181521.0 49 172159.0 50 162797.0 51 148057.0 52 133317.0 53 114446.0 54 95575.0 55 82369.0 56 69163.0 57 64822.0 58 60481.0 59 57395.0 60 54309.0 61 49756.0 62 45203.0 63 39843.5 64 34484.0 65 28981.5 66 23479.0 67 19389.0 68 15299.0 69 13575.5 70 11852.0 71 9837.5 72 7823.0 73 6435.5 74 5048.0 75 3872.0 76 2696.0 77 1971.5 78 1247.0 79 937.0 80 627.0 81 469.0 82 311.0 83 234.0 84 157.0 85 105.0 86 53.0 87 43.5 88 34.0 89 29.5 90 25.0 91 34.0 92 43.0 93 24.0 94 5.0 95 3.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 3272612.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.31232796096517 #Duplication Level Percentage of deduplicated Percentage of total 1 78.53057928327195 15.95138881366397 2 8.390881778827103 3.4087668514644585 3 3.040301188654552 1.852667845321905 4 1.6190368449615051 1.3154562950297763 5 1.012499069706549 1.0283106582025778 6 0.7283427549174437 0.8876602143525597 7 0.5309703523647964 0.7549670754348089 8 0.4220357523745657 0.6858022890787893 9 0.35686332974005225 0.6523852491829798 >10 3.8566608306865033 18.36135837946754 >50 0.8120056893843476 11.290497789658636 >100 0.5983918968247687 25.827065545495675 >500 0.0846783227131614 11.570465192474174 >1k 0.01629600814803646 4.33199102798985 >5k 3.0459828314086834E-4 0.4826866239366838 >10k+ 1.5229914157043417E-4 1.5985301492456745 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 51673 1.578952836449906 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCC 8888 0.2715873436875499 No Hit GAATCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTT 6715 0.205187782725236 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATG 4197 0.128246183782251 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.054971380658629866 0.0 2 0.0 0.0 0.0 0.23326932737519754 0.0 3 0.0 0.0 0.0 0.3377424515952395 0.0 4 0.0 0.0 0.0 0.5716840248706537 0.0 5 0.0 0.0 0.0 1.180799923730647 0.0 6 0.0 0.0 0.0 1.5802056583548554 0.0 7 0.0 0.0 0.0 1.8773077896188122 0.0 8 0.0 0.0 0.0 2.4945823091768897 0.0 9 0.0 0.0 0.0 2.717309598571416 0.0 10 0.0 0.0 0.0 3.3730243609691586 0.0 11 0.0 0.0 0.0 3.771696736429494 0.0 12 0.0 0.0 0.0 4.247371824096471 0.0 13 0.0 0.0 0.0 4.395693714989739 0.0 14 0.0 0.0 0.0 4.456440299063867 0.0 15 3.0556631828032165E-5 0.0 0.0 4.5764667488843775 0.0 16 3.0556631828032165E-5 0.0 0.0 4.770562474256038 0.0 17 3.0556631828032165E-5 0.0 0.0 4.98341997157011 0.0 18 3.0556631828032165E-5 0.0 0.0 5.273921870359212 0.0 19 6.111326365606433E-5 0.0 0.0 5.458667266391494 0.0 20 6.111326365606433E-5 0.0 0.0 5.633603983606978 0.0 21 6.111326365606433E-5 0.0 0.0 5.867301103827768 0.0 22 6.111326365606433E-5 0.0 0.0 6.12364068823313 0.0 23 6.111326365606433E-5 0.0 0.0 6.389452828505182 0.0 24 6.111326365606433E-5 0.0 0.0 6.599224106004622 0.0 25 6.111326365606433E-5 0.0 0.0 6.787116835115192 0.0 26 6.111326365606433E-5 0.0 0.0 6.987996132752676 0.0 27 6.111326365606433E-5 0.0 0.0 7.186614239634885 0.0 28 6.111326365606433E-5 0.0 0.0 7.38297115576182 0.0 29 6.111326365606433E-5 0.0 0.0 7.609701363925819 0.0 30 6.111326365606433E-5 0.0 0.0 7.885963872283057 0.0 31 9.16698954840965E-5 0.0 0.0 8.146123035666923 0.0 32 9.16698954840965E-5 0.0 0.0 8.385992595516976 0.0 33 9.16698954840965E-5 0.0 0.0 8.614464531695171 0.0 34 1.2222652731212866E-4 0.0 0.0 8.867198433544827 0.0 35 1.2222652731212866E-4 0.0 0.0 9.154766895678437 0.0 36 1.2222652731212866E-4 0.0 0.0 9.39943384672549 0.0 37 1.5278315914016082E-4 0.0 0.0 9.640006209107588 0.0 38 1.5278315914016082E-4 0.0 0.0 9.886048208586903 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTAGACG 80 0.0 44.0 1 TAACGCG 40 8.3200575E-9 44.0 1 CGTTTTT 29330 0.0 42.379818 1 TATCGAT 80 0.0 41.25 11 GCGTAAG 160 0.0 41.25 1 CGCACTA 130 0.0 40.615383 43 CCCTACA 1450 0.0 40.206898 27 TACACCG 55 7.8216544E-11 40.0 19 CGACGGT 180 0.0 39.11111 28 AGGGCGA 1515 0.0 39.062706 6 AACGGGA 1315 0.0 38.98099 4 TAACGGG 705 0.0 38.695034 3 AAGGGCG 645 0.0 38.542637 5 ATCGTAC 80 0.0 38.5 44 GCCCTAC 1440 0.0 38.5 26 ACGGGAC 700 0.0 38.342857 5 TCGACCA 115 0.0 38.260868 35 CGGTCTA 185 0.0 38.054054 31 GGACTAA 2335 0.0 37.970024 8 GGGACTA 2795 0.0 37.93918 7 >>END_MODULE