SRR1546170_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1546170_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	3343110
Sequences flagged as poor quality	0
Sequence length	50
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	52820	1.5799659598397897	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCC	8706	0.2604161992874898	No Hit
GAATCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTT	6296	0.1883276350464089	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATG	4158	0.12437520751635454	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3437	0.10280846277867016	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGATC	25	4.4446693E-5	44.0	26
CGCCGAT	20	7.858642E-4	44.0	30
TATCGTG	25	4.4446693E-5	44.0	1
CGTTTTT	30275	0.0	42.299587	1
ATCGTAC	55	7.8216544E-11	40.0	44
GCGTAAG	160	0.0	39.875	1
CGCACTA	145	0.0	39.448277	43
CGGTCTA	235	0.0	39.319145	31
TGCGTTG	180	0.0	39.11111	1
CCCTACA	1435	0.0	38.787457	27
AACGTGC	205	0.0	38.634148	11
GGCGATT	860	0.0	38.627907	8
TAACGCG	40	4.127687E-7	38.5	1
CGCAATA	80	0.0	38.5	30
ACGGGAT	1460	0.0	38.424656	5
TAACGGG	665	0.0	38.37594	3
TTATCGT	75	0.0	38.13333	40
TACGGGA	1480	0.0	37.905403	4
AAGGGAT	4690	0.0	37.855015	5
AGGGCGA	1360	0.0	37.852943	6