##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546168_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1888999 Sequences flagged as poor quality 0 Sequence length 50 %GC 37 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.91094701479461 31.0 31.0 34.0 30.0 34.0 2 32.30154330415209 33.0 31.0 34.0 31.0 34.0 3 32.34198747590655 34.0 31.0 34.0 30.0 34.0 4 36.02337957828458 37.0 35.0 37.0 35.0 37.0 5 35.92592161245189 37.0 35.0 37.0 35.0 37.0 6 36.01000635786467 37.0 35.0 37.0 35.0 37.0 7 36.186984746947985 37.0 35.0 37.0 35.0 37.0 8 36.06521284553354 37.0 35.0 37.0 35.0 37.0 9 37.71576480453404 39.0 38.0 39.0 35.0 39.0 10 37.59464933544168 39.0 37.0 39.0 35.0 39.0 11 37.48201878349327 39.0 37.0 39.0 35.0 39.0 12 37.20944796688617 39.0 37.0 39.0 34.0 39.0 13 37.091701477872675 39.0 37.0 39.0 33.0 39.0 14 38.37063492357593 40.0 37.0 41.0 33.0 41.0 15 38.456164349478215 40.0 37.0 41.0 34.0 41.0 16 38.45510876395382 40.0 37.0 41.0 34.0 41.0 17 38.3886799304817 40.0 37.0 41.0 34.0 41.0 18 38.19605410061096 40.0 37.0 41.0 34.0 41.0 19 37.99584806556277 40.0 36.0 41.0 34.0 41.0 20 37.76590882260923 40.0 35.0 41.0 34.0 41.0 21 37.70113430446496 40.0 35.0 41.0 34.0 41.0 22 37.63114273750277 39.0 35.0 41.0 33.0 41.0 23 37.56562338042529 39.0 35.0 41.0 33.0 41.0 24 37.49531630244378 39.0 35.0 41.0 33.0 41.0 25 37.469155356884784 39.0 35.0 41.0 33.0 41.0 26 37.41093510372425 39.0 35.0 41.0 33.0 41.0 27 37.34765979230269 39.0 35.0 41.0 33.0 41.0 28 37.25467244821199 39.0 35.0 41.0 33.0 41.0 29 37.15281320953584 39.0 35.0 41.0 33.0 41.0 30 36.98532238503038 39.0 35.0 41.0 33.0 41.0 31 36.78020316580369 39.0 35.0 41.0 32.0 41.0 32 36.48825065550591 39.0 35.0 41.0 31.0 41.0 33 36.084319790534565 39.0 35.0 41.0 29.0 41.0 34 35.71693261881028 39.0 35.0 41.0 25.0 41.0 35 35.448922418699006 39.0 35.0 41.0 23.0 41.0 36 35.25860521895459 39.0 35.0 41.0 23.0 41.0 37 35.10666866419728 39.0 35.0 41.0 22.0 41.0 38 35.054199075806814 39.0 35.0 41.0 21.0 41.0 39 34.99598888088347 39.0 35.0 41.0 21.0 41.0 40 34.87073524125741 39.0 35.0 41.0 20.0 41.0 41 34.816797679617615 39.0 35.0 41.0 19.0 41.0 42 34.73984740066035 39.0 35.0 41.0 18.0 41.0 43 34.6542147454816 39.0 35.0 41.0 18.0 41.0 44 34.513742992981996 38.0 34.0 41.0 18.0 41.0 45 34.446759897702435 38.0 34.0 41.0 18.0 41.0 46 34.40211720599111 38.0 34.0 40.0 18.0 41.0 47 34.38972175210257 38.0 34.0 40.0 18.0 41.0 48 34.30067300194442 38.0 34.0 40.0 18.0 41.0 49 34.16659034758621 38.0 34.0 40.0 18.0 41.0 50 34.04560192991103 38.0 34.0 40.0 17.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 1.0 10 2.0 11 5.0 12 4.0 13 8.0 14 13.0 15 34.0 16 77.0 17 238.0 18 545.0 19 1176.0 20 2057.0 21 3458.0 22 5818.0 23 9156.0 24 14119.0 25 24497.0 26 38861.0 27 48452.0 28 46263.0 29 40287.0 30 38042.0 31 39754.0 32 47140.0 33 60515.0 34 102055.0 35 181931.0 36 112311.0 37 142522.0 38 251221.0 39 678435.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.21150302355904 24.551045289065794 27.364651860588594 18.87279982678657 2 35.63035237181174 27.673439742424428 26.904566916128598 9.79164096963524 3 27.63606545053756 24.796572152764508 37.19705515990215 10.370307236795783 4 26.367086483370294 26.4968377431645 36.26338605790686 10.872689715558346 5 21.932197952460537 31.04326683073946 35.7573508509004 11.267184365899611 6 19.149771916237118 40.4296137795732 32.45692559921948 7.963688704970198 7 75.81655681130587 6.999897829485352 15.477509516945217 1.706035842263548 8 75.94471992838535 7.079781408036744 15.10429597898146 1.8712026845964451 9 67.33508064324015 12.418164329361742 17.133624739875458 3.113130287522651 10 31.386305657123163 37.581226882597605 22.998953413950986 8.033514046328241 11 31.44750208973112 23.69853027979369 32.9754012574914 11.878566372983787 12 31.593505343306166 24.451839307485077 32.3373913908901 11.617263958318665 13 18.924361526925107 34.675190405076975 31.82754464136826 14.57290342662966 14 13.947810454108234 37.2540694833613 32.87958331370213 15.918536748828346 15 16.334894830542527 28.6157377531698 42.316380262774096 12.73298715351358 16 16.757129040301237 26.67492147957728 39.67604006142936 16.891909418692123 17 15.779838951741107 29.34008964536244 32.937074079975694 21.942997322920764 18 16.21292547005054 32.114469091831175 36.575244348991184 15.097361089127098 19 22.14993231865131 28.395356482454464 33.37958357839258 16.075127620501654 20 21.770419147919082 29.087627891809365 35.72834077731116 13.413612182960394 21 18.082963516656175 32.4317800062361 33.96740813520812 15.517848341899597 22 18.975499722339713 30.696945842745283 31.674130055124433 18.653424379790568 23 17.920655331209808 31.18567029416109 32.75205545370855 18.141618920920553 24 15.412554479912377 29.1209259507284 42.31124526799643 13.155274301362784 25 14.931929556341744 35.181913807259825 35.33156978907876 14.554586847319664 26 14.907419220444268 35.57010882483262 32.665131109121816 16.857340845601296 27 17.23579525452369 33.70097072576534 33.616163904798256 15.447070114912714 28 14.424888525615948 33.63733914099478 37.64798181470715 14.289790518682116 29 14.4830674870659 30.556289336309867 35.995889886654254 18.96475328996998 30 14.6579749380492 36.732788106293334 33.58207177452185 15.027165181135619 31 20.787147055133435 33.74898557384096 31.6383968440428 13.825470526982809 32 19.958401248491924 32.41616326954117 31.853484305709003 15.7719511762579 33 19.019914780261928 35.60510090264738 29.436278155785157 15.938706161305538 34 16.65728780163462 31.79980508195081 33.897529855759586 17.645377260654982 35 22.09921762796063 29.944219134049305 31.30996893063469 16.64659430735538 36 21.932886147636925 34.85735037445758 28.961846988802005 14.247916489103488 37 16.855435074343607 36.95687504334306 32.34670849481657 13.840981387496765 38 15.646434963703 35.6604212072108 33.40615849981921 15.286985329266983 39 19.78529369258533 32.21632197793646 32.579212588254414 15.419171741223792 40 18.198633244379696 33.28884769129047 32.17915943841156 16.333359625918277 41 15.422506840924743 33.68535398907041 32.56026075185852 18.33187841814633 42 16.69265044608282 33.58164826979792 29.800809846908336 19.924891437210928 43 19.969941752219032 31.61605696985546 30.343478212534787 18.070523065390717 44 17.598844679113117 34.6585678446627 29.054859213795243 18.687728262428937 45 15.940506056382242 39.57572237994832 27.261157893678078 17.222613669991354 46 17.796991951822104 38.25618753636185 29.12087301263791 14.825947499178135 47 19.592228476563513 32.16555434915529 31.754860643123685 16.487356531157506 48 18.004615142729033 31.60832800864373 33.291971038629455 17.09508580999778 49 17.404932453643436 34.510129438925055 31.51473346465509 16.570204642776414 50 16.22091912171473 34.970373197656535 31.353325226747074 17.45538245388166 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 4490.0 1 7814.5 2 11139.0 3 30774.0 4 50409.0 5 36662.0 6 22915.0 7 22964.5 8 23014.0 9 23574.0 10 24134.0 11 24385.5 12 24637.0 13 23123.0 14 21609.0 15 20331.0 16 19053.0 17 17223.5 18 15394.0 19 17916.0 20 20438.0 21 18308.5 22 16179.0 23 21279.5 24 26380.0 25 34131.0 26 41882.0 27 48426.5 28 54971.0 29 81845.0 30 108719.0 31 115867.0 32 123015.0 33 123873.0 34 124731.0 35 127172.0 36 129613.0 37 117507.0 38 105401.0 39 115021.5 40 124642.0 41 127690.0 42 130738.0 43 126692.0 44 122646.0 45 112366.5 46 102087.0 47 95366.0 48 88645.0 49 87645.5 50 86646.0 51 78870.0 52 71094.0 53 57590.0 54 44086.0 55 38118.5 56 32151.0 57 29836.0 58 27521.0 59 27482.5 60 27444.0 61 25115.5 62 22787.0 63 19277.0 64 15767.0 65 12437.5 66 9108.0 67 7322.0 68 5536.0 69 4624.5 70 3713.0 71 3269.5 72 2826.0 73 2285.0 74 1744.0 75 1321.5 76 899.0 77 605.0 78 311.0 79 268.5 80 226.0 81 192.5 82 159.0 83 104.5 84 50.0 85 44.5 86 39.0 87 21.5 88 4.0 89 3.5 90 3.0 91 2.5 92 2.0 93 1.5 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1888999.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.088368918742862 #Duplication Level Percentage of deduplicated Percentage of total 1 78.58456799595685 16.572203612187714 2 8.211366895030164 3.4632866881909634 3 3.013331253082736 1.9063872341815935 4 1.613187754463428 1.360779940052926 5 0.9900482935924931 1.043925183132517 6 0.7629819147652867 0.9654026458139512 7 0.5610828587643396 0.8282625623723703 8 0.4707083278545714 0.7941176696737414 9 0.4040064573277926 0.7667853495914553 >10 4.087888197664648 19.303964415854075 >50 0.664458500736759 9.636053963927308 >100 0.5473402368588728 24.724233179269767 >500 0.07410845162868793 10.17869346828842 >1k 0.013658212928154088 4.720055663889928 >5k 5.058597380797811E-4 0.7168199166819231 >10k+ 7.587896071196715E-4 3.0190285068914005 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 29980 1.5870839529295675 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 14631 0.7745372019784023 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 11990 0.6347277049908444 No Hit GAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA 6962 0.36855498600052194 No Hit AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 6477 0.34288001211223507 No Hit TAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 4829 0.2556380389825511 No Hit AGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 4123 0.21826374709568402 No Hit AGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 3302 0.17480157480231595 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2751 0.1456326869416024 No Hit GAAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA 2716 0.14377985377440644 No Hit AGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 2640 0.13975655889706665 No Hit GGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA 2600 0.1376390352774141 No Hit GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 2520 0.13340398803810907 No Hit GAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 2276 0.12048709395822868 No Hit GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA 2227 0.11789312752415433 No Hit TAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 2140 0.11328751365141009 No Hit AAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 2027 0.10730550942589169 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCA 1928 0.1020646384672517 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04875598134249939 0.0 2 0.0 0.0 0.0 0.20979365261707392 0.0 3 0.0 0.0 0.0 0.30598216303978987 0.0 4 0.0 0.0 0.0 0.46299653943702457 0.0 5 0.0 0.0 0.0 0.8055059849158205 0.0 6 0.0 0.0 0.0 1.1191641710768507 0.0 7 0.0 0.0 0.0 1.3076237732259255 0.0 8 0.0 0.0 0.0 1.7830607639284086 0.0 9 0.0 0.0 0.0 1.9877194217678251 0.0 10 0.0 0.0 0.0 2.393754575836197 0.0 11 0.0 0.0 0.0 2.8967193735941628 0.0 12 0.0 0.0 0.0 3.2750149682450864 0.0 13 0.0 0.0 0.0 3.4232945597112545 0.0 14 0.0 0.0 0.0 3.485073311314617 0.0 15 0.0 0.0 0.0 3.5752798175118143 0.0 16 0.0 0.0 0.0 3.7803090419846703 0.0 17 0.0 0.0 0.0 4.000584436519024 0.0 18 0.0 0.0 0.0 4.2823738922042835 0.0 19 0.0 0.0 0.0 4.435841416538601 0.0 20 0.0 0.0 0.0 4.604555110934416 0.0 21 0.0 0.0 0.0 4.8199602011435685 0.0 22 0.0 0.0 0.0 5.060140317702657 0.0 23 0.0 0.0 0.0 5.298467601094548 0.0 24 0.0 0.0 0.0 5.501643992400208 0.0 25 0.0 0.0 0.0 5.6874566900247165 0.0 26 0.0 0.0 0.0 5.8576526509542886 0.0 27 0.0 0.0 0.0 6.032454225756604 0.0 28 0.0 0.0 0.0 6.21127909543626 0.0 29 0.0 0.0 0.0 6.398679935775508 0.0 30 0.0 0.0 0.0 6.642671594849971 0.0 31 0.0 0.0 0.0 6.860564775312215 0.0 32 0.0 0.0 0.0 7.081369550751482 0.0 33 0.0 0.0 0.0 7.274328890592319 0.0 34 0.0 0.0 0.0 7.485710685924133 0.0 35 0.0 0.0 0.0 7.751618714461998 0.0 36 0.0 0.0 0.0 7.989098988406028 0.0 37 0.0 0.0 0.0 8.219591434405206 0.0 38 0.0 0.0 0.0 8.439125695672681 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGGCGT 65 0.0 44.000004 5 TAATACG 40 8.3182385E-9 44.0 1 TACCCGC 50 2.7284841E-11 44.0 30 CTCCGTA 20 7.85777E-4 44.0 17 ACGTTAG 35 1.4467514E-7 44.0 1 CGCATTA 20 7.85777E-4 44.0 21 GCACGAG 55 1.8189894E-12 44.0 1 CTAAGCG 50 2.7284841E-11 44.0 1 ACTTACC 30 2.5285863E-6 44.0 42 TAGCACG 20 7.85777E-4 44.0 1 AACGGAT 20 7.85777E-4 44.0 17 CTAACGG 30 2.5285863E-6 44.0 2 TATCTCG 20 7.85777E-4 44.0 1 TCGCTAA 35 1.4467514E-7 44.0 27 GTCGTAG 60 0.0 44.0 1 TTAACGA 30 2.5285863E-6 44.0 40 CGTAATC 50 2.7284841E-11 44.0 38 TATAGCG 110 0.0 44.0 1 GGACCGT 60 0.0 44.0 8 ATACGAC 25 4.443932E-5 44.0 24 >>END_MODULE