##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546167_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 7079983 Sequences flagged as poor quality 0 Sequence length 50 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.96150583977391 33.0 31.0 34.0 30.0 34.0 2 32.31151049373989 33.0 31.0 34.0 31.0 34.0 3 32.09154287517357 33.0 31.0 34.0 30.0 34.0 4 35.94669634093754 37.0 35.0 37.0 35.0 37.0 5 35.9812321583258 37.0 35.0 37.0 35.0 37.0 6 36.02927323413065 37.0 35.0 37.0 35.0 37.0 7 36.22024389041612 37.0 35.0 37.0 35.0 37.0 8 36.11898051167637 37.0 36.0 37.0 35.0 37.0 9 37.86692312679282 39.0 38.0 39.0 35.0 39.0 10 37.578799129884914 39.0 37.0 39.0 35.0 39.0 11 37.49449299525154 39.0 37.0 39.0 35.0 39.0 12 37.36372389594721 39.0 37.0 39.0 35.0 39.0 13 37.321308116135306 39.0 37.0 39.0 34.0 39.0 14 38.650921336958014 40.0 38.0 41.0 34.0 41.0 15 38.665350043919595 40.0 38.0 41.0 34.0 41.0 16 38.66725711064561 40.0 38.0 41.0 34.0 41.0 17 38.55498000489549 40.0 38.0 41.0 34.0 41.0 18 38.193424475736734 39.0 37.0 41.0 34.0 41.0 19 37.83049493197936 39.0 37.0 41.0 34.0 41.0 20 37.43807026090317 39.0 35.0 41.0 34.0 41.0 21 37.349382477330806 39.0 35.0 41.0 33.0 41.0 22 37.25851234388557 39.0 35.0 41.0 33.0 41.0 23 37.17286171449847 39.0 35.0 41.0 33.0 41.0 24 37.09712226710149 38.0 35.0 41.0 33.0 41.0 25 37.072735767868366 38.0 35.0 41.0 33.0 41.0 26 37.01259861782154 38.0 35.0 41.0 33.0 41.0 27 36.93800663080688 38.0 35.0 41.0 33.0 41.0 28 36.83069648613563 38.0 35.0 41.0 33.0 41.0 29 36.71481880676832 38.0 35.0 41.0 33.0 41.0 30 36.47769309615574 38.0 35.0 41.0 31.0 41.0 31 36.12780736902899 38.0 35.0 41.0 30.0 41.0 32 35.595160327362365 38.0 35.0 41.0 27.0 41.0 33 34.92496733396111 38.0 35.0 41.0 21.0 41.0 34 34.168420037166754 38.0 34.0 41.0 17.0 41.0 35 33.718103419174874 38.0 33.0 41.0 15.0 41.0 36 33.52349306488448 38.0 33.0 41.0 10.0 41.0 37 33.426723199759095 38.0 33.0 41.0 10.0 41.0 38 33.295137431827165 38.0 33.0 41.0 10.0 41.0 39 33.15919176642091 38.0 33.0 40.0 10.0 41.0 40 33.06153687092186 38.0 33.0 40.0 10.0 41.0 41 32.89040086678174 38.0 32.0 40.0 10.0 41.0 42 32.80798061238283 38.0 32.0 40.0 10.0 41.0 43 32.661577294747744 37.0 32.0 40.0 10.0 41.0 44 32.499336792192864 37.0 31.0 40.0 10.0 41.0 45 32.43166530202121 37.0 31.0 40.0 10.0 41.0 46 32.35239095913084 37.0 31.0 40.0 10.0 41.0 47 32.30371683095849 37.0 31.0 40.0 10.0 41.0 48 32.193817697019895 36.0 31.0 40.0 9.0 41.0 49 32.104171012840006 36.0 31.0 40.0 8.0 41.0 50 31.96894653560609 36.0 30.0 40.0 8.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 4.0 9 8.0 10 11.0 11 18.0 12 35.0 13 38.0 14 90.0 15 187.0 16 461.0 17 1231.0 18 2949.0 19 6196.0 20 11237.0 21 18156.0 22 28424.0 23 43757.0 24 71684.0 25 129000.0 26 221397.0 27 280161.0 28 260005.0 29 213249.0 30 182465.0 31 175683.0 32 187892.0 33 224371.0 34 356800.0 35 564112.0 36 467901.0 37 569282.0 38 998151.0 39 2065028.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.952906101610697 18.246103133298483 24.058122738430303 29.742868026660517 2 43.67242124733915 20.973087082271245 25.46155831165131 9.892933358738292 3 23.86110249134779 21.47010804969447 44.105473134610634 10.563316324347106 4 21.6830040411114 23.101114790812353 43.547957671649776 11.667923496426475 5 19.163746579617495 25.848353025706416 43.06797064343233 11.919929751243753 6 17.396171713971633 32.965065029110946 40.967160514368466 8.671602742548957 7 70.25279580473568 4.096690627646987 23.71872926813525 1.931784299482075 8 70.94084830429678 3.7502067448467034 23.461694752656893 1.8472501981996285 9 66.09538469230787 5.656087027327608 25.14756038256024 3.1009678978042743 10 29.784506544719104 27.096082010366406 31.583988266638492 11.535423178275993 11 24.008701715809206 22.68690475669221 39.58279278354199 13.72160074395659 12 22.79895304833359 20.30473801985118 42.43255951320787 14.46374941860736 13 18.440764617655155 22.959348913690896 42.95934043909428 15.640546029559676 14 15.851860096274242 24.8939863273683 43.08838029695834 16.16577327939912 15 15.764656497056562 22.39019500470552 46.86461817775551 14.980530320482407 16 17.861130457516637 21.10914673100204 45.01416175716806 16.015561054313267 17 17.700183743379043 21.56147832558355 42.11994576823137 18.618392162806042 18 18.63897130826444 22.196974201774214 42.88333743174242 16.280717058218926 19 20.14869244742537 23.424138165303503 39.741592599869236 16.68557678740189 20 21.770744364781667 21.726916575929632 41.031313210780304 15.471025848508393 21 19.93870606751457 22.998699290662138 41.42836218674537 15.634232455077928 22 19.997632762677537 21.437014749894175 40.52343063535604 18.041921852072242 23 18.2907501331571 23.22303598751579 41.25474595066118 17.231467928665932 24 17.82307951869376 21.72989680907426 44.43168860716191 16.015335065070072 25 18.20505783700328 23.425649468367368 41.71481767682211 16.654475017807247 26 17.318219549397224 24.738661095655175 40.66422193386622 17.27889742108138 27 16.918486951169236 24.36329296270909 40.9329513926799 17.78526869344178 28 16.080165729211497 23.88987374687199 42.91610587200562 17.113854651910888 29 17.83579141362345 22.22251098625519 42.16292609742142 17.778771502699936 30 18.089817447301783 24.852658544519105 40.7887278825387 16.268796125640414 31 19.81109276674817 24.576881046183303 39.16866749538806 16.443358691680473 32 20.894004971480864 23.694901527305927 38.10520448989779 17.305889011315422 33 20.41569873825968 25.099198684516615 37.07466529227542 17.410437284948284 34 18.84980514783722 24.937390386389346 37.94979451221846 18.263009953554974 35 19.66487772640132 25.952322201903595 36.529155507859265 17.853644563835815 36 20.352082766300427 28.196112900271086 34.07721459218193 17.374589741246556 37 19.840993968488345 28.69176380790745 34.53424958788743 16.932992635716783 38 19.364114292364825 28.66125526007619 34.16648034324376 17.808150104315224 39 19.815358313713467 28.563952766553253 33.28143584525556 18.33925307447772 40 20.65941401271726 27.10380801761812 33.95640921736677 18.28036875229785 41 18.36284070173615 27.86087198231973 33.374557537779395 20.40172977816472 42 19.122941396893182 27.904600900877867 32.18777502714343 20.78468267508552 43 19.335978631587107 27.728696523706343 33.18765030932984 19.747674535376706 44 19.58299899872641 28.106437543705965 32.34774716266974 19.962816294897884 45 19.078506261950064 29.011510338372283 31.96324058970198 19.946742809975675 46 19.626516052369052 29.053191229413972 32.75530463844334 18.564988079773638 47 19.322037920147547 28.105519462405486 33.603894246638724 18.968548370808236 48 19.176868080050475 26.46928672003874 34.590450287804366 19.763394912106428 49 19.087065604536054 26.748496430005552 34.36742715342678 19.79701081203161 50 18.795497107832038 27.541139576182598 34.30826034469292 19.355102971292446 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 8666.0 1 15498.5 2 22331.0 3 215062.0 4 407793.0 5 277163.5 6 146534.0 7 141840.5 8 137147.0 9 136883.0 10 136619.0 11 134747.0 12 132875.0 13 126402.0 14 119929.0 15 114739.0 16 109549.0 17 101263.5 18 92978.0 19 88501.5 20 84025.0 21 82037.5 22 80050.0 23 81763.0 24 83476.0 25 86914.5 26 90353.0 27 97077.5 28 103802.0 29 121407.0 30 139012.0 31 165379.0 32 191746.0 33 212932.5 34 234119.0 35 254129.0 36 274139.0 37 282720.0 38 291301.0 39 305540.0 40 319779.0 41 333793.0 42 347807.0 43 362921.0 44 378035.0 45 385775.0 46 393515.0 47 402651.0 48 411787.0 49 406328.5 50 400870.0 51 372109.5 52 343349.0 53 316070.0 54 288791.0 55 275491.0 56 262191.0 57 256702.5 58 251214.0 59 241506.5 60 231799.0 61 207882.0 62 183965.0 63 160664.0 64 137363.0 65 112094.0 66 86825.0 67 71087.0 68 55349.0 69 49460.5 70 43572.0 71 34731.5 72 25891.0 73 20253.5 74 14616.0 75 11422.0 76 8228.0 77 6227.0 78 4226.0 79 3253.5 80 2281.0 81 1664.0 82 1047.0 83 759.5 84 472.0 85 377.0 86 282.0 87 196.5 88 111.0 89 123.5 90 136.0 91 80.5 92 25.0 93 15.0 94 5.0 95 4.0 96 3.0 97 2.0 98 1.0 99 2.5 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 7079983.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.09585720737133 #Duplication Level Percentage of deduplicated Percentage of total 1 79.65173554187321 16.006699037687884 2 7.404757369327253 2.976098934984621 3 2.635847126714934 1.5890882243676998 4 1.3902960751799052 1.1175676561113668 5 0.9014925779176952 0.905813305966954 6 0.6635452309450689 0.8000706127022604 7 0.4969512726039761 0.699066326928968 8 0.4109723373890226 0.6607073126679547 9 0.36420871505492386 0.6587177698281549 >10 3.9709760386032813 18.28673238699976 >50 1.200144660577343 17.165263564168818 >100 0.8855782005810133 31.14905273484194 >500 0.019197014785659355 2.425565841565135 >1k 0.004011315883662574 1.722005697387002 >5k 2.1489192233906443E-4 0.2288483918936229 >10k+ 7.163064077968814E-5 3.608702201897836 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 250695 3.5408983326654884 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03025430993266509 0.0 2 0.0 0.0 0.0 0.10146917019433521 0.0 3 0.0 0.0 0.0 0.18779706109463823 0.0 4 0.0 0.0 0.0 0.26837635062118087 0.0 5 0.0 0.0 0.0 0.49793904872370454 0.0 6 0.0 0.0 0.0 0.8410754658591695 0.0 7 0.0 0.0 0.0 1.047050536703266 0.0 8 0.0 0.0 0.0 1.413195483661472 0.0 9 0.0 0.0 0.0 1.671359945355801 0.0 10 0.0 0.0 0.0 2.0046093331015062 0.0 11 0.0 0.0 0.0 2.277067614427888 0.0 12 0.0 0.0 0.0 2.4994551540589858 0.0 13 1.4124327699656906E-5 0.0 0.0 2.6073650176843644 0.0 14 1.4124327699656906E-5 0.0 0.0 2.665528999151552 0.0 15 1.4124327699656906E-5 0.0 0.0 2.718664719957661 0.0 16 1.4124327699656906E-5 0.0 0.0 2.805684702915247 0.0 17 1.4124327699656906E-5 0.0 0.0 2.9020973637931053 0.0 18 1.4124327699656906E-5 0.0 0.0 3.034710676565184 0.0 19 1.4124327699656906E-5 0.0 0.0 3.113580922440068 0.0 20 1.4124327699656906E-5 0.0 0.0 3.202747803208002 0.0 21 1.4124327699656906E-5 0.0 0.0 3.3076774336887533 0.0 22 1.4124327699656906E-5 0.0 0.0 3.424768110318909 0.0 23 1.4124327699656906E-5 0.0 0.0 3.5450932579922863 0.0 24 1.4124327699656906E-5 0.0 0.0 3.6448251358795636 0.0 25 1.4124327699656906E-5 0.0 0.0 3.730686923965778 0.0 26 1.4124327699656906E-5 0.0 0.0 3.8148114197449345 0.0 27 1.4124327699656906E-5 0.0 0.0 3.90143592152693 0.0 28 1.4124327699656906E-5 0.0 0.0 3.9970999930367066 0.0 29 1.4124327699656906E-5 1.4124327699656906E-5 0.0 4.099190633649827 0.0 30 1.4124327699656906E-5 1.4124327699656906E-5 0.0 4.231154227347721 0.0 31 1.4124327699656906E-5 1.4124327699656906E-5 0.0 4.338569739503612 0.0 32 1.4124327699656906E-5 1.4124327699656906E-5 0.0 4.452468318073645 0.0 33 1.4124327699656906E-5 1.4124327699656906E-5 0.0 4.56506745849531 0.0 34 1.4124327699656906E-5 1.4124327699656906E-5 0.0 4.67951688584563 0.0 35 2.824865539931381E-5 1.4124327699656906E-5 0.0 4.810181041395156 0.0 36 2.824865539931381E-5 1.4124327699656906E-5 0.0 4.935195465864819 0.0 37 2.824865539931381E-5 1.4124327699656906E-5 0.0 5.0540234348020325 0.0 38 2.824865539931381E-5 1.4124327699656906E-5 0.0 5.183656514429484 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 136280 0.0 43.247726 1 CGGTCTA 920 0.0 41.847828 31 CGTAACG 45 2.3539542E-8 39.11111 1 ACGGTCT 1015 0.0 38.364532 30 GTTTTTT 157460 0.0 38.249207 2 TCACGAC 1030 0.0 37.80583 25 CGACGGT 1045 0.0 37.68421 28 CACGACG 1035 0.0 37.623188 26 TAGGGAC 5625 0.0 36.764442 5 AGGGCGA 4795 0.0 36.750782 6 CGGGTAT 1145 0.0 36.50655 6 CATACGA 2395 0.0 36.19207 18 CTATACG 140 0.0 36.142857 1 TATACGG 755 0.0 36.132454 2 ATAGGGA 7390 0.0 35.664413 4 GGCGATT 2835 0.0 35.61905 8 GTAGGGC 3035 0.0 35.59143 4 GGGCGAT 8965 0.0 35.46012 7 GTACGGG 2035 0.0 35.45946 3 AACGGGA 2030 0.0 35.438423 4 >>END_MODULE