##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546165_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 572665 Sequences flagged as poor quality 0 Sequence length 50 %GC 37 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.95553945151179 33.0 31.0 34.0 30.0 34.0 2 32.329578374791545 33.0 31.0 34.0 31.0 34.0 3 32.29339840919211 34.0 31.0 34.0 30.0 34.0 4 36.00120663913457 37.0 35.0 37.0 35.0 37.0 5 35.962035395912096 37.0 35.0 37.0 35.0 37.0 6 36.01551517903137 37.0 35.0 37.0 35.0 37.0 7 36.18862860485624 37.0 35.0 37.0 35.0 37.0 8 36.0856242305711 37.0 35.0 37.0 35.0 37.0 9 37.74235373211214 39.0 38.0 39.0 35.0 39.0 10 37.57855989103577 39.0 37.0 39.0 35.0 39.0 11 37.477926885701066 39.0 37.0 39.0 35.0 39.0 12 37.1926309447932 39.0 37.0 39.0 34.0 39.0 13 37.063962351462024 39.0 37.0 39.0 33.0 39.0 14 38.35730488156252 40.0 37.0 41.0 33.0 41.0 15 38.4206158923629 40.0 37.0 41.0 34.0 41.0 16 38.456605519806516 40.0 37.0 41.0 34.0 41.0 17 38.38217631599626 40.0 37.0 41.0 34.0 41.0 18 38.23236272515345 40.0 37.0 41.0 34.0 41.0 19 38.08058463499603 40.0 36.0 41.0 34.0 41.0 20 37.83570673954232 40.0 35.0 41.0 34.0 41.0 21 37.7886093964185 40.0 35.0 41.0 34.0 41.0 22 37.73478211519824 40.0 35.0 41.0 33.0 41.0 23 37.6845206185117 40.0 35.0 41.0 33.0 41.0 24 37.60220023923236 39.0 35.0 41.0 33.0 41.0 25 37.5996367859045 40.0 35.0 41.0 33.0 41.0 26 37.565960902098084 40.0 35.0 41.0 33.0 41.0 27 37.51839557158199 40.0 35.0 41.0 33.0 41.0 28 37.443522827482035 40.0 35.0 41.0 33.0 41.0 29 37.39120602795701 40.0 35.0 41.0 33.0 41.0 30 37.25011306784944 40.0 35.0 41.0 33.0 41.0 31 37.05838841207338 40.0 35.0 41.0 32.0 41.0 32 36.773256615997134 40.0 35.0 41.0 31.0 41.0 33 36.46023940698314 40.0 35.0 41.0 30.0 41.0 34 36.06705490993862 40.0 35.0 41.0 29.0 41.0 35 35.87306191228729 40.0 35.0 41.0 26.0 41.0 36 35.670491474072975 39.0 35.0 41.0 25.0 41.0 37 35.63747915447949 39.0 35.0 41.0 24.0 41.0 38 35.607424934298415 39.0 35.0 41.0 24.0 41.0 39 35.53339910768076 39.0 35.0 41.0 24.0 41.0 40 35.384254319715716 39.0 35.0 41.0 23.0 41.0 41 35.29547641291156 39.0 35.0 41.0 23.0 41.0 42 35.25514917098129 39.0 35.0 41.0 23.0 41.0 43 35.16703308216846 39.0 35.0 41.0 23.0 41.0 44 35.0592929548689 39.0 35.0 41.0 22.0 41.0 45 34.99164083713864 39.0 35.0 41.0 22.0 41.0 46 34.9563881152157 39.0 35.0 41.0 22.0 41.0 47 34.92543284468232 39.0 35.0 41.0 22.0 41.0 48 34.840466939659315 38.0 35.0 40.0 22.0 41.0 49 34.70283848323191 38.0 34.0 40.0 21.0 41.0 50 34.625989016266054 38.0 34.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 3.0 13 1.0 14 5.0 15 11.0 16 22.0 17 62.0 18 138.0 19 271.0 20 509.0 21 889.0 22 1503.0 23 2360.0 24 3765.0 25 6152.0 26 10434.0 27 13054.0 28 12696.0 29 10986.0 30 10538.0 31 11507.0 32 13814.0 33 17907.0 34 30444.0 35 56753.0 36 32626.0 37 42598.0 38 76315.0 39 217300.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.875747601128058 26.220914496258718 28.961609317838526 17.941728584774694 2 32.15789335824609 28.788209511669127 28.525752403237497 10.528144726847284 3 28.147346179703664 25.088315158076714 36.45621785860843 10.308120803611185 4 27.31142989356779 25.5294107375167 35.3845616547196 11.774597714195908 5 22.365257174788052 32.72139907275633 33.751844446578716 11.161499305876909 6 18.28259104362935 41.37200632132224 31.798346328132503 8.547056306915911 7 78.3807286982791 6.041053670121275 13.812787580871888 1.7654300507277378 8 79.35546960264728 5.830983210079191 12.879432128731457 1.9341150585420797 9 69.52913134205862 12.120174971405621 15.216575135550453 3.134118550985306 10 31.71679777880611 39.19516645857526 20.971248461142203 8.11678730147643 11 32.7475923969511 22.26607178717051 33.2562667528136 11.730069063064793 12 31.680825613578616 23.057634044336567 32.88187683898964 12.379663503095179 13 17.698829158408493 36.48503051522269 31.331581290981635 14.484559035387182 14 13.251202710135942 37.66425397047139 33.504230221857455 15.580313097535209 15 16.558546445129352 27.421092610863244 42.55978626247457 13.460574681532833 16 16.15499463036854 27.059275492652773 38.65104380396916 18.134686073009526 17 13.598002322474745 30.53530423546052 33.833043751582515 22.033649690482218 18 15.282407690359983 32.48705613229375 37.02635921524801 15.20417696209826 19 23.253036242829577 28.093911798346326 31.819824853972218 16.83322710485188 20 21.676896614949403 29.458933233216626 34.997424323120846 13.866745828713123 21 16.938873512437464 33.04252922738425 34.21459317401971 15.804004086158574 22 18.531078379157098 29.994848646241696 31.227681105009037 20.24639186959217 23 18.74586363755424 29.3232518138877 32.98455466983315 18.94632987872491 24 14.201147267599731 30.161263565959157 41.825150829891825 13.81243833654929 25 12.671631756786253 36.67449556023155 36.36052491421686 14.293347768765333 26 15.101848375577346 35.05731972444623 33.01057337186663 16.830258528109802 27 17.890738913675534 33.23967764749025 31.595784621026258 17.273798817807968 28 13.060689932159288 33.73385836396497 37.51215806798041 15.69329363589533 29 13.416569896885614 31.623374922511417 34.55999580906813 20.400059371534844 30 13.684614914478797 37.61396278801743 33.290841940750695 15.410580356753076 31 22.11589672845381 33.499515423502395 30.41778352090664 13.966804327137158 32 19.78381776431247 32.294273266220216 30.87022954083103 17.051679428636287 33 18.042136327521327 36.24789362017934 29.096243004199664 16.613727048099676 34 15.012616451153814 33.46895654527516 33.393170527271614 18.125256476299406 35 22.804431910453758 29.211493630656665 32.26231741070259 15.721757048186985 36 20.80064260955358 35.79492373377105 29.213239852269652 14.191193804405716 37 15.764714099866413 37.0270577038932 32.55411104223237 14.654117154008015 38 15.303187727554505 35.383863166074406 33.64165786279937 15.671291243571723 39 19.854888983960954 32.79718509075987 31.691826809740427 15.656099115538751 40 17.451564178009832 34.408947639544934 30.921044589768886 17.218443592676348 41 14.795910348982389 34.578680380327064 31.11539905529411 19.510010215396438 42 15.427693328560327 34.6556887534597 29.115451441942497 20.801166476037476 43 20.573109933381645 30.607772432399393 30.10328900840806 18.7158286258109 44 16.532178498773277 34.90836702085861 29.48076100337894 19.078693476989166 45 14.805165323531208 40.81059607274759 27.337972462085165 17.046266141636035 46 17.019025084473473 38.257794696724964 29.857071760977185 14.866108457824382 47 20.367579649533322 31.151895087005492 32.620642085687095 15.859883177774092 48 17.439515248880237 31.458007735761743 33.68915509067256 17.413321924685462 49 16.494634734094106 34.80167288030524 32.33862729519003 16.365065090410624 50 15.777286895479905 35.71285131796076 31.5440964612819 16.96576532527743 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1143.0 1 1932.5 2 2722.0 3 7838.5 4 12955.0 5 9459.5 6 5964.0 7 5979.0 8 5994.0 9 6142.0 10 6290.0 11 6256.5 12 6223.0 13 6211.5 14 6200.0 15 5676.5 16 5153.0 17 5401.0 18 5649.0 19 5238.5 20 4828.0 21 4819.0 22 4810.0 23 5390.0 24 5970.0 25 8834.5 26 11699.0 27 16635.5 28 21572.0 29 27408.0 30 33244.0 31 36439.0 32 39634.0 33 39719.0 34 39804.0 35 42378.5 36 44953.0 37 41091.5 38 37230.0 39 39639.0 40 42048.0 41 40879.5 42 39711.0 43 37805.0 44 35899.0 45 32774.5 46 29650.0 47 28060.0 48 26470.0 49 24697.5 50 22925.0 51 21300.0 52 19675.0 53 16402.0 54 13129.0 55 11297.5 56 9466.0 57 8674.0 58 7882.0 59 7147.5 60 6413.0 61 5915.5 62 5418.0 63 4760.0 64 4102.0 65 3374.5 66 2647.0 67 2194.0 68 1741.0 69 1496.5 70 1252.0 71 1062.0 72 872.0 73 743.5 74 615.0 75 469.5 76 324.0 77 270.0 78 216.0 79 144.0 80 72.0 81 71.0 82 70.0 83 44.0 84 18.0 85 12.0 86 6.0 87 5.5 88 5.0 89 2.5 90 0.0 91 1.0 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 572665.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.316327491639157 #Duplication Level Percentage of deduplicated Percentage of total 1 76.95350053571156 19.481800211901028 2 7.524017484714494 3.8096098139170254 3 3.123078721348994 2.3719465107552242 4 1.8446639244363479 1.8680046409217155 5 1.2518032309552791 1.5845530274977926 6 1.003733633547941 1.5246509628763558 7 0.8846287688853063 1.5676886135138186 8 0.676144224430606 1.3693990893812469 9 0.6060032487640444 1.3807599036037037 >10 5.018960012715793 24.417000205598075 >50 0.5809690012169194 10.283855683384921 >100 0.5138009522085271 23.53034814036146 >500 0.01384908226977162 2.2542335071961324 >1k 0.003462270567442905 2.326809342951572 >5k 0.001384908226977162 2.2293403461399186 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7401 1.2923786157701274 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 5316 0.928291409462775 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 4929 0.8607126330402592 No Hit AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 4190 0.7316668558406747 No Hit GAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA 1642 0.2867295888521212 No Hit GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA 1295 0.22613569888154506 No Hit AAGGAAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 1217 0.2125151703002628 No Hit GAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 904 0.1578584338138353 No Hit GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 819 0.14301555010346362 No Hit TAAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA 806 0.14074546200658325 No Hit TAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 799 0.13952310687749384 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCC 750 0.1309666209738678 No Hit GGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA 724 0.12642644478010706 No Hit AGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 672 0.11734609239258553 No Hit AGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCAAGGAAG 659 0.11507600429570518 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 655 0.11437751565051121 No Hit ATTGCTGGGAATATTTTTTAAAATAAATACTATAAGTATCAAATTATTAC 601 0.10494791894039274 No Hit GGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA 584 0.10197934219831838 No Hit GAATCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTCTT 574 0.10023312058533349 No Hit ATGAGCGGGGTAGACAGTAATTTGTACACTGTATAGTTTTGTTAAGAATT 574 0.10023312058533349 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04871958300227882 0.0 2 0.0 0.0 0.0 0.2050064173644277 0.0 3 0.0 0.0 0.0 0.29528607475574725 0.0 4 0.0 0.0 0.0 0.4582085512472388 0.0 5 0.0 0.0 0.0 0.8745077837828399 0.0 6 0.0 0.0 0.0 1.182541276313377 0.0 7 0.0 0.0 0.0 1.3779434748063877 0.0 8 0.0 0.0 0.0 1.798259017051854 0.0 9 0.0 0.0 0.0 1.9643246924467184 0.0 10 0.0 0.0 0.0 2.3835925017243937 0.0 11 0.0 0.0 0.0 2.7665389014519834 0.0 12 0.0 0.0 0.0 3.1789964464390175 0.0 13 1.746221612984904E-4 0.0 0.0 3.3050736468965276 0.0 14 1.746221612984904E-4 0.0 0.0 3.357460295286075 0.0 15 1.746221612984904E-4 0.0 0.0 3.451581640225961 0.0 16 1.746221612984904E-4 0.0 0.0 3.6393004636218382 0.0 17 1.746221612984904E-4 0.0 0.0 3.8668331397937714 0.0 18 1.746221612984904E-4 0.0 0.0 4.146403220032655 0.0 19 1.746221612984904E-4 0.0 0.0 4.313167384072712 0.0 20 1.746221612984904E-4 0.0 0.0 4.472073550854339 0.0 21 1.746221612984904E-4 0.0 0.0 4.6720159255411104 0.0 22 1.746221612984904E-4 0.0 0.0 4.893436826067596 0.0 23 1.746221612984904E-4 0.0 0.0 5.133716920014319 0.0 24 1.746221612984904E-4 0.0 0.0 5.320562632603703 0.0 25 1.746221612984904E-4 0.0 0.0 5.479992665869226 0.0 26 1.746221612984904E-4 0.0 0.0 5.635755633747479 0.0 27 1.746221612984904E-4 0.0 0.0 5.8065361074974025 0.0 28 1.746221612984904E-4 0.0 0.0 5.966140762924223 0.0 29 1.746221612984904E-4 0.0 0.0 6.150017898771533 0.0 30 1.746221612984904E-4 0.0 0.0 6.39326656946033 0.0 31 1.746221612984904E-4 0.0 0.0 6.622021600761353 0.0 32 1.746221612984904E-4 0.0 0.0 6.813058245221901 0.0 33 1.746221612984904E-4 0.0 0.0 7.009682798844001 0.0 34 1.746221612984904E-4 0.0 0.0 7.214165349724533 0.0 35 1.746221612984904E-4 0.0 0.0 7.493910052124715 0.0 36 1.746221612984904E-4 0.0 0.0 7.719172640199767 0.0 37 1.746221612984904E-4 0.0 0.0 7.946006827726507 0.0 38 1.746221612984904E-4 0.0 0.0 8.158696620188069 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCTTCGT 20 7.8531675E-4 44.000004 40 ATGGGCG 80 0.0 44.000004 5 TAATACG 20 7.8531675E-4 44.000004 1 TCGCATC 20 7.8531675E-4 44.000004 35 GATCGTC 20 7.8531675E-4 44.000004 9 CTCGTAG 20 7.8531675E-4 44.000004 1 CGTATAA 20 7.8531675E-4 44.000004 26 TTTACGA 20 7.8531675E-4 44.000004 19 ACCATTG 20 7.8531675E-4 44.000004 44 CATGCGG 30 2.525483E-6 44.000004 2 ACGTTCA 20 7.8531675E-4 44.000004 25 AACCCGT 20 7.8531675E-4 44.000004 41 GCGCGAC 20 7.8531675E-4 44.000004 9 GACGTGA 40 8.300049E-9 44.000004 8 GGCGTAC 20 7.8531675E-4 44.000004 8 TTCACGG 20 7.8531675E-4 44.000004 2 GTTAGCA 20 7.8531675E-4 44.000004 21 CACGAGG 80 0.0 44.000004 2 CGACAGG 30 2.525483E-6 44.000004 2 CGCGACC 20 7.8531675E-4 44.000004 10 >>END_MODULE