##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1546162_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1383764 Sequences flagged as poor quality 0 Sequence length 50 %GC 37 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.827459740244723 31.0 31.0 34.0 30.0 34.0 2 32.235750460338615 33.0 31.0 34.0 30.0 34.0 3 32.283486924070864 34.0 31.0 34.0 30.0 34.0 4 35.958909178154656 37.0 35.0 37.0 35.0 37.0 5 35.850523644205225 37.0 35.0 37.0 35.0 37.0 6 35.94507878511076 37.0 35.0 37.0 35.0 37.0 7 36.13228700847832 37.0 35.0 37.0 35.0 37.0 8 36.01267268117974 37.0 35.0 37.0 35.0 37.0 9 37.672856065051555 39.0 38.0 39.0 35.0 39.0 10 37.52327853593532 39.0 37.0 39.0 35.0 39.0 11 37.37981476610173 39.0 37.0 39.0 34.0 39.0 12 36.98052124495217 39.0 35.0 39.0 33.0 39.0 13 36.810649070217174 39.0 35.0 39.0 33.0 39.0 14 38.06716101878644 40.0 36.0 41.0 33.0 41.0 15 38.20413596538138 40.0 36.0 41.0 33.0 41.0 16 38.22049280079551 40.0 36.0 41.0 34.0 41.0 17 38.13911982100994 40.0 36.0 41.0 34.0 41.0 18 37.999561341384805 39.0 36.0 41.0 34.0 41.0 19 37.8413508372815 39.0 36.0 41.0 34.0 41.0 20 37.57477720189281 39.0 35.0 41.0 34.0 41.0 21 37.51551998751232 39.0 35.0 41.0 33.0 41.0 22 37.43760713532076 39.0 35.0 41.0 33.0 41.0 23 37.38004891007426 39.0 35.0 41.0 33.0 41.0 24 37.305652553470104 39.0 35.0 41.0 33.0 41.0 25 37.28692103566793 39.0 35.0 41.0 33.0 41.0 26 37.256902188523476 39.0 35.0 41.0 33.0 41.0 27 37.18175859467366 39.0 35.0 41.0 33.0 41.0 28 37.10229200933107 39.0 35.0 41.0 33.0 41.0 29 37.03512665454514 39.0 35.0 41.0 33.0 41.0 30 36.87736853972209 39.0 35.0 41.0 32.0 41.0 31 36.649116467837004 39.0 35.0 41.0 31.0 41.0 32 36.3928531165719 39.0 35.0 41.0 31.0 41.0 33 36.03780124356465 39.0 35.0 41.0 30.0 41.0 34 35.721222694043206 39.0 35.0 41.0 27.0 41.0 35 35.48310116464946 39.0 35.0 41.0 25.0 41.0 36 35.30332628974305 39.0 35.0 41.0 24.0 41.0 37 35.21013482067752 39.0 35.0 41.0 23.0 41.0 38 35.18721328203364 39.0 35.0 41.0 23.0 41.0 39 35.11347888801848 39.0 35.0 41.0 23.0 41.0 40 35.00976972952035 38.0 35.0 41.0 23.0 41.0 41 34.94280744404393 38.0 35.0 41.0 22.0 41.0 42 34.86259217612252 38.0 35.0 41.0 22.0 41.0 43 34.763947465030164 38.0 35.0 41.0 21.0 41.0 44 34.60749593138714 38.0 34.0 41.0 20.0 41.0 45 34.53852246481336 38.0 34.0 40.0 20.0 41.0 46 34.48623536961505 38.0 34.0 40.0 20.0 41.0 47 34.439238916462635 38.0 34.0 40.0 20.0 41.0 48 34.387285693225145 38.0 34.0 40.0 20.0 41.0 49 34.25387638354517 38.0 34.0 40.0 20.0 41.0 50 34.11439306124455 38.0 34.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 4.0 10 5.0 11 5.0 12 6.0 13 8.0 14 16.0 15 27.0 16 62.0 17 186.0 18 402.0 19 864.0 20 1578.0 21 2582.0 22 4248.0 23 6647.0 24 10190.0 25 16575.0 26 26133.0 27 32930.0 28 32345.0 29 29442.0 30 29139.0 31 32087.0 32 37797.0 33 48022.0 34 82660.0 35 153371.0 36 81577.0 37 102344.0 38 175866.0 39 476645.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.613497677349606 26.60757181137824 28.142949231227288 18.635981280044863 2 33.323745956680476 27.196400542289002 28.17575829404436 11.304095206986164 3 27.707759415622895 24.74778936292605 36.97913806111447 10.56531316033659 4 26.954813103968593 26.130611867341543 36.04581417062447 10.868760858065393 5 21.171601515865422 32.968410798373135 34.42429489421607 11.43569279154538 6 19.61396596529466 41.19040530032578 30.89363504181349 8.301993692566073 7 76.67181687050683 6.820310399750247 14.519961496324518 1.9879112334184152 8 77.55621623340396 6.29529312801894 13.813988512492015 2.334502126085084 9 69.1762468166537 11.090041365435146 15.99188879028505 3.7418230276260984 10 34.261478113319896 35.974486978993525 20.9982338028739 8.76580110481267 11 32.948392934055235 22.936281042143026 32.38377353363724 11.731552490164509 12 32.601512974755806 23.082042891706966 32.309917008969734 12.006527124567484 13 18.020702952237517 36.35179120138983 30.957663300967507 14.66984254540514 14 12.590947589328817 38.277697642083474 32.923244137006016 16.208110631581686 15 15.021997970752238 28.06815324000335 43.60136555077311 13.3084832384713 16 15.079883563960328 26.32500917786559 40.71604695598383 17.879060302190258 17 13.777060250158263 28.96621100129791 33.14409104442665 24.112637704117176 18 15.57144137295088 32.143197828531456 37.003491924923615 15.281868873594052 19 22.470594696783554 28.68935743378206 31.714078412214803 17.125969457219583 20 22.010400617446326 27.242940270161675 35.630136352730666 15.11652275966133 21 16.58620978721805 32.85083294550227 33.84529442881879 16.717662838460896 22 19.03062950040614 30.101303401447066 30.853816113152245 20.01425098499455 23 18.51862022714856 30.35517617165933 31.77911840458344 19.34708519660867 24 14.963534244278648 28.36885480472104 42.793062978947276 13.874547972053039 25 13.622915468244583 35.123836145469895 36.09676216464657 15.156486221638952 26 14.201410067034553 34.84987324428154 33.21180490314822 17.736911785535682 27 17.32152303427463 34.08160640109151 31.794366669460977 16.802503895172876 28 13.481561884830073 33.1432238445284 37.441427873539126 15.933786397102395 29 13.390794962146725 29.73512824441162 36.32808773750437 20.545989055937284 30 14.30981005431562 35.499550501386075 33.93215895196002 16.25848049233829 31 21.40263802209047 34.33945383750408 29.518545069824043 14.7393630705814 32 19.91177686368485 32.12093969780974 30.101881534712565 17.865401903792844 33 18.198623464694847 35.61228648815838 29.279559231198384 16.909530815948383 34 15.322844068786296 31.815107200360753 32.24155275032447 20.62049598052847 35 20.21175576182066 29.07641765503366 32.46709699052729 18.244729592618395 36 21.139948719579348 33.87391202546099 29.160102445214648 15.826036809745014 37 15.37509286265577 36.27424907715478 33.05397452166699 15.296683538522466 38 14.922342249111843 34.46368022292819 32.8952769402875 17.718700587672465 39 18.16552533524503 33.091914517215365 31.91519652195027 16.827363625589335 40 18.045129082704854 33.23926623325943 30.87954304346695 17.83606164056877 41 14.105945811569025 32.63316577104188 31.711404545861864 21.549483871527226 42 15.821122676988272 32.27985407916379 29.161186445087456 22.737836798760483 43 19.05454976426616 30.396295900167946 30.11423913326261 20.434915202303284 44 16.358569813927808 33.70408537872065 29.008559262995714 20.92878554435583 45 14.700122275185654 39.74377133673083 27.180212810855032 18.375893577228485 46 16.960912409919608 38.20550325055429 29.16819631093163 15.66538802859447 47 18.741707400973 30.882505976452634 32.503808452886474 17.871978169687893 48 17.45861288485609 29.396342150829184 34.076475468360215 19.068569495954513 49 16.137289306558056 33.06416412047141 32.20737062100184 18.59117595196869 50 15.420404057339256 35.015147091556074 31.887590658522697 17.676858192581975 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3255.0 1 5212.5 2 7170.0 3 20058.0 4 32946.0 5 23718.5 6 14491.0 7 14861.5 8 15232.0 9 15524.0 10 15816.0 11 15796.0 12 15776.0 13 14806.0 14 13836.0 15 13042.0 16 12248.0 17 11209.5 18 10171.0 19 9815.5 20 9460.0 21 9799.0 22 10138.0 23 12178.0 24 14218.0 25 21255.5 26 28293.0 27 38117.0 28 47941.0 29 57498.5 30 67056.0 31 74347.0 32 81638.0 33 85076.5 34 88515.0 35 91290.5 36 94066.0 37 89685.0 38 85304.0 39 90249.5 40 95195.0 41 100690.5 42 106186.0 43 103102.0 44 100018.0 45 96412.0 46 92806.0 47 87636.5 48 82467.0 49 74646.5 50 66826.0 51 55453.0 52 44080.0 53 37228.0 54 30376.0 55 25746.0 56 21116.0 57 19377.5 58 17639.0 59 17396.0 60 17153.0 61 15773.5 62 14394.0 63 12422.5 64 10451.0 65 8291.5 66 6132.0 67 5243.5 68 4355.0 69 3531.0 70 2707.0 71 2272.5 72 1838.0 73 1477.0 74 1116.0 75 861.0 76 606.0 77 505.0 78 404.0 79 259.5 80 115.0 81 105.0 82 95.0 83 82.5 84 70.0 85 53.5 86 37.0 87 21.0 88 5.0 89 4.0 90 3.0 91 2.5 92 2.0 93 1.5 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1383764.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.455830120830463 #Duplication Level Percentage of deduplicated Percentage of total 1 77.55051508351998 17.41461192498425 2 8.963575690296265 4.025690659529971 3 3.242994508606224 2.184724013041423 4 1.6944105757256314 1.5219758417373326 5 1.1213159605653642 1.2590040361115824 6 0.7951829846532434 1.07138964110089 7 0.5776629809059125 0.9080331236420989 8 0.460801514565135 0.8278144424396845 9 0.4012087545792765 0.8108528072239973 >10 3.983626480757755 20.098169924888424 >50 0.6208881985003931 9.674315943618335 >100 0.5135700780157791 24.76744171840906 >500 0.06387203621786508 9.151777906814202 >1k 0.008754035420722625 2.713374482145058 >5k 0.001296894136403352 2.165646773945604 >10k+ 3.24223534100838E-4 1.405176760368134 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 19300 1.3947465030164103 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 9375 0.677499920506676 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 8261 0.5969948632859361 No Hit GAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA 6245 0.4513052803801805 No Hit AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 5864 0.4237716836107891 No Hit GAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA 2234 0.16144371439060418 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2125 0.15356664864817987 No Hit AGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 1908 0.1378847838215187 No Hit GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA 1874 0.13542771744314783 No Hit GGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA 1822 0.13166985121740413 No Hit AAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA 1602 0.1157711864161808 No Hit TAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 1599 0.11555438644161867 No Hit GAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 1584 0.11447038656880798 No Hit CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1530 0.11056798702668953 No Hit AAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 1440 0.10406398778982544 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.09344078903628075 0.0 2 0.0 0.0 0.0 0.35179409205615986 0.0 3 0.0 0.0 0.0 0.5425058030126525 0.0 4 0.0 0.0 0.0 0.7775169754380082 0.0 5 0.0 0.0 0.0 1.3420641091978112 0.0 6 0.0 0.0 0.0 1.7857091238101295 0.0 7 0.0 0.0 0.0 2.0877837550333727 0.0 8 0.0 0.0 0.0 2.7973700717752448 0.0 9 0.0 0.0 0.0 3.057819107882558 0.0 10 0.0 0.0 0.0 3.5646974484088325 0.0 11 0.0 0.0 0.0 4.139361914314868 0.0 12 0.0 0.0 0.0 4.661994386325992 0.0 13 0.0 0.0 0.0 4.918107422942063 0.0 14 0.0 0.0 0.0 4.990229547813066 0.0 15 0.0 0.0 0.0 5.127174865078149 0.0 16 0.0 0.0 0.0 5.4012100329246895 0.0 17 0.0 0.0 0.0 5.736527326914127 0.0 18 0.0 0.0 0.0 6.18472514099225 0.0 19 0.0 0.0 0.0 6.406294714994753 0.0 20 0.0 0.0 0.0 6.639571487623612 0.0 21 0.0 0.0 0.0 6.96137491653201 0.0 22 0.0 0.0 0.0 7.307315409274992 0.0 23 0.0 0.0 0.0 7.689389231111663 0.0 24 0.0 0.0 0.0 7.970651064776941 0.0 25 0.0 0.0 0.0 8.203205170823926 0.0 26 0.0 0.0 0.0 8.445587542384395 0.0 27 0.0 0.0 0.0 8.67149311587814 0.0 28 0.0 0.0 0.0 8.909611754605555 0.0 29 0.0 0.0 0.0 9.162689591577754 0.0 30 0.0 0.0 0.0 9.490852486406641 0.0 31 0.0 0.0 0.0 9.82862684677445 0.0 32 0.0 0.0 0.0 10.111406280261663 0.0 33 0.0 0.0 0.0 10.375685449252908 0.0 34 0.0 0.0 0.0 10.663668082129611 0.0 35 0.0 0.0 0.0 11.060845635527446 0.0 36 0.0 0.0 0.0 11.357428000728447 0.0 37 0.0 0.0 0.0 11.654516232536762 0.0 38 0.0 0.0 0.0 11.930863933445298 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACCGTTG 65 0.0 44.000004 1 TCACGAG 20 7.8570395E-4 44.0 1 CGAACTA 25 4.4433124E-5 44.0 27 AGATCGC 20 7.8570395E-4 44.0 19 ACGTTAG 20 7.8570395E-4 44.0 1 TAGGTCG 20 7.8570395E-4 44.0 3 GACCGTA 25 4.4433124E-5 44.0 24 AAGACCG 25 4.4433124E-5 44.0 22 CCTACGG 25 4.4433124E-5 44.0 1 ATAGACG 50 2.7284841E-11 44.0 1 TAACGTT 20 7.8570395E-4 44.0 20 TCGATAG 20 7.8570395E-4 44.0 1 CGTTAAT 20 7.8570395E-4 44.0 18 TAGCACG 25 4.4433124E-5 44.0 1 TACGCGG 20 7.8570395E-4 44.0 2 TACGCCA 25 4.4433124E-5 44.0 24 TGACATA 20 7.8570395E-4 44.0 43 TGATTCG 50 2.7284841E-11 44.0 15 ACGGATG 20 7.8570395E-4 44.0 5 AGACCAC 50 2.7284841E-11 44.0 40 >>END_MODULE